Wall clock time and date at job start Tue Mar 31 2020 05:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00194 * 2 1 4 4 C 1.53005 * 109.47299 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46691 * 64.99854 * 4 3 2 6 6 C 1.36611 * 120.00189 * 269.99782 * 5 4 3 7 7 H 1.07996 * 119.99895 * 129.05248 * 6 5 4 8 8 C 1.39218 * 119.99608 * 309.04993 * 6 5 4 9 9 N 1.31256 * 120.00501 * 354.07436 * 8 6 5 10 10 Si 1.86805 * 119.99578 * 174.07113 * 8 6 5 11 11 H 1.48497 * 109.47220 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47101 * 120.00397 * 10 8 6 13 13 H 1.48498 * 109.46991 * 240.00408 * 10 8 6 14 14 C 1.34777 * 120.00320 * 90.00283 * 5 4 3 15 15 O 1.21682 * 119.99729 * 3.99862 * 14 5 4 16 16 C 1.47036 * 120.00371 * 183.99728 * 14 5 4 17 17 C 1.36893 * 125.14744 * 172.94878 * 16 14 5 18 18 C 1.36519 * 114.77725 * 179.97438 * 17 16 14 19 19 C 1.37142 * 114.69819 * 359.97438 * 18 17 16 20 20 C 1.46145 * 125.17398 * 179.97438 * 19 18 17 21 21 O 1.21368 * 120.00111 * 0.02562 * 20 19 18 22 22 S 1.75826 * 125.14538 * 352.90358 * 16 14 5 23 23 H 1.09006 * 109.46614 * 60.00448 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47110 * 300.00156 * 1 2 3 26 26 H 1.08993 * 109.47582 * 59.99498 * 3 2 1 27 27 H 1.09001 * 109.47298 * 299.99252 * 3 2 1 28 28 H 1.09000 * 109.46924 * 305.00429 * 4 3 2 29 29 H 1.08997 * 109.47305 * 184.99412 * 4 3 2 30 30 H 0.96996 * 120.00320 * 184.99753 * 9 8 6 31 31 H 1.08007 * 122.61200 * 359.97438 * 17 16 14 32 32 H 1.07996 * 122.65859 * 179.72843 * 18 17 16 33 33 H 1.08003 * 119.99567 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.0975 -0.7944 -1.3342 7 1 3.6294 -1.3292 -2.1473 8 6 4.8241 -1.4889 -0.3710 9 7 5.4892 -0.8315 0.5500 10 14 4.8525 -3.3566 -0.3894 11 1 4.0281 -3.8532 -1.5202 12 1 6.2510 -3.8288 -0.5509 13 1 4.3003 -3.8726 0.8889 14 6 4.2633 1.3327 -2.3201 15 8 4.2263 2.5452 -2.2249 16 6 4.6210 0.7064 -3.6014 17 6 4.7970 1.3745 -4.7832 18 6 5.1276 0.5822 -5.8446 19 6 5.2297 -0.7539 -5.5525 20 6 5.5694 -1.8020 -6.5127 21 8 5.7873 -1.5157 -7.6718 22 16 4.8883 -1.0139 -3.8473 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6888 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0901 30 1 6.0533 -1.3113 1.1764 31 1 4.6833 2.4451 -4.8691 32 1 5.2917 0.9757 -6.8368 33 1 5.6265 -2.8313 -6.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868824844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:23 Heat of formation + Delta-G solvation = -76.040005 kcal Electronic energy + Delta-G solvation = -20134.588802 eV Core-core repulsion = 16866.992270 eV Total energy + Delta-G solvation = -3267.596532 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -38.97643 -38.64245 -37.16911 -36.20193 -34.87298 -31.99754 -30.25858 -28.83499 -26.06829 -25.73926 -24.78426 -22.52407 -21.59444 -19.98794 -18.70045 -17.74509 -16.58860 -16.18597 -15.75585 -15.48518 -15.09686 -14.77967 -14.55002 -14.27060 -14.10618 -13.93890 -13.54160 -13.14388 -12.50722 -12.18724 -12.00653 -11.71027 -11.64032 -11.39260 -11.23753 -11.13698 -11.10139 -10.51749 -10.34690 -10.09094 -9.61447 -9.23344 -9.10925 -8.84158 -8.14575 -7.90659 -7.59509 -6.69782 -4.52441 0.68272 2.26053 2.43429 2.69613 2.99741 3.07061 3.09888 3.38431 3.83243 4.17309 4.35314 4.49992 4.63980 4.75600 5.56579 5.62654 5.66603 5.73756 5.88026 5.90834 5.95941 5.99136 6.07907 6.13266 6.49119 6.56611 6.83032 6.91618 6.97652 7.13820 7.64295 7.68830 7.81701 7.98683 8.70102 9.15023 9.59843 10.30758 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.007206 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.984218 B = 3884.536137 C = 4744.405547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.118 3.882 5 N -0.419 5.419 6 C -0.328 4.328 7 H 0.097 0.903 8 C 0.069 3.931 9 N -0.839 5.839 10 Si 0.908 3.092 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.272 1.272 14 C 0.533 3.467 15 O -0.592 6.592 16 C -0.174 4.174 17 C -0.129 4.129 18 C -0.066 4.066 19 C -0.396 4.396 20 C 0.415 3.585 21 O -0.480 6.480 22 S 0.303 5.697 23 H 0.032 0.968 24 H 0.079 0.921 25 H 0.031 0.969 26 H 0.043 0.957 27 H 0.040 0.960 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.279 0.721 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -2.987 -1.240 5.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.005 4.005 5 N -0.136 5.136 6 C -0.463 4.463 7 H 0.114 0.886 8 C -0.144 4.144 9 N -0.472 5.472 10 Si 0.732 3.268 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.198 1.198 14 C 0.322 3.678 15 O -0.479 6.479 16 C -0.297 4.297 17 C -0.161 4.161 18 C -0.100 4.100 19 C -0.513 4.513 20 C 0.275 3.725 21 O -0.356 6.356 22 S 0.579 5.421 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.128 0.872 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.862 -3.773 -0.680 5.442 hybrid contribution -0.192 0.695 -0.637 0.962 sum -4.054 -3.078 -1.317 5.258 Atomic orbital electron populations 1.22658 0.83220 1.01871 0.98922 1.88127 1.17537 1.27539 1.95062 1.23029 0.96158 0.84531 0.98888 1.21513 0.89450 0.99380 0.90181 1.43064 1.55406 1.06054 1.09120 1.19251 1.33467 0.81495 1.12068 0.88623 1.25624 0.93394 1.00740 0.94596 1.69681 1.24144 1.37395 1.15956 0.86123 0.78973 0.81974 0.79726 1.17959 1.19736 1.19754 1.17531 0.80520 0.86183 0.83524 1.90663 1.58777 1.13568 1.84857 1.25094 1.08713 0.97582 0.98335 1.20294 1.03841 1.01172 0.90791 1.20384 0.98389 0.91759 0.99430 1.27039 1.18113 0.99574 1.06584 1.22933 0.70705 0.92705 0.86181 1.90493 1.37717 1.86529 1.20850 1.85312 1.57988 1.03857 0.94949 0.94930 0.90295 0.95081 0.93878 0.94125 0.87200 0.90437 0.91030 0.84111 0.85096 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 101.05 1.11 1.56 16 2 O -0.36 -7.13 10.17 -35.23 -0.36 -7.49 16 3 C 0.05 0.99 6.28 37.16 0.23 1.22 16 4 C 0.12 2.60 5.43 -4.04 -0.02 2.58 16 5 N -0.42 -9.90 2.40 -116.19 -0.28 -10.17 16 6 C -0.33 -7.52 6.26 -15.06 -0.09 -7.61 16 7 H 0.10 2.14 5.42 -32.53 -0.18 1.96 16 8 C 0.07 1.56 5.21 -17.43 -0.09 1.47 16 9 N -0.84 -20.07 11.55 55.51 0.64 -19.42 16 10 Si 0.91 17.51 29.56 -169.99 -5.03 12.49 16 11 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 12 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 13 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 14 C 0.53 12.84 7.61 -12.69 -0.10 12.74 16 15 O -0.59 -15.32 16.39 5.20 0.09 -15.23 16 16 C -0.17 -3.72 6.31 -36.50 -0.23 -3.95 16 17 C -0.13 -2.50 9.88 -40.69 -0.40 -2.90 16 18 C -0.07 -1.18 9.88 -40.60 -0.40 -1.58 16 19 C -0.40 -6.84 6.44 -36.81 -0.24 -7.07 16 20 C 0.41 6.39 11.70 33.90 0.40 6.78 16 21 O -0.48 -8.70 17.63 5.48 0.10 -8.61 16 22 S 0.30 5.62 18.54 -107.50 -1.99 3.63 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 2.56 5.99 -51.93 -0.31 2.25 16 29 H 0.08 1.72 7.37 -51.93 -0.38 1.34 16 30 H 0.28 6.24 8.31 -40.82 -0.34 5.90 16 31 H 0.14 2.62 8.05 -52.48 -0.42 2.20 16 32 H 0.13 2.14 8.03 -52.49 -0.42 1.72 16 33 H 0.10 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 305.53 15.07 4.60 4.60 Total: -1.00 -28.18 305.53 -5.45 -33.62 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -3.39 Total: 3.34 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 0.17 Total: 3.25 kcal Atomic # 7 Polarization: -29.96 SS G_CDS: 0.36 Total: -29.60 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.18 Total: -31.33 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: 5.62 SS G_CDS: -1.99 Total: 3.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.18 -5.45 -33.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868824844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.418 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds