Wall clock time and date at job start Tue Mar 31 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86810 * 119.99955 * 2 1 4 4 H 1.48503 * 109.46925 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47156 * 300.00223 * 3 2 1 6 6 H 1.48498 * 109.46837 * 60.00271 * 3 2 1 7 7 C 1.37874 * 120.00125 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99860 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46976 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47020 * 180.02562 * 10 9 7 12 12 O 1.45209 * 109.47036 * 180.02562 * 11 10 9 13 13 C 1.34229 * 116.99733 * 180.02562 * 12 11 10 14 14 O 1.20829 * 120.00125 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00070 * 180.02562 * 13 12 11 16 16 C 1.50694 * 109.47575 * 179.97438 * 15 13 12 17 17 C 1.38233 * 119.60308 * 124.99717 * 16 15 13 18 18 C 1.38613 * 119.17625 * 180.02562 * 17 16 15 19 19 C 1.38780 * 118.40577 * 0.25575 * 18 17 16 20 20 Cl 1.73608 * 120.42624 * 179.72626 * 19 18 17 21 21 C 1.38302 * 119.13930 * 359.50003 * 19 18 17 22 22 N 1.31846 * 119.60674 * 305.02221 * 16 15 13 23 23 H 0.97004 * 119.99654 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46864 * 60.00639 * 9 7 2 25 25 H 1.08996 * 109.47050 * 300.00286 * 9 7 2 26 26 H 1.08999 * 109.47258 * 60.00581 * 10 9 7 27 27 H 1.08996 * 109.47455 * 300.00026 * 10 9 7 28 28 H 1.08991 * 109.47363 * 60.00073 * 11 10 9 29 29 H 1.09004 * 109.47240 * 300.00277 * 11 10 9 30 30 H 1.09004 * 109.47071 * 59.99222 * 15 13 12 31 31 H 1.08995 * 109.46890 * 299.99939 * 15 13 12 32 32 H 1.08002 * 120.41515 * 0.04798 * 17 16 15 33 33 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 34 34 H 1.08004 * 119.62475 * 180.23223 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 8 2.4239 -6.0907 -0.0006 13 6 1.9109 -7.3311 -0.0016 14 8 0.7130 -7.4894 -0.0024 15 6 2.8288 -8.5262 -0.0004 16 6 2.0081 -9.7900 -0.0012 17 6 2.2155 -10.7382 -0.9855 18 6 1.4552 -11.8973 -0.9781 19 6 0.5059 -12.0578 0.0214 20 17 -0.4800 -13.4857 0.0765 21 6 0.3587 -11.0676 0.9757 22 7 1.1005 -9.9780 0.9365 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5566 -0.8904 25 1 0.6247 -2.5570 0.8896 26 1 2.8719 -3.6043 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8540 -5.0446 -0.8913 29 1 0.8533 -5.0450 0.8886 30 1 3.4564 -8.5014 0.8905 31 1 3.4589 -8.5011 -0.8894 32 1 2.9608 -10.5782 -1.7506 33 1 1.5952 -12.6551 -1.7347 34 1 -0.3751 -11.1861 1.7592 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000792704135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:41 Heat of formation + Delta-G solvation = -95.211000 kcal Electronic energy + Delta-G solvation = -18416.405145 eV Core-core repulsion = 15145.933590 eV Total energy + Delta-G solvation = -3270.471555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.81018 -40.92726 -37.91367 -37.59364 -35.92320 -34.10787 -33.60481 -33.48200 -29.90663 -28.65124 -25.40232 -24.83243 -23.79765 -22.15383 -21.75759 -18.84040 -18.46798 -18.13944 -17.97181 -17.55214 -17.13863 -16.55979 -16.41929 -15.76257 -15.30158 -14.81222 -14.52388 -14.26248 -14.05777 -13.93112 -13.70565 -13.32514 -13.19972 -12.86673 -12.77582 -12.49252 -12.34779 -12.24850 -12.05479 -11.77710 -11.40657 -11.39425 -11.20751 -10.88089 -10.58245 -10.56056 -9.90779 -8.21819 -6.33469 -0.21809 0.15471 0.96291 1.23701 1.41893 1.42320 1.55855 1.67505 2.41534 2.62907 3.09709 3.12152 3.56574 3.71385 3.76283 3.93154 4.00712 4.08597 4.13789 4.41314 4.42475 4.55110 4.63480 4.80769 4.83410 4.92098 4.95050 5.09026 5.41199 5.46754 5.57184 5.63862 5.80401 6.19095 6.75735 6.83040 6.83647 7.36251 8.90722 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.053876 B = 0.002272 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.590191 B =12321.066054 C =12648.035154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.093 4.093 11 C 0.080 3.920 12 O -0.356 6.356 13 C 0.456 3.544 14 O -0.536 6.536 15 C -0.056 4.056 16 C 0.116 3.884 17 C -0.137 4.137 18 C -0.066 4.066 19 C -0.095 4.095 20 Cl -0.051 7.051 21 C 0.101 3.899 22 N -0.483 5.483 23 H 0.264 0.736 24 H -0.004 1.004 25 H -0.006 1.006 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.147 0.853 31 H 0.168 0.832 32 H 0.188 0.812 33 H 0.176 0.824 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.508 -28.119 -2.487 29.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.013 4.013 10 C -0.130 4.130 11 C 0.007 3.993 12 O -0.273 6.273 13 C 0.300 3.700 14 O -0.424 6.424 15 C -0.093 4.093 16 C -0.022 4.022 17 C -0.157 4.157 18 C -0.092 4.092 19 C -0.124 4.124 20 Cl -0.022 7.022 21 C -0.057 4.057 22 N -0.192 5.192 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.012 0.988 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.164 0.836 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.194 0.806 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 6.798 -27.505 -1.842 28.393 hybrid contribution -0.633 0.327 -0.337 0.788 sum 6.165 -27.178 -2.179 27.954 Atomic orbital electron populations 1.70117 1.07956 1.27861 1.51615 1.26049 0.95805 1.03658 0.94646 0.85313 0.79163 0.78342 0.77704 1.18191 1.20397 1.20499 1.21659 0.93809 0.91771 1.50610 0.91479 1.18951 0.94335 0.92704 0.95311 1.21448 0.98649 0.90225 1.02707 1.23059 0.90979 0.83885 1.01409 1.86466 1.41748 1.15372 1.83691 1.24185 0.88949 0.85066 0.71786 1.90692 1.18817 1.86905 1.46035 1.20462 0.95565 0.82965 1.10295 1.21050 0.93621 0.95762 0.91750 1.22350 1.01318 0.92801 0.99203 1.21918 0.92088 0.98461 0.96698 1.22241 0.98313 0.91743 1.00099 1.98388 1.68861 1.36870 1.98128 1.22910 0.97515 0.87671 0.97628 1.67541 1.05364 1.20784 1.25531 0.92710 0.98584 0.98768 0.91412 0.91132 0.92182 0.92589 0.83562 0.81494 0.79520 0.80633 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.54 -30.65 9.11 25.60 0.23 -30.41 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.28 4.97 29.85 0.15 1.43 16 10 C -0.09 -3.84 5.53 30.59 0.17 -3.67 16 11 C 0.08 3.02 5.47 71.98 0.39 3.41 16 12 O -0.36 -11.21 10.22 -51.40 -0.53 -11.74 16 13 C 0.46 13.05 7.89 71.23 0.56 13.61 16 14 O -0.54 -19.77 15.08 21.96 0.33 -19.43 16 15 C -0.06 -0.90 6.21 29.10 0.18 -0.72 16 16 C 0.12 2.19 5.76 42.55 0.25 2.44 16 17 C -0.14 -1.64 9.71 22.36 0.22 -1.42 16 18 C -0.07 -0.80 9.98 22.49 0.22 -0.58 16 19 C -0.10 -1.57 6.34 22.41 0.14 -1.43 16 20 Cl -0.05 -0.75 28.99 -2.72 -0.08 -0.83 16 21 C 0.10 2.11 10.99 84.70 0.93 3.04 16 22 N -0.48 -12.01 9.22 -183.80 -1.70 -13.71 16 23 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 24 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 25 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.06 2.31 8.13 -2.39 -0.02 2.29 16 29 H 0.06 2.21 8.13 -2.38 -0.02 2.19 16 30 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.17 1.19 7.87 -2.39 -0.02 1.17 16 32 H 0.19 0.66 7.95 -2.91 -0.02 0.63 16 33 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 34 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -74.90 320.06 5.35 -69.54 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: 1.10 Total: 1.24 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: 3.91 Total: -14.07 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -1.41 Total: -70.80 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.19 Total: -31.17 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -74.90 5.35 -69.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792704135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -74.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds