Wall clock time and date at job start Tue Mar 31 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99955 * 2 1 4 4 H 1.48503 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47156 * 300.00223 * 3 2 1 6 6 H 1.48498 * 109.46837 * 60.00271 * 3 2 1 7 7 C 1.37874 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47020 * 180.02562 * 10 9 7 12 12 O 1.45209 * 109.47036 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99733 * 180.02562 * 12 11 10 14 14 O 1.20829 * 120.00125 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.50694 * 109.47575 * 179.97438 * 15 13 12 17 17 C 1.38233 * 119.60308 * 124.99717 * 16 15 13 18 18 C 1.38613 * 119.17625 * 180.02562 * 17 16 15 19 19 C 1.38780 * 118.40577 * 0.25575 * 18 17 16 20 20 Cl 1.73608 * 120.42624 * 179.72626 * 19 18 17 21 21 C 1.38302 * 119.13930 * 359.50003 * 19 18 17 22 22 N 1.31846 * 119.60674 * 305.02221 * 16 15 13 23 23 H 0.97004 * 119.99654 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46864 * 60.00639 * 9 7 2 25 25 H 1.08996 * 109.47050 * 300.00286 * 9 7 2 26 26 H 1.08999 * 109.47258 * 60.00581 * 10 9 7 27 27 H 1.08996 * 109.47455 * 300.00026 * 10 9 7 28 28 H 1.08991 * 109.47363 * 60.00073 * 11 10 9 29 29 H 1.09004 * 109.47240 * 300.00277 * 11 10 9 30 30 H 1.09004 * 109.47071 * 59.99222 * 15 13 12 31 31 H 1.08995 * 109.46890 * 299.99939 * 15 13 12 32 32 H 1.08002 * 120.41515 * 0.04798 * 17 16 15 33 33 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.62475 * 180.23223 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4239 -6.0907 -0.0006 13 6 1.9109 -7.3311 -0.0016 14 8 0.7130 -7.4894 -0.0024 15 6 2.8288 -8.5262 -0.0004 16 6 2.0081 -9.7900 -0.0012 17 6 2.2155 -10.7382 -0.9855 18 6 1.4552 -11.8973 -0.9781 19 6 0.5059 -12.0578 0.0214 20 17 -0.4800 -13.4857 0.0765 21 6 0.3587 -11.0676 0.9757 22 7 1.1005 -9.9780 0.9365 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8540 -5.0446 -0.8913 29 1 0.8533 -5.0450 0.8886 30 1 3.4564 -8.5014 0.8905 31 1 3.4589 -8.5011 -0.8894 32 1 2.9608 -10.5782 -1.7506 33 1 1.5952 -12.6551 -1.7347 34 1 -0.3751 -11.1861 1.7592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792704135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:41 Heat of formation + Delta-G solvation = -75.483248 kcal Electronic energy + Delta-G solvation = -18415.549685 eV Core-core repulsion = 15145.933590 eV Total energy + Delta-G solvation = -3269.616095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92992 -39.87871 -37.10346 -36.41073 -33.98767 -33.27850 -32.85013 -31.68303 -28.93770 -26.91695 -24.23637 -23.70624 -22.71777 -20.70772 -20.28172 -17.67023 -17.44594 -17.08864 -16.57005 -16.23515 -16.16719 -15.54619 -14.61644 -14.47008 -14.21406 -14.11036 -13.56703 -13.08812 -12.81577 -12.59491 -12.26921 -12.14598 -11.89191 -11.82475 -11.61679 -10.98117 -10.64479 -10.62146 -10.37163 -10.36509 -10.23930 -9.87216 -9.71236 -9.51187 -9.23456 -9.13839 -8.38932 -6.03342 -4.06345 0.45448 0.77172 1.60399 2.38212 2.78449 3.30201 3.36023 3.37814 3.42037 3.78279 4.18071 4.30663 4.43422 4.48460 4.67665 4.97897 4.99827 5.16764 5.19841 5.32689 5.46456 5.54386 5.60151 5.65617 6.02348 6.05595 6.51936 6.55154 6.86937 6.99651 7.51312 7.61055 7.71926 7.94812 7.97141 8.36303 9.00264 9.57996 11.08147 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.053876 B = 0.002272 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.590191 B =12321.066054 C =12648.035154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.023 3.977 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.359 6.359 13 C 0.460 3.540 14 O -0.495 6.495 15 C -0.066 4.066 16 C 0.141 3.859 17 C -0.150 4.150 18 C -0.066 4.066 19 C -0.092 4.092 20 Cl -0.057 7.057 21 C 0.123 3.877 22 N -0.441 5.441 23 H 0.261 0.739 24 H 0.019 0.981 25 H 0.019 0.981 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -27.247 -1.424 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.276 6.276 13 C 0.302 3.698 14 O -0.382 6.382 15 C -0.104 4.104 16 C 0.004 3.996 17 C -0.170 4.170 18 C -0.092 4.092 19 C -0.121 4.121 20 Cl -0.028 7.028 21 C -0.036 4.036 22 N -0.150 5.150 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.165 0.835 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 4.336 -26.606 -0.782 26.969 hybrid contribution 0.172 0.168 -0.663 0.705 sum 4.508 -26.438 -1.445 26.859 Atomic orbital electron populations 1.69979 1.06092 1.26643 1.50647 1.25042 0.94885 0.99396 0.95235 0.86489 0.80080 0.83562 0.77595 1.19665 1.20985 1.20979 1.21210 0.93156 0.90662 1.50830 0.92359 1.19061 0.93868 0.90785 0.97693 1.21762 0.99915 0.91000 1.01948 1.23494 0.91163 0.83476 1.02158 1.86473 1.42701 1.15043 1.83398 1.23017 0.88469 0.84799 0.73560 1.90700 1.16690 1.86662 1.44171 1.20232 0.96511 0.86349 1.07316 1.20727 0.93271 0.94651 0.90999 1.21960 1.01326 0.93943 0.99755 1.21503 0.93073 0.97817 0.96823 1.22158 0.97965 0.91942 1.00033 1.98388 1.68889 1.37379 1.98131 1.22812 0.96987 0.87242 0.96574 1.67624 1.03980 1.19589 1.23783 0.92948 0.96250 0.96217 0.92112 0.92167 0.91606 0.91477 0.85530 0.85848 0.83418 0.83521 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.11 -2.25 5.53 -26.73 -0.15 -2.40 16 11 C 0.07 1.30 5.47 37.16 0.20 1.50 16 12 O -0.36 -5.85 10.22 -39.25 -0.40 -6.25 16 13 C 0.46 6.81 7.89 36.00 0.28 7.09 16 14 O -0.50 -9.04 15.08 -18.75 -0.28 -9.32 16 15 C -0.07 -0.62 6.21 -29.04 -0.18 -0.80 16 16 C 0.14 1.47 5.76 -82.59 -0.48 1.00 16 17 C -0.15 -1.14 9.71 -39.44 -0.38 -1.52 16 18 C -0.07 -0.49 9.98 -39.24 -0.39 -0.88 16 19 C -0.09 -0.81 6.34 -39.36 -0.25 -1.06 16 20 Cl -0.06 -0.44 28.99 -51.86 -1.50 -1.95 16 21 C 0.12 1.27 10.99 -17.51 -0.19 1.07 16 22 N -0.44 -5.51 9.22 -9.45 -0.09 -5.60 16 23 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 24 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 29 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 30 H 0.13 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.12 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.15 0.65 7.95 -52.49 -0.42 0.23 16 33 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 34 H 0.17 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 320.06 15.07 4.82 4.82 Total: -1.00 -33.66 320.06 -7.99 -41.65 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.17 Total: -4.66 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -2.08 Total: -9.04 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.65 Total: -31.80 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.68 Total: -15.57 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.50 Total: -1.95 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.66 -7.99 -41.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792704135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.833 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds