Wall clock time and date at job start Tue Mar 31 2020 05:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39679 * 120.12148 * 341.81798 * 3 2 1 5 5 C 1.37973 * 119.98495 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.22862 * 359.97438 * 5 4 3 7 7 C 1.38946 * 120.23189 * 359.76237 * 6 5 4 8 8 N 1.40123 * 119.99349 * 180.26328 * 7 6 5 9 9 C 1.35881 * 124.94964 * 359.96687 * 8 7 6 10 10 C 1.35336 * 107.14416 * 179.87312 * 9 8 7 11 11 C 1.41603 * 105.55368 * 0.38036 * 10 9 8 12 12 C 1.47477 * 126.44806 * 179.73867 * 11 10 9 13 13 O 1.21525 * 120.00555 * 0.02562 * 12 11 10 14 14 O 1.34770 * 119.99837 * 179.97438 * 12 11 10 15 15 C 1.34856 * 116.99986 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00113 * 359.97438 * 15 14 12 17 17 C 1.38803 * 120.00082 * 180.02562 * 15 14 12 18 18 N 1.31417 * 120.00160 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99747 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47115 * 89.99717 * 19 17 15 21 21 H 1.48500 * 109.47114 * 209.99711 * 19 17 15 22 22 H 1.48500 * 109.47480 * 330.00084 * 19 17 15 23 23 N 1.28480 * 124.95185 * 180.27861 * 8 7 6 24 24 C 1.38609 * 120.01557 * 0.51393 * 7 6 5 25 25 H 1.07998 * 120.00760 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.88494 * 179.97438 * 5 4 3 27 27 H 1.07997 * 119.87882 * 180.02562 * 6 5 4 28 28 H 1.07997 * 126.43318 * 0.02562 * 9 8 7 29 29 H 1.07996 * 127.22068 * 180.10204 * 10 9 8 30 30 H 0.96998 * 120.00150 * 180.02562 * 18 17 15 31 31 H 1.08002 * 120.11836 * 179.74795 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 -1.1469 0.3770 5 6 4.6491 -1.1433 0.3755 6 6 5.3419 -0.0068 0.0012 7 6 4.6535 1.1381 -0.3808 8 7 5.3606 2.2854 -0.7645 9 6 6.7149 2.3896 -0.7995 10 6 7.0078 3.6418 -1.2212 11 6 5.7582 4.2758 -1.4253 12 6 5.5430 5.6613 -1.8825 13 8 6.4954 6.3765 -2.1238 14 8 4.2900 6.1340 -2.0337 15 6 4.1632 7.4087 -2.4552 16 1 5.0436 8.0015 -2.6548 17 6 2.9013 7.9591 -2.6316 18 7 2.7777 9.2015 -3.0419 19 14 1.3786 6.9344 -2.2843 20 1 0.9816 7.1035 -0.8633 21 1 0.2695 7.3818 -3.1647 22 1 1.6740 5.5033 -2.5487 23 7 4.8228 3.3939 -1.1289 24 6 3.2674 1.1473 -0.3774 25 1 2.7319 -2.0370 0.6688 26 1 5.1899 -2.0314 0.6676 27 1 6.4218 -0.0104 0.0016 28 1 7.4245 1.6174 -0.5419 29 1 7.9888 4.0693 -1.3668 30 1 1.8959 9.5863 -3.1647 31 1 2.7306 2.0376 -0.6700 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798799111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:40 Heat of formation + Delta-G solvation = 75.176166 kcal Electronic energy + Delta-G solvation = -20122.053393 eV Core-core repulsion = 16757.862886 eV Total energy + Delta-G solvation = -3364.190507 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.84641 -39.82382 -38.92823 -36.79251 -35.38995 -33.82791 -32.35442 -32.10116 -30.67259 -29.75647 -26.12718 -24.66123 -24.20326 -22.10955 -21.63049 -19.66722 -19.39265 -17.98570 -17.44452 -16.71876 -16.61064 -16.17641 -15.80359 -15.07625 -14.62262 -14.43614 -14.25677 -13.90447 -13.77296 -13.60067 -13.24591 -13.10627 -12.76627 -12.41894 -12.25368 -12.07957 -11.91155 -11.34892 -10.75520 -10.59177 -10.40417 -10.23461 -9.72411 -9.56733 -9.41292 -9.24632 -8.70261 -8.49132 -6.41665 -4.13235 0.13364 0.51520 1.84871 2.13449 2.19060 2.42581 2.65232 3.23545 3.27458 3.41600 3.41909 3.44109 3.94455 3.98311 4.17570 4.26394 4.36852 4.48723 4.56262 4.68187 4.89919 5.05585 5.11973 5.32472 5.54961 5.62002 5.69309 5.74265 5.76892 6.02268 6.18605 6.58524 6.84395 7.13819 7.66558 7.90094 8.01787 8.57270 8.96180 9.65661 10.65627 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015413 B = 0.005094 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.179973 B = 5495.789647 C = 7302.117270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.253 3.747 3 C -0.002 4.002 4 C -0.078 4.078 5 C -0.094 4.094 6 C -0.104 4.104 7 C 0.152 3.848 8 N -0.251 5.251 9 C -0.023 4.023 10 C -0.167 4.167 11 C 0.052 3.948 12 C 0.484 3.516 13 O -0.528 6.528 14 O -0.230 6.230 15 C -0.376 4.376 16 H 0.113 0.887 17 C 0.070 3.930 18 N -0.865 5.865 19 Si 0.901 3.099 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.255 1.255 23 N -0.250 5.250 24 C -0.067 4.067 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.143 0.857 28 H 0.186 0.814 29 H 0.170 0.830 30 H 0.281 0.719 31 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 -24.090 7.947 26.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.078 5.078 2 C -0.063 4.063 3 C -0.006 4.006 4 C -0.100 4.100 5 C -0.113 4.113 6 C -0.125 4.125 7 C 0.061 3.939 8 N -0.033 5.033 9 C -0.161 4.161 10 C -0.193 4.193 11 C -0.108 4.108 12 C 0.329 3.671 13 O -0.421 6.421 14 O -0.136 6.136 15 C -0.451 4.451 16 H 0.131 0.869 17 C -0.135 4.135 18 N -0.504 5.504 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.179 1.179 23 N -0.083 5.083 24 C -0.089 4.089 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.203 0.797 29 H 0.188 0.812 30 H 0.092 0.908 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.936 -23.873 7.872 25.309 hybrid contribution 0.636 -0.032 0.034 0.638 sum 3.572 -23.906 7.906 25.431 Atomic orbital electron populations 1.81286 1.11882 1.06843 1.07827 1.25481 0.92432 0.94205 0.94205 1.15718 0.84679 0.95162 1.05065 1.21273 0.94410 0.96862 0.97407 1.20906 0.93398 0.97905 0.99078 1.21101 1.01101 0.91135 0.99205 1.17380 0.90901 0.84699 1.00956 1.42759 1.04740 1.08533 1.47277 1.22945 0.84718 1.00194 1.08232 1.21855 0.99168 0.92964 1.05327 1.21398 0.90552 0.93530 1.05359 1.18910 0.82682 0.84596 0.80923 1.90708 1.42615 1.57514 1.51293 1.83617 1.27953 1.31226 1.70794 1.20755 0.96489 0.83971 1.43923 0.86907 1.24541 0.98192 0.95524 0.95281 1.69589 1.25443 1.12614 1.42752 0.86262 0.80775 0.81639 0.78762 1.19704 1.20643 1.17885 1.73869 1.26180 0.92132 1.16071 1.21050 0.92065 0.98670 0.97112 0.84208 0.83629 0.83971 0.79673 0.81212 0.90820 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -5.50 18.54 41.84 0.78 -4.73 16 2 C 0.25 2.80 15.33 -22.48 -0.34 2.46 16 3 C 0.00 -0.02 5.73 -106.96 -0.61 -0.63 16 4 C -0.08 -0.43 9.75 -39.14 -0.38 -0.81 16 5 C -0.09 -0.40 10.02 -39.67 -0.40 -0.80 16 6 C -0.10 -0.63 9.43 -39.31 -0.37 -1.01 16 7 C 0.15 1.58 6.65 -83.67 -0.56 1.02 16 8 N -0.25 -3.43 3.52 -10.59 -0.04 -3.47 16 9 C -0.02 -0.26 10.78 -16.79 -0.18 -0.44 16 10 C -0.17 -2.49 10.80 -39.33 -0.42 -2.91 16 11 C 0.05 1.05 7.16 -82.78 -0.59 0.46 16 12 C 0.48 12.19 7.90 34.50 0.27 12.46 16 13 O -0.53 -14.30 16.17 -19.29 -0.31 -14.61 16 14 O -0.23 -6.40 8.58 -21.75 -0.19 -6.58 16 15 C -0.38 -11.37 10.11 30.94 0.31 -11.06 16 16 H 0.11 3.69 7.09 -52.49 -0.37 3.32 16 17 C 0.07 2.03 5.49 -17.52 -0.10 1.93 16 18 N -0.87 -25.73 13.96 55.49 0.77 -24.95 16 19 Si 0.90 22.24 28.62 -169.99 -4.86 17.38 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 23 N -0.25 -4.63 11.16 33.41 0.37 -4.26 16 24 C -0.07 -0.73 9.30 -38.97 -0.36 -1.09 16 25 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 26 H 0.15 0.16 8.06 -52.49 -0.42 -0.26 16 27 H 0.14 0.49 6.63 -52.49 -0.35 0.14 16 28 H 0.19 1.08 6.95 -52.49 -0.36 0.71 16 29 H 0.17 2.22 8.06 -52.49 -0.42 1.80 16 30 H 0.28 7.63 8.31 -40.82 -0.34 7.30 16 31 H 0.15 2.03 7.64 -52.49 -0.40 1.62 16 LS Contribution 301.10 15.07 4.54 4.54 Total: -1.00 -36.18 301.10 -4.56 -40.75 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: -1.89 Total: -3.64 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.74 Total: -0.42 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 1.89 Total: -37.41 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.50 Total: -21.20 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.86 Total: 17.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -36.18 -4.56 -40.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798799111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.924 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds