Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48494 * 109.46895 * 270.00074 * 3 2 1 5 5 H 1.48492 * 109.47139 * 30.00182 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00134 * 3 2 1 7 7 C 1.40055 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00204 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99805 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00430 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00420 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47141 * 59.99727 * 13 12 11 15 15 O 1.42901 * 109.47043 * 299.99957 * 13 12 11 16 16 C 1.53001 * 109.47374 * 179.97438 * 13 12 11 17 17 C 1.50693 * 109.47605 * 184.99790 * 16 13 12 18 18 C 1.38263 * 119.99161 * 89.99509 * 17 16 13 19 19 C 1.38227 * 120.02488 * 179.72424 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.00894 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99673 * 270.27943 * 17 16 13 24 24 H 0.96995 * 119.99839 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99869 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.47299 * 59.99847 * 12 11 9 27 27 H 1.08998 * 109.46750 * 299.99529 * 12 11 9 28 28 H 0.96708 * 114.00018 * 299.99654 * 15 13 12 29 29 H 1.08998 * 109.46818 * 64.99807 * 16 13 12 30 30 H 1.09001 * 109.47102 * 305.00256 * 16 13 12 31 31 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.98919 * 180.30242 * 19 18 17 33 33 H 1.07993 * 120.00600 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.00565 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0463 -1.4000 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0005 12 6 1.2163 -4.9165 -0.0011 13 6 2.2105 -6.0794 -0.0003 14 1 2.8365 -6.0217 0.8901 15 8 3.0329 -6.0037 -1.1665 16 6 1.4455 -7.4045 -0.0003 17 6 2.4199 -8.5472 0.1242 18 6 2.7760 -9.0187 1.3742 19 6 3.6654 -10.0706 1.4891 20 6 4.2038 -10.6479 0.3544 21 6 3.8520 -10.1731 -0.8964 22 17 4.5282 -10.8971 -2.3218 23 6 2.9619 -9.1198 -1.0107 24 1 -0.4849 0.8400 0.0004 25 1 2.9188 -3.6478 -0.0002 26 1 0.5899 -4.9740 -0.8913 27 1 0.5894 -4.9744 0.8887 28 1 2.5414 -6.0491 -1.9981 29 1 0.8881 -7.5022 -0.9319 30 1 0.7529 -7.4241 0.8412 31 1 2.3554 -8.5682 2.2611 32 1 3.9395 -10.4417 2.4657 33 1 4.8990 -11.4695 0.4443 34 1 2.6869 -8.7486 -1.9869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834801389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -86.268429 kcal Electronic energy + Delta-G solvation = -18951.164885 eV Core-core repulsion = 15681.081110 eV Total energy + Delta-G solvation = -3270.083776 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.78224 -38.01429 -36.78304 -36.44717 -33.11867 -32.87078 -32.15435 -30.94161 -29.32691 -26.78570 -25.04265 -22.88599 -22.08100 -21.21559 -19.64383 -17.38916 -17.16354 -16.24865 -16.07712 -15.54191 -15.34053 -15.16091 -14.45047 -14.05338 -13.97242 -13.71664 -13.34258 -13.13915 -12.93070 -12.25078 -12.10264 -11.72534 -11.67674 -11.45430 -11.34103 -11.15762 -11.04168 -10.90747 -10.75840 -10.46180 -10.23834 -9.93387 -9.05879 -8.84696 -8.81434 -7.62237 -7.50474 -6.18253 -4.63098 0.95628 1.07595 1.93191 3.15087 3.21801 3.25483 3.40676 4.10179 4.32202 4.51877 4.59230 4.62412 4.77754 4.85067 5.02298 5.06102 5.20750 5.33685 5.36243 5.48250 5.62259 5.69895 5.80678 5.88189 6.01253 6.10942 6.30635 6.32077 6.46609 6.59984 7.44551 7.74808 7.96118 8.10831 8.34460 9.03432 9.55035 10.60470 10.78956 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.002880 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.370235 B = 9720.118386 C = 9979.836189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.762 5.762 12 C 0.103 3.897 13 C 0.104 3.896 14 H 0.101 0.899 15 O -0.553 6.553 16 C -0.114 4.114 17 C -0.056 4.056 18 C -0.114 4.114 19 C -0.107 4.107 20 C -0.120 4.120 21 C -0.033 4.033 22 Cl -0.076 7.076 23 C -0.095 4.095 24 H 0.268 0.732 25 H 0.385 0.615 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.373 0.627 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 -20.522 0.263 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.418 5.418 12 C -0.023 4.023 13 C 0.044 3.956 14 H 0.119 0.881 15 O -0.358 6.358 16 C -0.152 4.152 17 C -0.057 4.057 18 C -0.133 4.133 19 C -0.125 4.125 20 C -0.138 4.138 21 C -0.060 4.060 22 Cl -0.047 7.047 23 C -0.114 4.114 24 H 0.079 0.921 25 H 0.217 0.783 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.631 -20.437 0.585 21.494 hybrid contribution 0.507 0.622 -0.496 0.944 sum 7.138 -19.814 0.089 21.061 Atomic orbital electron populations 1.70024 1.07067 1.27229 1.35507 1.25717 0.94621 1.00314 0.92603 0.86365 0.80156 0.81350 0.78841 1.19738 1.20487 1.18892 1.20895 0.93634 0.89391 1.54250 0.91406 1.18230 0.87167 0.82493 0.76322 1.90593 1.14139 1.86922 1.55078 1.46024 1.08855 1.04338 1.82632 1.21534 0.94241 0.85186 1.01308 1.22167 0.92366 0.91489 0.89555 0.88119 1.86589 1.37133 1.96392 1.15723 1.21357 0.96730 0.92720 1.04432 1.19733 0.97294 0.96118 0.92506 1.21210 0.97960 0.96734 0.97347 1.21080 0.96986 0.96307 0.98168 1.21013 1.01050 1.01037 0.90744 1.20914 0.99481 0.97670 0.87887 1.98368 1.84388 1.82638 1.39337 1.20914 0.96327 0.94645 0.99488 0.92146 0.78321 0.93168 0.92622 0.78024 0.90030 0.89245 0.85307 0.85187 0.85259 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.20 11.83 55.55 0.66 -22.54 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.27 29.56 -169.99 -5.02 15.25 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.54 9.54 -35.63 -0.34 -15.88 16 8 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 9 C 0.55 15.82 7.75 -12.99 -0.10 15.72 16 10 O -0.58 -18.92 15.02 5.20 0.08 -18.85 16 11 N -0.76 -16.94 5.44 -61.72 -0.34 -17.28 16 12 C 0.10 1.84 5.34 -4.04 -0.02 1.82 16 13 C 0.10 1.36 3.04 -26.73 -0.08 1.28 16 14 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 15 O -0.55 -7.52 12.57 -35.23 -0.44 -7.96 16 16 C -0.11 -1.18 5.03 -27.89 -0.14 -1.32 16 17 C -0.06 -0.58 4.97 -104.63 -0.52 -1.10 16 18 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 19 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 20 C -0.12 -1.11 9.83 -39.55 -0.39 -1.50 16 21 C -0.03 -0.35 6.32 -39.50 -0.25 -0.59 16 22 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 23 C -0.10 -1.01 9.17 -39.55 -0.36 -1.37 16 24 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 25 H 0.38 7.86 8.33 -40.82 -0.34 7.52 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.37 4.09 9.05 45.56 0.41 4.50 16 29 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 317.27 15.07 4.78 4.78 Total: -1.00 -35.06 317.27 -8.14 -43.21 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.27 Total: 9.07 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -3.08 Total: -3.41 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.32 Total: -39.82 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.36 Total: -26.81 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.06 -8.14 -43.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834801389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.060 kcal (2) G-P(sol) polarization free energy of solvation -35.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds