Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99687 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99884 * 3 2 1 5 5 H 1.48495 * 109.47289 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00076 * 3 2 1 7 7 C 1.37871 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99608 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00439 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47274 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99699 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00080 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99969 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47148 * 179.72251 * 14 13 11 16 16 C 1.38166 * 120.02218 * 259.72476 * 15 14 13 17 17 C 1.38337 * 120.04345 * 179.72419 * 16 15 14 18 18 Cl 1.73603 * 119.95988 * 180.27505 * 17 16 15 19 19 C 1.38390 * 120.08458 * 0.55178 * 17 16 15 20 20 C 1.38117 * 120.04456 * 359.72181 * 19 17 16 21 21 C 1.38702 * 120.02030 * 79.99932 * 15 14 13 22 22 O 1.35920 * 120.04485 * 0.02562 * 21 15 14 23 23 H 0.97000 * 119.99666 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46433 * 60.00330 * 9 7 2 25 25 H 1.08993 * 109.47343 * 300.00510 * 9 7 2 26 26 H 1.09004 * 109.47116 * 60.00752 * 10 9 7 27 27 H 1.08998 * 109.47794 * 300.00664 * 10 9 7 28 28 H 0.97005 * 120.00161 * 359.72088 * 13 11 10 29 29 H 1.09001 * 109.46512 * 299.72412 * 14 13 11 30 30 H 1.08998 * 109.47174 * 59.71534 * 14 13 11 31 31 H 1.08005 * 119.97624 * 359.97438 * 16 15 14 32 32 H 1.08009 * 119.97599 * 179.70478 * 19 17 16 33 33 H 1.07998 * 120.02476 * 179.97438 * 20 19 17 34 34 H 0.96695 * 113.99864 * 90.00213 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4919 -4.9672 -0.0025 12 8 0.2791 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0031 14 6 1.4334 -7.4031 -0.0043 15 6 2.4127 -8.5485 -0.0117 16 6 2.6952 -9.2088 -1.1920 17 6 3.5984 -10.2566 -1.2003 18 17 3.9571 -11.0802 -2.6858 19 6 4.2121 -10.6529 -0.0249 20 6 3.9280 -9.9989 1.1580 21 6 3.0267 -8.9441 1.1674 22 8 2.7455 -8.2996 2.3306 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5566 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8727 -3.6047 0.8878 27 1 2.8715 -3.6038 -0.8922 28 1 3.1359 -6.1343 -0.0072 29 1 0.8102 -7.4636 0.8880 30 1 0.8032 -7.4580 -0.8919 31 1 2.2136 -8.9041 -2.1094 32 1 4.9134 -11.4743 -0.0326 33 1 4.4068 -10.3087 2.0752 34 1 2.0037 -8.6793 2.8212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846477968.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -77.003324 kcal Electronic energy + Delta-G solvation = -18818.630926 eV Core-core repulsion = 15548.948915 eV Total energy + Delta-G solvation = -3269.682011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.49135 -38.92195 -37.50257 -36.37994 -34.77290 -33.41189 -31.81543 -30.82785 -29.95176 -26.85033 -25.09414 -23.15099 -22.13262 -21.30177 -19.66856 -18.74402 -17.17904 -16.69846 -16.64042 -15.81399 -15.53030 -15.40114 -14.91527 -14.44167 -14.37137 -13.64615 -13.52128 -13.23593 -12.96538 -12.67820 -12.48136 -12.13630 -11.88687 -11.58021 -11.35711 -11.13249 -10.88540 -10.83872 -10.59548 -9.91667 -9.66539 -9.58007 -9.14827 -9.03033 -8.82768 -8.75478 -8.28922 -5.93368 -3.97643 0.56937 0.72436 1.73265 2.94391 3.28859 3.36604 3.40974 3.42831 3.70442 3.84326 4.22566 4.35078 4.50227 4.66416 4.87656 5.04364 5.28566 5.39574 5.41403 5.51984 5.65094 5.74118 5.83536 5.99401 6.16735 6.27370 6.29506 6.70021 6.93336 7.26284 7.77086 7.89774 7.91140 8.10289 8.41851 8.80380 9.10835 9.65663 11.17587 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027830 B = 0.002875 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.867927 B = 9737.489219 C =10048.224213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.536 6.536 13 N -0.735 5.735 14 C 0.168 3.832 15 C -0.117 4.117 16 C -0.076 4.076 17 C -0.047 4.047 18 Cl -0.067 7.067 19 C -0.090 4.090 20 C -0.136 4.136 21 C 0.131 3.869 22 O -0.487 6.487 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.398 0.602 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.861 -25.615 0.469 27.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.412 6.412 13 N -0.390 5.390 14 C 0.044 3.956 15 C -0.118 4.118 16 C -0.096 4.096 17 C -0.074 4.074 18 Cl -0.038 7.038 19 C -0.109 4.109 20 C -0.155 4.155 21 C 0.085 3.915 22 O -0.298 6.298 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.097 0.903 28 H 0.232 0.768 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.276 -25.184 0.184 26.510 hybrid contribution 0.639 0.434 0.034 0.773 sum 8.914 -24.750 0.218 26.307 Atomic orbital electron populations 1.69994 1.06046 1.26661 1.50210 1.25025 0.94832 0.99207 0.95329 0.86647 0.79534 0.83168 0.78545 1.20260 1.21302 1.20251 1.21198 0.92913 0.91053 1.51388 0.92658 1.18889 0.93165 0.89339 0.98598 1.21865 1.00723 0.91815 1.02529 1.21575 0.88619 0.85516 0.74267 1.90666 1.14450 1.87584 1.48472 1.46176 1.10091 1.04747 1.77949 1.19903 0.92056 0.80641 1.02969 1.20308 0.99725 0.98945 0.92841 1.20961 0.96352 0.93789 0.98449 1.20904 1.00965 0.97454 0.88059 1.98385 1.93972 1.77971 1.33486 1.20971 0.99356 1.00107 0.90470 1.21408 0.99753 0.95479 0.98833 1.18421 0.95445 0.91474 0.86159 1.84880 1.55566 1.56659 1.32715 0.92918 0.95839 0.95817 0.90187 0.90275 0.76780 0.90721 0.90805 0.84119 0.84435 0.84219 0.74795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.84 16 11 C 0.51 9.98 7.83 -10.98 -0.09 9.90 16 12 O -0.54 -12.69 15.98 5.56 0.09 -12.60 16 13 N -0.74 -10.64 5.55 -61.47 -0.34 -10.99 16 14 C 0.17 2.06 5.46 -5.19 -0.03 2.03 16 15 C -0.12 -1.14 5.26 -104.48 -0.55 -1.69 16 16 C -0.08 -0.69 9.45 -39.57 -0.37 -1.07 16 17 C -0.05 -0.40 6.32 -39.49 -0.25 -0.65 16 18 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 19 C -0.09 -0.66 9.82 -39.57 -0.39 -1.04 16 20 C -0.14 -1.00 9.99 -39.44 -0.39 -1.40 16 21 C 0.13 1.16 6.68 -39.22 -0.26 0.90 16 22 O -0.49 -4.35 12.74 -19.49 -0.25 -4.59 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.27 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.40 4.99 8.46 -40.82 -0.35 4.64 16 29 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 30 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 31 H 0.14 1.19 8.03 -52.48 -0.42 0.77 16 32 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.39 1.84 9.06 45.56 0.41 2.25 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -35.12 318.71 -7.75 -42.87 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.25 Total: 1.49 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -3.02 Total: -8.83 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.40 Total: -37.95 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.16 Total: -17.19 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.12 -7.75 -42.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846477968.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.132 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds