Wall clock time and date at job start Tue Mar 31 2020 05:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99900 * 2 1 4 4 H 1.48504 * 109.47025 * 269.99190 * 3 2 1 5 5 H 1.48496 * 109.47352 * 29.99901 * 3 2 1 6 6 H 1.48511 * 109.46991 * 149.99803 * 3 2 1 7 7 C 1.37875 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.46708 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99893 * 180.02562 * 11 10 9 13 13 O 1.21507 * 119.99927 * 0.02562 * 12 11 10 14 14 O 1.34634 * 119.99829 * 179.72952 * 12 11 10 15 15 C 1.45201 * 116.99818 * 180.02562 * 14 12 11 16 16 C 1.50695 * 109.47187 * 179.97438 * 15 14 12 17 17 C 1.38268 * 119.99370 * 269.72086 * 16 15 14 18 18 C 1.38219 * 120.02900 * 179.76338 * 17 16 15 19 19 C 1.38235 * 120.01056 * 0.51848 * 18 17 16 20 20 C 1.38330 * 119.98679 * 359.73429 * 19 18 17 21 21 Cl 1.73607 * 120.01243 * 180.02562 * 20 19 18 22 22 C 1.38188 * 119.99636 * 90.00172 * 16 15 14 23 23 H 0.97000 * 120.00246 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46827 * 59.99505 * 9 7 2 25 25 H 1.08994 * 109.47143 * 299.99781 * 9 7 2 26 26 H 1.08998 * 109.46692 * 60.00339 * 10 9 7 27 27 H 1.08994 * 109.47584 * 300.00203 * 10 9 7 28 28 H 0.97005 * 120.00261 * 0.02562 * 11 10 9 29 29 H 1.09001 * 109.47012 * 299.99999 * 15 14 12 30 30 H 1.09001 * 109.47271 * 59.99730 * 15 14 12 31 31 H 1.07999 * 119.98242 * 0.02562 * 17 16 15 32 32 H 1.07999 * 119.99350 * 180.25363 * 18 17 16 33 33 H 1.08001 * 120.00741 * 179.76335 * 19 18 17 34 34 H 1.07999 * 120.00421 * 359.94958 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.1866 -6.0981 0.0018 13 8 3.4017 -6.0981 0.0023 14 8 1.5134 -7.2640 0.0079 15 6 2.3042 -8.4818 0.0087 16 6 1.3862 -9.6768 0.0164 17 6 0.9746 -10.2245 1.2174 18 6 0.1287 -11.3176 1.2254 19 6 -0.2977 -11.8706 0.0324 20 6 0.1179 -11.3263 -1.1695 21 17 -0.4178 -12.0198 -2.6682 22 6 0.9605 -10.2287 -1.1768 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5570 -0.8897 25 1 0.6240 -2.5568 0.8903 26 1 2.8718 -3.6043 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.5427 -4.9308 0.0011 29 1 2.9297 -8.5094 -0.8835 30 1 2.9363 -8.5039 0.8965 31 1 1.3108 -9.7954 2.1497 32 1 -0.1957 -11.7424 2.1638 33 1 -0.9556 -12.7271 0.0386 34 1 1.2851 -9.8031 -2.1149 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859104048.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:11 Heat of formation + Delta-G solvation = -96.317364 kcal Electronic energy + Delta-G solvation = -18414.457893 eV Core-core repulsion = 15143.938363 eV Total energy + Delta-G solvation = -3270.519530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.57967 -40.33701 -38.05139 -37.41631 -36.52308 -34.88997 -33.26211 -31.79327 -31.52734 -27.89584 -26.60130 -23.74198 -23.39881 -22.59613 -22.23340 -19.82986 -18.61103 -18.26645 -17.77814 -17.43862 -16.55278 -16.53027 -16.43464 -15.71765 -15.51922 -15.00571 -14.70009 -14.52562 -14.27514 -14.10202 -13.68923 -13.23960 -12.94732 -12.64692 -12.53653 -12.51928 -12.41608 -12.27026 -11.93329 -11.80432 -11.75160 -11.61325 -11.35882 -10.60485 -10.17050 -10.06816 -9.76928 -8.23220 -6.33793 -0.06354 0.16235 1.07888 1.27640 1.44358 1.44710 1.56136 1.71390 2.41593 2.58113 3.12157 3.25110 3.64235 3.74291 3.96354 4.12463 4.18061 4.28805 4.41161 4.45146 4.47357 4.66194 4.81736 4.84058 5.05697 5.15007 5.27451 5.32428 5.40160 5.45964 5.57256 5.73317 5.78244 6.14655 6.43217 6.79820 7.27556 7.35661 8.88842 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032378 B = 0.002460 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.581153 B =11377.662338 C =11649.420150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.021 3.979 10 C 0.158 3.842 11 N -0.696 5.696 12 C 0.646 3.354 13 O -0.607 6.607 14 O -0.366 6.366 15 C 0.124 3.876 16 C -0.096 4.096 17 C -0.093 4.093 18 C -0.105 4.105 19 C -0.100 4.100 20 C -0.051 4.051 21 Cl -0.071 7.071 22 C -0.097 4.097 23 H 0.266 0.734 24 H 0.010 0.990 25 H 0.011 0.989 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.414 0.586 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -25.892 1.006 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.791 3.209 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.081 0.919 9 C -0.016 4.016 10 C 0.036 3.964 11 N -0.355 5.355 12 C 0.399 3.601 13 O -0.499 6.499 14 O -0.280 6.280 15 C 0.050 3.950 16 C -0.096 4.096 17 C -0.111 4.111 18 C -0.123 4.123 19 C -0.118 4.118 20 C -0.078 4.078 21 Cl -0.042 7.042 22 C -0.115 4.115 23 H 0.075 0.925 24 H 0.028 0.972 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.250 0.750 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.165 0.835 32 H 0.184 0.816 33 H 0.173 0.827 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.872 -25.916 0.870 25.945 hybrid contribution -0.117 0.962 -0.386 1.043 sum -0.989 -24.954 0.484 24.979 Atomic orbital electron populations 1.70064 1.07609 1.28038 1.50987 1.25879 0.95774 1.03156 0.94428 0.85427 0.78651 0.78374 0.78490 1.19828 1.20684 1.18864 1.21446 0.93750 0.91599 1.51553 0.91857 1.19166 0.94302 0.91479 0.96692 1.21356 0.94772 0.79540 1.00778 1.44975 1.11268 1.02908 1.76315 1.18196 0.83913 0.81730 0.76247 1.90947 1.13584 1.87662 1.57752 1.86308 1.40993 1.13727 1.87019 1.21846 0.91365 0.77381 1.04368 1.19439 1.00456 0.95851 0.93876 1.21517 0.95964 0.95775 0.97803 1.21491 0.96426 0.95385 0.98973 1.21477 0.99467 1.00538 0.90339 1.21031 1.01090 0.97557 0.88095 1.98380 1.89159 1.83821 1.32873 1.21081 0.96566 0.94954 0.98939 0.92542 0.97164 0.97038 0.92532 0.92645 0.74976 0.90055 0.89181 0.83516 0.81587 0.82657 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.04 29.54 68.60 2.03 45.06 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.55 -29.83 9.11 25.60 0.23 -29.60 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.05 5.09 29.85 0.15 1.20 16 10 C 0.16 6.61 5.61 86.38 0.48 7.09 16 11 N -0.70 -24.98 5.56 -590.85 -3.29 -28.27 16 12 C 0.65 22.85 8.75 129.79 1.14 23.99 16 13 O -0.61 -24.71 16.13 19.82 0.32 -24.39 16 14 O -0.37 -10.71 10.25 -55.43 -0.57 -11.28 16 15 C 0.12 2.85 5.60 71.23 0.40 3.25 16 16 C -0.10 -1.84 5.52 -19.87 -0.11 -1.95 16 17 C -0.09 -1.40 9.70 22.27 0.22 -1.18 16 18 C -0.10 -1.22 10.05 22.26 0.22 -1.00 16 19 C -0.10 -1.31 9.83 22.29 0.22 -1.10 16 20 C -0.05 -0.88 6.32 22.32 0.14 -0.74 16 21 Cl -0.07 -1.21 28.96 -2.72 -0.08 -1.28 16 22 C -0.10 -1.84 9.49 22.29 0.21 -1.63 16 23 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.41 13.29 8.58 -92.70 -0.80 12.50 16 29 H 0.08 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.09 1.92 8.08 -2.39 -0.02 1.90 16 31 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 33 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -65.24 321.16 2.79 -62.45 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.32 Total: 12.29 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: 3.77 Total: -0.84 kcal Atomic # 7 Polarization: -79.01 SS G_CDS: -3.00 Total: -82.01 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.25 Total: -35.67 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.08 Total: -1.28 kcal Total: -65.24 2.79 -62.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859104048.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.869 kcal (2) G-P(sol) polarization free energy of solvation -65.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds