Wall clock time and date at job start Tue Mar 31 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00242 * 2 1 4 4 H 1.48498 * 109.47044 * 240.00247 * 3 2 1 5 5 H 1.48501 * 109.46805 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47124 * 120.00096 * 3 2 1 7 7 C 1.38699 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00209 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99753 * 0.26784 * 7 2 1 10 10 C 1.35518 * 116.99910 * 174.66739 * 9 7 2 11 11 C 1.38839 * 120.16273 * 5.56144 * 10 9 7 12 12 C 1.38018 * 120.07415 * 179.76369 * 11 10 9 13 13 C 1.38576 * 120.39966 * 0.51845 * 12 11 10 14 14 C 1.37825 * 120.32267 * 359.74189 * 13 12 11 15 15 C 1.39661 * 119.92276 * 359.97438 * 14 13 12 16 16 C 1.47541 * 120.20080 * 180.02562 * 15 14 13 17 17 O 1.21587 * 120.00159 * 155.67376 * 16 15 14 18 18 N 1.34774 * 119.99676 * 335.67936 * 16 15 14 19 19 C 1.47063 * 136.05986 * 354.15608 * 18 16 15 20 20 C 1.53232 * 88.08636 * 207.21363 * 19 18 16 21 21 F 1.39901 * 114.32625 * 220.47244 * 20 19 18 22 22 F 1.39897 * 114.02017 * 87.71589 * 20 19 18 23 23 C 1.47070 * 136.05531 * 174.53901 * 18 16 15 24 24 H 0.97003 * 120.00108 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.96119 * 0.02562 * 11 10 9 26 26 H 1.07998 * 119.80343 * 180.25487 * 12 11 10 27 27 H 1.08004 * 119.83650 * 179.75777 * 13 12 11 28 28 H 1.08004 * 120.03960 * 179.97438 * 14 13 12 29 29 H 1.09006 * 113.47184 * 321.94583 * 19 18 16 30 30 H 1.08998 * 113.46613 * 92.38083 * 19 18 16 31 31 H 1.08996 * 113.46530 * 267.61520 * 23 18 16 32 32 H 1.08996 * 113.46577 * 38.05780 * 23 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0087 -1.2012 -0.0005 8 1 3.0886 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0065 10 6 2.0685 -3.5024 -0.1189 11 6 3.4554 -3.4397 -0.1055 12 6 4.2011 -4.5959 -0.2152 13 6 3.5743 -5.8244 -0.3501 14 6 2.1986 -5.9051 -0.3708 15 6 1.4308 -4.7443 -0.2548 16 6 -0.0424 -4.8237 -0.2757 17 8 -0.7058 -3.9491 0.2471 18 7 -0.6526 -5.8657 -0.8742 19 6 -0.2286 -7.0221 -1.6778 20 6 -1.6135 -7.0092 -2.3334 21 9 -2.1662 -8.2780 -2.5377 22 9 -1.7056 -6.1758 -3.4533 23 6 -2.0363 -6.3431 -1.0167 24 1 -0.4850 0.8401 0.0004 25 1 3.9512 -2.4855 -0.0048 26 1 5.2796 -4.5424 -0.2001 27 1 4.1668 -6.7230 -0.4392 28 1 1.7149 -6.8650 -0.4765 29 1 0.5808 -6.7952 -2.3718 30 1 -0.0374 -7.9163 -1.0845 31 1 -2.3316 -7.0546 -0.2456 32 1 -2.7610 -5.5399 -1.1497 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782856345.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:47 Heat of formation + Delta-G solvation = -78.580744 kcal Electronic energy + Delta-G solvation = -21989.775262 eV Core-core repulsion = 18168.228169 eV Total energy + Delta-G solvation = -3821.547093 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.91851 -47.31614 -40.02471 -38.81368 -36.82764 -36.42817 -32.41794 -31.04371 -29.06872 -28.53099 -26.59764 -25.42707 -23.36661 -21.78910 -21.39026 -19.36908 -18.13885 -17.92769 -17.40480 -16.88396 -16.50461 -15.95864 -15.17387 -14.97618 -14.71388 -14.24579 -14.16326 -13.98363 -13.81372 -13.56590 -13.54486 -12.96362 -12.80860 -12.68283 -12.51993 -12.20589 -11.77567 -11.40451 -11.20429 -10.94528 -10.90092 -10.57425 -10.49116 -9.69918 -9.15756 -8.93788 -8.69616 -8.37462 -7.40401 -6.51434 -4.11796 1.62318 2.23420 2.78566 3.08449 3.10559 3.13388 3.18158 3.38814 3.48903 3.88527 4.38696 4.53146 4.60776 4.85874 4.99338 5.08902 5.09566 5.19211 5.43613 5.44386 5.57960 5.68699 5.78577 6.04028 6.05933 6.48224 6.61538 6.84623 6.97769 7.16512 7.22298 7.60492 7.81718 7.90121 8.75262 8.88917 9.57667 10.62693 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.005300 C = 0.004439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.525328 B = 5281.307517 C = 6305.756746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.403 4.403 8 H 0.095 0.905 9 O -0.131 6.131 10 C 0.191 3.809 11 C -0.235 4.235 12 C -0.049 4.049 13 C -0.229 4.229 14 C -0.039 4.039 15 C -0.224 4.224 16 C 0.601 3.399 17 O -0.490 6.490 18 N -0.647 5.647 19 C 0.073 3.927 20 C 0.242 3.758 21 F -0.180 7.180 22 F -0.164 7.164 23 C 0.078 3.922 24 H 0.273 0.727 25 H 0.133 0.867 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.761 -13.540 -3.229 14.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.479 4.479 8 H 0.113 0.887 9 O -0.029 6.029 10 C 0.131 3.869 11 C -0.255 4.255 12 C -0.067 4.067 13 C -0.248 4.248 14 C -0.058 4.058 15 C -0.229 4.229 16 C 0.395 3.605 17 O -0.362 6.362 18 N -0.388 5.388 19 C -0.052 4.052 20 C 0.204 3.796 21 F -0.161 7.161 22 F -0.145 7.145 23 C -0.046 4.046 24 H 0.084 0.916 25 H 0.151 0.849 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.012 -12.540 -2.799 12.888 hybrid contribution 0.477 0.600 -0.216 0.796 sum 1.489 -11.940 -3.015 12.404 Atomic orbital electron populations 1.70097 1.06067 1.28095 1.42388 1.25412 0.95835 0.99069 0.96008 0.85756 0.78776 0.79442 0.79317 1.19298 1.20098 1.19278 1.21454 0.91929 0.80875 1.53623 0.88735 1.84112 1.33926 1.11242 1.73616 1.19214 0.89954 0.87159 0.90570 1.21148 0.93182 0.99458 1.11662 1.20924 0.98752 0.92261 0.94775 1.20480 0.93940 0.97243 1.13181 1.20869 0.93843 0.95699 0.95354 1.18568 0.90709 0.92603 1.21029 1.17796 0.87524 0.78419 0.76800 1.90933 1.65973 1.35630 1.43709 1.49105 1.08031 1.24867 1.56765 1.23946 0.95993 0.91445 0.93785 1.21968 0.97198 0.75855 0.84604 1.93029 1.87007 1.40059 1.96036 1.93076 1.96752 1.70598 1.54063 1.23852 0.88478 0.99244 0.93058 0.91644 0.84897 0.87005 0.87094 0.86774 0.87767 0.87016 0.87148 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -25.02 13.67 55.48 0.76 -24.27 16 2 C 0.04 1.23 5.49 -17.52 -0.10 1.14 16 3 Si 0.94 20.28 29.55 -169.99 -5.02 15.26 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.40 -11.28 9.49 30.90 0.29 -10.98 16 8 H 0.10 2.38 5.21 -52.49 -0.27 2.10 16 9 O -0.13 -3.82 8.13 -19.43 -0.16 -3.98 16 10 C 0.19 4.67 6.63 -38.60 -0.26 4.42 16 11 C -0.24 -4.94 9.16 -39.44 -0.36 -5.30 16 12 C -0.05 -0.83 10.03 -39.54 -0.40 -1.23 16 13 C -0.23 -3.63 10.02 -39.61 -0.40 -4.02 16 14 C -0.04 -0.66 8.86 -39.20 -0.35 -1.00 16 15 C -0.22 -4.84 5.85 -104.81 -0.61 -5.45 16 16 C 0.60 13.33 7.79 -12.47 -0.10 13.23 16 17 O -0.49 -13.42 16.34 -14.93 -0.24 -13.67 16 18 N -0.65 -10.70 3.64 -186.67 -0.68 -11.38 16 19 C 0.07 0.85 5.91 -8.65 -0.05 0.79 16 20 C 0.24 2.92 3.58 -26.35 -0.09 2.83 16 21 F -0.18 -2.00 17.45 2.25 0.04 -1.96 16 22 F -0.16 -2.42 17.44 2.25 0.04 -2.38 16 23 C 0.08 1.01 8.43 -8.51 -0.07 0.94 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 26 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 27 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.11 1.50 5.69 -52.48 -0.30 1.20 16 29 H 0.10 1.17 7.80 -51.93 -0.40 0.76 16 30 H 0.11 0.91 7.90 -51.93 -0.41 0.50 16 31 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 291.71 15.07 4.40 4.40 Total: -1.00 -34.53 291.71 -5.87 -40.40 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.51 Total: 2.21 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -2.49 Total: -4.64 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.08 Total: -35.64 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.40 Total: -17.65 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.53 -5.87 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782856345.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.179 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds