Wall clock time and date at job start Tue Mar 31 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35907 * 117.00423 * 2 1 4 4 C 1.38749 * 120.47177 * 359.97438 * 3 2 1 5 5 N 1.31821 * 120.68065 * 180.02562 * 4 3 2 6 6 C 1.31875 * 121.77678 * 359.73146 * 5 4 3 7 7 C 1.38203 * 120.89088 * 0.53471 * 6 5 4 8 8 C 1.50706 * 120.38941 * 179.74876 * 7 6 5 9 9 O 1.45194 * 109.47090 * 269.72514 * 8 7 6 10 10 C 1.34233 * 116.99930 * 179.97438 * 9 8 7 11 11 O 1.20825 * 119.99777 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00152 * 179.97438 * 10 9 8 13 13 S 1.80999 * 109.46931 * 180.02562 * 12 10 9 14 14 C 1.76204 * 99.99576 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00256 * 0.02562 * 14 13 12 16 16 C 1.38802 * 119.99553 * 180.02562 * 14 13 12 17 17 N 1.31629 * 120.00537 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99725 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47256 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47218 * 120.00091 * 18 16 14 21 21 H 1.48501 * 109.47408 * 240.00051 * 18 16 14 22 22 C 1.38577 * 119.22396 * 359.47723 * 7 6 5 23 23 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.46699 * 299.99759 * 1 2 3 25 25 H 1.09000 * 109.47085 * 59.99863 * 1 2 3 26 26 H 1.08000 * 119.66051 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.55192 * 180.26574 * 6 5 4 28 28 H 1.09001 * 109.46953 * 29.72206 * 8 7 6 29 29 H 1.09000 * 109.47318 * 149.71804 * 8 7 6 30 30 H 1.09003 * 109.47034 * 300.00045 * 12 10 9 31 31 H 1.08995 * 109.46952 * 60.00188 * 12 10 9 32 32 H 0.96993 * 120.00386 * 179.97438 * 17 16 14 33 33 H 1.08004 * 120.81391 * 180.22584 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3001 2.3808 -0.0005 5 7 1.8943 3.5574 -0.0010 6 6 3.2081 3.6720 0.0042 7 6 4.0179 2.5521 -0.0006 8 6 5.5181 2.6961 -0.0002 9 8 6.0003 2.7416 -1.3690 10 6 7.3249 2.8692 -1.5446 11 8 8.0573 2.9401 -0.5862 12 6 7.8988 2.9229 -2.9370 13 16 9.6980 3.0958 -2.8417 14 6 10.0931 3.1327 -4.5585 15 1 9.3070 3.0572 -5.2953 16 6 11.4146 3.2590 -4.9639 17 7 12.3726 3.3516 -4.0660 18 14 11.8335 3.2974 -6.7839 19 1 10.5866 3.1778 -7.5815 20 1 12.5078 4.5797 -7.1097 21 1 12.7391 2.1658 -7.1075 22 6 3.4344 1.2952 0.0000 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 0.2214 2.3268 -0.0005 27 1 3.6571 4.6542 0.0079 28 1 5.7945 3.6171 0.5131 29 1 5.9647 1.8453 0.5143 30 1 7.6501 2.0041 -3.4682 31 1 7.4792 3.7758 -3.4703 32 1 13.2960 3.4394 -4.3493 33 1 4.0428 0.4028 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808501017.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:41 Heat of formation + Delta-G solvation = -86.761808 kcal Electronic energy + Delta-G solvation = -18459.704103 eV Core-core repulsion = 15191.642639 eV Total energy + Delta-G solvation = -3268.061464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06251 -40.02757 -38.52047 -36.28100 -33.38937 -32.49639 -31.27568 -29.77774 -28.08041 -26.62302 -25.54217 -23.91361 -22.19577 -21.02302 -18.36412 -17.94823 -17.54793 -17.17936 -17.02794 -16.27090 -16.11276 -15.79159 -14.85681 -14.64644 -14.21572 -14.03328 -13.79449 -13.53539 -13.42311 -12.77627 -12.66931 -12.37305 -12.18818 -12.01836 -11.92077 -11.10302 -11.09023 -10.83049 -10.60813 -10.25953 -9.92586 -9.81446 -9.77617 -9.13386 -8.82053 -8.37349 -6.61808 -6.28595 -4.01300 0.59868 0.94604 2.59028 2.60995 2.76796 3.19231 3.22208 3.28354 3.39717 3.64397 4.08944 4.13856 4.24406 4.42492 4.60191 4.63826 4.68977 4.75545 4.93012 5.04267 5.07465 5.09829 5.29311 5.36461 5.55729 5.58326 5.75877 5.86634 6.06668 6.09354 6.59710 6.78569 7.54829 7.58131 8.10797 8.29603 9.17176 10.78963 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.002744 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.408429 B =10200.194318 C =10490.920861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.311 6.311 3 C 0.074 3.926 4 C 0.023 3.977 5 N -0.451 5.451 6 C 0.087 3.913 7 C -0.101 4.101 8 C 0.110 3.890 9 O -0.356 6.356 10 C 0.480 3.520 11 O -0.486 6.486 12 C -0.128 4.128 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.922 3.078 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.084 4.084 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.159 0.841 27 H 0.163 0.837 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.269 0.731 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.900 -4.342 8.189 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.223 6.223 3 C 0.026 3.974 4 C -0.135 4.135 5 N -0.159 5.159 6 C -0.071 4.071 7 C -0.103 4.103 8 C 0.035 3.965 9 O -0.274 6.274 10 C 0.322 3.678 11 O -0.371 6.371 12 C -0.276 4.276 13 S 0.168 5.832 14 C -0.683 4.683 15 H 0.095 0.905 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.748 3.252 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.111 4.111 23 H 0.122 0.878 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.176 0.824 27 H 0.180 0.820 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -22.276 -3.698 9.452 24.479 hybrid contribution -0.272 -0.742 -2.096 2.240 sum -22.548 -4.439 7.356 24.129 Atomic orbital electron populations 1.23143 0.77849 1.04514 1.01618 1.86098 1.21745 1.25876 1.88550 1.20018 0.92987 0.85881 0.98499 1.22984 1.00633 0.87259 1.02592 1.67612 1.11868 1.26347 1.10086 1.22667 0.88527 0.98808 0.97077 1.20421 0.95589 0.93416 1.00895 1.21629 0.88560 1.04095 0.82197 1.86589 1.26056 1.84413 1.30345 1.23349 0.79545 0.72397 0.92552 1.90677 1.59705 1.44206 1.42540 1.23311 1.05553 1.06560 0.92203 1.85416 0.90655 1.95909 1.11237 1.22883 0.95619 1.58696 0.91135 0.90516 1.25010 0.95134 0.94340 0.99072 1.70015 1.00448 1.46249 1.33515 0.86064 0.78568 0.77950 0.82618 1.19498 1.20501 1.20505 1.20891 0.91793 0.98545 0.99838 0.87774 0.92350 0.92281 0.82366 0.81999 0.89465 0.89775 0.87865 0.87819 0.92106 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.80 10.51 -19.45 -0.20 -3.01 16 3 C 0.07 0.74 6.71 -39.07 -0.26 0.48 16 4 C 0.02 0.23 10.22 -17.37 -0.18 0.05 16 5 N -0.45 -5.16 10.36 -13.13 -0.14 -5.30 16 6 C 0.09 0.96 10.85 -17.55 -0.19 0.77 16 7 C -0.10 -1.13 5.54 -104.51 -0.58 -1.71 16 8 C 0.11 1.35 5.61 36.01 0.20 1.55 16 9 O -0.36 -5.50 10.20 -39.27 -0.40 -5.90 16 10 C 0.48 8.96 7.98 36.01 0.29 9.25 16 11 O -0.49 -10.31 15.61 -18.75 -0.29 -10.60 16 12 C -0.13 -2.58 6.27 36.01 0.23 -2.36 16 13 S -0.06 -1.54 20.58 -107.50 -2.21 -3.76 16 14 C -0.54 -14.93 9.50 30.94 0.29 -14.64 16 15 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.63 13.22 55.49 0.73 -24.90 16 18 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.08 -0.90 9.81 -39.14 -0.38 -1.28 16 23 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.21 7.68 -51.93 -0.40 -0.19 16 25 H 0.06 0.23 7.68 -51.93 -0.40 -0.16 16 26 H 0.16 1.07 6.32 -52.49 -0.33 0.73 16 27 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 28 H 0.09 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.08 0.98 8.09 -51.93 -0.42 0.56 16 30 H 0.10 1.93 8.14 -51.91 -0.42 1.51 16 31 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 32 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -33.64 313.66 -6.12 -39.76 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -3.63 Total: -2.28 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 0.31 Total: -4.81 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 0.60 Total: -30.19 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.90 Total: -19.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.64 -6.12 -39.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808501017.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.999 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds