Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35673 * 117.00002 * 2 1 4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11091 * 180.27946 * 4 3 2 6 6 C 1.50709 * 120.75396 * 179.71972 * 5 4 3 7 7 O 1.45201 * 109.46802 * 89.99713 * 6 5 4 8 8 C 1.34229 * 116.99536 * 179.97438 * 7 6 5 9 9 O 1.20826 * 120.00221 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99990 * 179.97438 * 8 7 6 11 11 S 1.81000 * 109.47342 * 180.02562 * 10 8 7 12 12 C 1.76199 * 100.00303 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.38801 * 120.00366 * 179.97438 * 12 11 10 15 15 N 1.31634 * 119.99503 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99896 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47186 * 90.00316 * 16 14 12 18 18 H 1.48507 * 109.46860 * 209.99792 * 16 14 12 19 19 H 1.48496 * 109.47600 * 329.99963 * 16 14 12 20 20 C 1.38826 * 118.48994 * 359.43073 * 5 4 3 21 21 C 1.38050 * 119.28783 * 0.57157 * 20 5 4 22 22 N 1.31966 * 120.82936 * 359.69555 * 21 20 5 23 23 H 1.08992 * 109.47422 * 300.00227 * 1 2 3 24 24 H 1.09000 * 109.47227 * 60.00541 * 1 2 3 25 25 H 1.09003 * 109.46979 * 179.97438 * 1 2 3 26 26 H 1.08002 * 120.43904 * 359.97438 * 4 3 2 27 27 H 1.08996 * 109.46883 * 209.99571 * 6 5 4 28 28 H 1.08998 * 109.47154 * 329.99880 * 6 5 4 29 29 H 1.09000 * 109.47200 * 300.00097 * 10 8 7 30 30 H 1.09002 * 109.47012 * 59.99812 * 10 8 7 31 31 H 0.96999 * 119.99171 * 180.02562 * 15 14 12 32 32 H 1.08000 * 120.36289 * 180.30624 * 20 5 4 33 33 H 1.07997 * 119.58512 * 179.71868 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0483 2.5132 0.0064 6 6 5.5511 2.6270 0.0136 7 8 6.0399 2.6669 -1.3531 8 6 7.3676 2.7683 -1.5227 9 8 8.0970 2.8225 -0.5610 10 6 7.9483 2.8147 -2.9125 11 16 9.7502 2.9511 -2.8093 12 6 10.1533 2.9853 -4.5242 13 1 9.3691 2.9270 -5.2645 14 6 11.4787 3.0872 -4.9238 15 7 12.4344 3.1588 -4.0214 16 14 11.9059 3.1227 -6.7418 17 1 11.9126 4.5282 -7.2214 18 1 13.2493 2.5236 -6.9464 19 1 10.8958 2.3447 -7.5031 20 6 3.2504 3.6492 -0.0005 21 6 1.8769 3.5097 -0.0010 22 7 1.3186 2.3140 -0.0010 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 4.0228 0.3695 0.0014 27 1 5.8438 3.5406 0.5309 28 1 5.9783 1.7657 0.5272 29 1 7.6834 1.9027 -3.4476 30 1 7.5481 3.6775 -3.4449 31 1 13.3605 3.2303 -4.3007 32 1 3.6991 4.6315 -0.0012 33 1 1.2516 4.3902 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762789620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = -86.484565 kcal Electronic energy + Delta-G solvation = -18454.966814 eV Core-core repulsion = 15186.917372 eV Total energy + Delta-G solvation = -3268.049442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.98001 -40.04596 -38.24731 -36.30774 -33.52040 -32.50372 -31.05577 -29.92216 -27.89811 -26.80494 -25.55429 -23.75196 -22.17694 -21.05539 -18.36733 -17.94146 -17.50727 -17.19433 -16.37272 -16.27652 -16.09895 -15.66940 -14.86244 -14.74286 -14.48877 -14.18688 -13.69907 -13.48293 -13.29878 -12.70843 -12.56229 -12.26603 -12.12684 -11.91480 -11.50885 -11.12000 -11.08411 -10.84371 -10.61308 -10.34188 -9.99101 -9.95952 -9.87142 -9.13276 -8.81095 -8.39044 -6.62943 -6.29288 -4.02211 0.73335 0.89744 2.58486 2.59852 2.80329 3.19521 3.21988 3.27216 3.40416 3.63434 3.99086 4.12972 4.31081 4.61169 4.79471 4.79815 4.96368 5.00895 5.06709 5.08242 5.13709 5.26550 5.32515 5.43202 5.53040 5.57239 5.74315 5.98024 6.05069 6.07686 6.56677 6.92107 7.51746 7.53716 8.08066 8.28548 9.16344 10.78219 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034345 B = 0.002739 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.068661 B =10220.121378 C =10507.228917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.318 3.682 4 C -0.166 4.166 5 C -0.012 4.012 6 C 0.105 3.895 7 O -0.354 6.354 8 C 0.480 3.520 9 O -0.486 6.486 10 C -0.128 4.128 11 S -0.058 6.058 12 C -0.536 4.536 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.922 3.078 17 H -0.276 1.276 18 H -0.281 1.281 19 H -0.271 1.271 20 C -0.186 4.186 21 C 0.137 3.863 22 N -0.537 5.537 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.145 0.855 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.270 0.730 32 H 0.142 0.858 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.182 -1.798 8.053 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.139 3.861 4 C -0.186 4.186 5 C -0.020 4.020 6 C 0.031 3.969 7 O -0.273 6.273 8 C 0.322 3.678 9 O -0.371 6.371 10 C -0.276 4.276 11 S 0.168 5.832 12 C -0.684 4.684 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.748 3.252 17 H -0.202 1.202 18 H -0.207 1.207 19 H -0.196 1.196 20 C -0.207 4.207 21 C -0.018 4.018 22 N -0.261 5.261 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.163 0.837 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.080 0.920 32 H 0.160 0.840 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.904 -2.084 9.323 23.897 hybrid contribution 0.108 0.170 -2.091 2.100 sum -21.797 -1.914 7.233 23.045 Atomic orbital electron populations 1.22862 0.77137 1.02998 1.02448 1.86250 1.22977 1.24397 1.87811 1.19757 0.89163 0.84776 0.92433 1.21005 0.92128 0.99194 1.06303 1.19752 0.94617 0.92528 0.95070 1.21711 0.88586 1.04206 0.82422 1.86584 1.25821 1.84645 1.30217 1.23366 0.79519 0.72364 0.92584 1.90679 1.60024 1.44152 1.42224 1.23314 1.05516 1.06586 0.92197 1.85415 0.90189 1.96280 1.11269 1.22840 0.95389 1.59064 0.91133 0.90560 1.25010 0.95137 0.94319 0.99069 1.70013 1.00423 1.46287 1.33499 0.86112 0.77950 0.78507 0.82622 1.20181 1.20698 1.19572 1.21978 0.94733 0.99595 1.04363 1.22399 0.92621 0.93660 0.93136 1.67306 1.41070 0.98905 1.18829 0.92312 0.92248 0.88580 0.83684 0.89460 0.89613 0.87815 0.87819 0.92049 0.84004 0.81962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.34 10.48 -18.72 -0.20 -3.54 16 3 C 0.32 3.67 7.49 -17.12 -0.13 3.54 16 4 C -0.17 -1.86 9.75 -39.28 -0.38 -2.25 16 5 C -0.01 -0.13 5.55 -104.35 -0.58 -0.71 16 6 C 0.10 1.29 5.63 36.01 0.20 1.49 16 7 O -0.35 -5.48 10.20 -39.25 -0.40 -5.88 16 8 C 0.48 8.94 7.98 36.01 0.29 9.23 16 9 O -0.49 -10.28 15.61 -18.75 -0.29 -10.58 16 10 C -0.13 -2.57 6.27 36.01 0.23 -2.34 16 11 S -0.06 -1.52 20.58 -107.50 -2.21 -3.74 16 12 C -0.54 -14.92 9.50 30.94 0.29 -14.62 16 13 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -25.58 13.22 55.49 0.73 -24.85 16 16 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 C -0.19 -1.76 9.81 -39.43 -0.39 -2.15 16 21 C 0.14 1.24 11.18 -17.56 -0.20 1.05 16 22 N -0.54 -5.89 9.22 -13.33 -0.12 -6.01 16 23 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 24 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 25 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 27 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 28 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 29 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 30 H 0.10 1.92 8.14 -51.92 -0.42 1.49 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 316.32 15.07 4.77 4.77 Total: -1.00 -33.20 316.32 -6.22 -39.43 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.76 Total: -2.18 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 0.29 Total: -3.43 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.61 Total: -30.86 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.89 Total: -19.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.20 -6.22 -39.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762789620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.058 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds