Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 120.00160 * 2 1 4 4 H 1.48494 * 109.46895 * 270.00074 * 3 2 1 5 5 H 1.48492 * 109.47139 * 30.00182 * 3 2 1 6 6 H 1.48504 * 109.46965 * 150.00134 * 3 2 1 7 7 C 1.40055 * 119.99697 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00204 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99805 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00430 * 180.02562 * 9 7 2 12 12 C 1.46500 * 120.00420 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.09003 * 109.47141 * 59.99727 * 13 12 11 15 15 O 1.42901 * 109.47043 * 299.99957 * 13 12 11 16 16 C 1.53001 * 109.47374 * 179.97438 * 13 12 11 17 17 C 1.50693 * 109.47605 * 184.99790 * 16 13 12 18 18 C 1.38263 * 119.99161 * 89.99509 * 17 16 13 19 19 C 1.38227 * 120.02488 * 179.72424 * 18 17 16 20 20 C 1.38234 * 120.01430 * 0.28273 * 19 18 17 21 21 C 1.38334 * 119.98337 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.00894 * 179.97438 * 21 20 19 23 23 C 1.38190 * 119.99673 * 270.27943 * 17 16 13 24 24 H 0.96995 * 119.99839 * 359.97438 * 1 2 3 25 25 H 0.97003 * 119.99869 * 0.02562 * 11 9 7 26 26 H 1.09003 * 109.47299 * 59.99847 * 12 11 9 27 27 H 1.08998 * 109.46750 * 299.99529 * 12 11 9 28 28 H 0.96708 * 114.00018 * 299.99654 * 15 13 12 29 29 H 1.08998 * 109.46818 * 64.99807 * 16 13 12 30 30 H 1.09001 * 109.47102 * 305.00256 * 16 13 12 31 31 H 1.08002 * 119.98986 * 0.02562 * 18 17 16 32 32 H 1.08002 * 119.98919 * 180.30242 * 19 18 17 33 33 H 1.07993 * 120.00600 * 179.97438 * 20 19 18 34 34 H 1.08002 * 120.00565 * 359.97438 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0463 -1.4000 5 1 1.4383 2.6526 0.7000 6 1 3.5384 1.4400 0.7000 7 6 2.0069 -1.2130 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2751 -2.4806 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0005 12 6 1.2163 -4.9165 -0.0011 13 6 2.2105 -6.0794 -0.0003 14 1 2.8365 -6.0217 0.8901 15 8 3.0329 -6.0037 -1.1665 16 6 1.4455 -7.4045 -0.0003 17 6 2.4199 -8.5472 0.1242 18 6 2.7760 -9.0187 1.3742 19 6 3.6654 -10.0706 1.4891 20 6 4.2038 -10.6479 0.3544 21 6 3.8520 -10.1731 -0.8964 22 17 4.5282 -10.8971 -2.3218 23 6 2.9619 -9.1198 -1.0107 24 1 -0.4849 0.8400 0.0004 25 1 2.9188 -3.6478 -0.0002 26 1 0.5899 -4.9740 -0.8913 27 1 0.5894 -4.9744 0.8887 28 1 2.5414 -6.0491 -1.9981 29 1 0.8881 -7.5022 -0.9319 30 1 0.7529 -7.4241 0.8412 31 1 2.3554 -8.5682 2.2611 32 1 3.9395 -10.4417 2.4657 33 1 4.8990 -11.4695 0.4443 34 1 2.6869 -8.7486 -1.9869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834801389.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -112.037064 kcal Electronic energy + Delta-G solvation = -18952.282297 eV Core-core repulsion = 15681.081110 eV Total energy + Delta-G solvation = -3271.201188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.59876 -39.55605 -38.26309 -37.35571 -34.94773 -34.26573 -33.77272 -31.66938 -30.58391 -28.56597 -26.49752 -23.60353 -23.24723 -22.17804 -21.58067 -19.28460 -18.06341 -17.49226 -17.27252 -17.07312 -16.31518 -16.14720 -15.97721 -15.81786 -14.96403 -14.84786 -14.60934 -14.31966 -14.09933 -13.96880 -13.25747 -13.07778 -12.87727 -12.68659 -12.61878 -12.46115 -12.43789 -12.18148 -12.01952 -11.92671 -11.74520 -11.08154 -10.93204 -9.91475 -9.77939 -9.56636 -9.46638 -8.29357 -6.85422 0.21631 0.34966 1.18073 1.40685 1.41997 1.57428 2.25167 2.47080 2.65124 3.07152 3.52755 3.60749 3.67003 3.90190 4.03217 4.11124 4.21565 4.25019 4.37388 4.42633 4.57836 4.79681 4.83128 4.86247 5.05869 5.15209 5.29539 5.32128 5.41195 5.59695 5.88107 5.89814 6.23457 6.28229 6.79147 6.86996 7.55015 8.49076 8.67289 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.034123 B = 0.002880 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.370235 B = 9720.118386 C = 9979.836189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.537 3.463 10 O -0.634 6.634 11 N -0.751 5.751 12 C 0.102 3.898 13 C 0.123 3.877 14 H 0.102 0.898 15 O -0.563 6.563 16 C -0.105 4.105 17 C -0.067 4.067 18 C -0.121 4.121 19 C -0.107 4.107 20 C -0.123 4.123 21 C -0.048 4.048 22 Cl -0.079 7.079 23 C -0.107 4.107 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.384 0.616 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.146 0.854 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.890 -20.821 0.815 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.173 1.173 7 C -0.612 4.612 8 H 0.103 0.897 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.405 5.405 12 C -0.023 4.023 13 C 0.064 3.936 14 H 0.120 0.880 15 O -0.370 6.370 16 C -0.143 4.143 17 C -0.068 4.068 18 C -0.139 4.139 19 C -0.125 4.125 20 C -0.142 4.142 21 C -0.075 4.075 22 Cl -0.050 7.050 23 C -0.125 4.125 24 H 0.085 0.915 25 H 0.229 0.771 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.162 0.838 32 H 0.174 0.826 33 H 0.163 0.837 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.372 -20.793 1.127 22.443 hybrid contribution -0.014 0.608 -0.669 0.904 sum 8.358 -20.185 0.458 21.852 Atomic orbital electron populations 1.70182 1.09484 1.28947 1.36543 1.26974 0.95547 1.04950 0.91193 0.85014 0.78748 0.75073 0.79421 1.18639 1.19681 1.17325 1.21443 0.94676 0.90296 1.54765 0.89729 1.18582 0.86797 0.84432 0.76076 1.90545 1.16136 1.88052 1.57395 1.45701 1.09349 1.04535 1.80928 1.21744 0.95142 0.85004 1.00403 1.21942 0.91227 0.90838 0.89607 0.87985 1.86563 1.37642 1.96369 1.16405 1.21233 0.96616 0.91010 1.05423 1.19727 0.97682 0.96377 0.92972 1.21492 0.97950 0.96924 0.97512 1.21411 0.96182 0.95689 0.99186 1.21305 1.01057 1.01319 0.90483 1.21086 0.99957 0.98054 0.88371 1.98363 1.84406 1.82640 1.39563 1.21027 0.96687 0.95029 0.99791 0.91549 0.77128 0.94086 0.93546 0.76729 0.89214 0.88249 0.83843 0.82578 0.83655 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.58 11.83 21.84 0.26 -50.32 16 2 C 0.03 1.59 5.50 85.31 0.47 2.06 16 3 Si 1.00 41.22 29.56 68.60 2.03 43.25 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.58 -33.01 9.54 24.83 0.24 -32.78 16 8 H 0.08 4.40 7.85 -2.91 -0.02 4.37 16 9 C 0.54 31.34 7.75 86.36 0.67 32.01 16 10 O -0.63 -42.50 15.02 -4.31 -0.06 -42.56 16 11 N -0.75 -33.60 5.44 -467.42 -2.54 -36.14 16 12 C 0.10 3.66 5.34 86.38 0.46 4.12 16 13 C 0.12 3.11 3.04 30.59 0.09 3.21 16 14 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 15 O -0.56 -14.64 12.57 -148.98 -1.87 -16.51 16 16 C -0.10 -2.03 5.03 29.85 0.15 -1.88 16 17 C -0.07 -1.29 4.97 -19.87 -0.10 -1.39 16 18 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 19 C -0.11 -1.58 10.05 22.27 0.22 -1.36 16 20 C -0.12 -2.04 9.83 22.29 0.22 -1.82 16 21 C -0.05 -0.95 6.32 22.32 0.14 -0.80 16 22 Cl -0.08 -1.50 28.96 -2.72 -0.08 -1.58 16 23 C -0.11 -2.14 9.17 22.29 0.20 -1.93 16 24 H 0.27 15.26 8.29 -92.71 -0.77 14.49 16 25 H 0.40 15.96 8.33 -92.71 -0.77 15.19 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.38 8.05 9.05 -74.05 -0.67 7.38 16 29 H 0.09 1.59 8.09 -2.39 -0.02 1.57 16 30 H 0.10 1.73 8.09 -2.39 -0.02 1.71 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 33 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 34 H 0.13 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -77.07 317.27 0.41 -76.67 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.30 Total: 29.56 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 2.99 Total: -2.37 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -2.29 Total: -86.46 kcal Atomic # 8 Polarization: -57.13 SS G_CDS: -1.94 Total: -59.07 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -77.07 0.41 -76.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834801389.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.372 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds