Wall clock time and date at job start Tue Mar 31 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86792 * 119.99578 * 2 1 4 4 H 1.48503 * 109.46843 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47725 * 299.99967 * 3 2 1 6 6 H 1.48508 * 109.47290 * 60.00308 * 3 2 1 7 7 C 1.37874 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99902 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00143 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47035 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00038 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99875 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47137 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.47411 * 55.00017 * 14 13 11 16 16 O 1.42906 * 109.47205 * 294.99818 * 14 13 11 17 17 C 1.50696 * 109.47396 * 174.99920 * 14 13 11 18 18 C 1.38247 * 119.98658 * 265.00270 * 17 14 13 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 14 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98930 * 359.40143 * 22 20 19 24 24 H 0.96992 * 120.00217 * 359.97438 * 1 2 3 25 25 H 1.09010 * 109.46987 * 59.99948 * 9 7 2 26 26 H 1.08995 * 109.47256 * 300.00282 * 9 7 2 27 27 H 0.96998 * 120.00666 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.47543 * 59.99723 * 13 11 10 29 29 H 1.09003 * 109.46922 * 299.99788 * 13 11 10 30 30 H 0.96695 * 113.99566 * 299.99644 * 16 14 13 31 31 H 1.08003 * 119.99321 * 359.97438 * 18 17 14 32 32 H 1.08002 * 120.00776 * 180.02562 * 19 18 17 33 33 H 1.08000 * 120.00661 * 179.71600 * 22 20 19 34 34 H 1.07997 * 119.99445 * 180.32231 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 7 2.2031 -3.6126 -0.0027 11 6 1.7540 -4.8833 -0.0033 12 8 0.5616 -5.1050 -0.0035 13 6 2.7333 -6.0287 -0.0038 14 6 1.9683 -7.3538 -0.0051 15 1 1.2765 -7.3731 -0.8472 16 8 1.2365 -7.4826 1.2156 17 6 2.9429 -8.4964 -0.1294 18 6 3.2211 -9.0353 -1.3717 19 6 4.1153 -10.0829 -1.4864 20 6 4.7317 -10.5927 -0.3575 21 17 5.8555 -11.9081 -0.5010 22 6 4.4481 -10.0572 0.8862 23 6 3.5587 -9.0052 0.9989 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8879 27 1 3.1568 -3.4354 -0.0022 28 1 3.3599 -5.9714 0.8863 29 1 3.3600 -5.9705 -0.8937 30 1 1.7898 -7.4733 2.0086 31 1 2.7395 -8.6375 -2.2528 32 1 4.3328 -10.5035 -2.4571 33 1 4.9255 -10.4577 1.7683 34 1 3.3412 -8.5837 1.9692 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787621535.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:41 Heat of formation + Delta-G solvation = -82.359527 kcal Electronic energy + Delta-G solvation = -18856.088849 eV Core-core repulsion = 15586.174576 eV Total energy + Delta-G solvation = -3269.914273 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.15349 -38.79578 -37.14691 -36.33349 -34.14517 -32.41264 -32.07627 -31.33690 -29.83109 -27.15530 -24.58007 -23.17596 -22.46974 -21.22032 -19.69865 -18.12571 -17.13412 -16.38740 -16.22779 -15.74762 -15.30096 -15.03393 -14.94849 -14.33578 -13.91892 -13.85132 -13.75871 -13.65730 -12.77154 -12.53988 -12.22733 -12.00305 -11.86320 -11.78556 -11.39533 -11.19143 -11.03886 -10.96706 -10.90560 -10.34443 -10.21466 -9.38971 -9.38591 -9.12664 -8.81043 -8.74797 -7.87723 -6.17835 -4.24868 0.76738 0.94816 1.79898 3.22210 3.24137 3.29403 3.32297 3.37640 3.96111 4.31787 4.37886 4.44607 4.53914 4.60918 4.85525 4.97796 5.05415 5.17451 5.19113 5.33499 5.54482 5.55971 5.70691 5.80176 5.87787 5.88750 6.26057 6.43195 7.30352 7.44020 7.51424 7.63132 7.65536 7.96260 8.62284 8.77552 9.11121 9.42067 10.92404 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.036687 B = 0.002701 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.033918 B =10364.911226 C =10741.985003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.716 5.716 11 C 0.497 3.503 12 O -0.541 6.541 13 C -0.172 4.172 14 C 0.165 3.835 15 H 0.117 0.883 16 O -0.534 6.534 17 C -0.106 4.106 18 C -0.097 4.097 19 C -0.108 4.108 20 C -0.038 4.038 21 Cl -0.075 7.075 22 C -0.107 4.107 23 C -0.100 4.100 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.389 0.611 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.366 0.634 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.984 -20.809 -0.248 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.364 5.364 11 C 0.281 3.719 12 O -0.419 6.419 13 C -0.212 4.212 14 C 0.105 3.895 15 H 0.135 0.865 16 O -0.338 6.338 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.065 4.065 21 Cl -0.046 7.046 22 C -0.126 4.126 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.212 0.788 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.530 -20.950 -0.673 23.457 hybrid contribution 1.627 0.943 0.317 1.907 sum 12.157 -20.007 -0.356 23.414 Atomic orbital electron populations 1.69987 1.06102 1.27201 1.48961 1.24963 0.94919 0.99478 0.94726 0.86365 0.79806 0.82983 0.77770 1.19653 1.20788 1.20789 1.21265 0.93262 0.90489 1.53101 0.91901 1.19095 0.88319 0.81991 0.97719 1.46476 1.11011 1.06195 1.72747 1.20227 0.89419 0.84203 0.78048 1.90710 1.16560 1.84660 1.49925 1.22450 0.99307 0.94644 1.04838 1.20552 0.91061 0.88206 0.89656 0.86513 1.86807 1.36521 1.95860 1.14645 1.20863 0.97840 0.98148 0.93770 1.21028 0.97394 0.95531 0.97553 1.21065 0.96803 0.96958 0.97809 1.20957 0.96611 0.93526 0.95389 1.98372 1.60665 1.47224 1.98341 1.21018 0.98651 0.96725 0.96167 1.20889 0.95964 0.96183 0.98779 0.92487 0.95603 0.95547 0.77849 0.89003 0.88398 0.78761 0.84603 0.84794 0.84843 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.64 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.58 5.43 -5.19 -0.03 6.55 16 10 N -0.72 -14.66 5.55 -61.47 -0.34 -15.00 16 11 C 0.50 9.46 7.71 -10.99 -0.08 9.37 16 12 O -0.54 -12.78 15.42 -8.87 -0.14 -12.91 16 13 C -0.17 -2.15 5.36 -27.89 -0.15 -2.30 16 14 C 0.17 2.03 2.76 -27.89 -0.08 1.95 16 15 H 0.12 1.61 7.86 -51.93 -0.41 1.20 16 16 O -0.53 -7.41 12.37 -49.66 -0.61 -8.03 16 17 C -0.11 -1.04 5.01 -104.62 -0.52 -1.57 16 18 C -0.10 -0.88 9.68 -39.59 -0.38 -1.26 16 19 C -0.11 -0.93 9.83 -39.55 -0.39 -1.32 16 20 C -0.04 -0.34 6.32 -39.50 -0.25 -0.59 16 21 Cl -0.07 -0.64 28.96 -51.86 -1.50 -2.14 16 22 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 23 C -0.10 -0.86 9.33 -39.59 -0.37 -1.23 16 24 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.76 8.14 -51.92 -0.42 0.33 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.77 8.32 -40.82 -0.34 6.43 16 28 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.37 3.55 7.39 45.56 0.34 3.89 16 31 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.13 0.87 6.61 -52.49 -0.35 0.52 16 LS Contribution 315.26 15.07 4.75 4.75 Total: -1.00 -33.59 315.26 -8.44 -42.03 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -3.25 Total: 5.92 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -3.06 Total: -5.01 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.40 Total: -40.32 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.75 Total: -20.94 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.50 Total: -2.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.59 -8.44 -42.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787621535.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.328 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds