Wall clock time and date at job start Tue Mar 31 2020 05:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 114.00194 * 2 1 4 4 C 1.53005 * 109.47299 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46691 * 64.99854 * 4 3 2 6 6 C 1.36611 * 120.00189 * 269.99782 * 5 4 3 7 7 H 1.07996 * 119.99895 * 129.05248 * 6 5 4 8 8 C 1.39218 * 119.99608 * 309.04993 * 6 5 4 9 9 N 1.31256 * 120.00501 * 354.07436 * 8 6 5 10 10 Si 1.86805 * 119.99578 * 174.07113 * 8 6 5 11 11 H 1.48497 * 109.47220 * 359.97438 * 10 8 6 12 12 H 1.48490 * 109.47101 * 120.00397 * 10 8 6 13 13 H 1.48498 * 109.46991 * 240.00408 * 10 8 6 14 14 C 1.34777 * 120.00320 * 90.00283 * 5 4 3 15 15 O 1.21682 * 119.99729 * 3.99862 * 14 5 4 16 16 C 1.47036 * 120.00371 * 183.99728 * 14 5 4 17 17 C 1.36893 * 125.14744 * 172.94878 * 16 14 5 18 18 C 1.36519 * 114.77725 * 179.97438 * 17 16 14 19 19 C 1.37142 * 114.69819 * 359.97438 * 18 17 16 20 20 C 1.46145 * 125.17398 * 179.97438 * 19 18 17 21 21 O 1.21368 * 120.00111 * 0.02562 * 20 19 18 22 22 S 1.75826 * 125.14538 * 352.90358 * 16 14 5 23 23 H 1.09006 * 109.46614 * 60.00448 * 1 2 3 24 24 H 1.09003 * 109.47402 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47110 * 300.00156 * 1 2 3 26 26 H 1.08993 * 109.47582 * 59.99498 * 3 2 1 27 27 H 1.09001 * 109.47298 * 299.99252 * 3 2 1 28 28 H 1.09000 * 109.46924 * 305.00429 * 4 3 2 29 29 H 1.08997 * 109.47305 * 184.99412 * 4 3 2 30 30 H 0.96996 * 120.00320 * 184.99753 * 9 8 6 31 31 H 1.08007 * 122.61200 * 359.97438 * 17 16 14 32 32 H 1.07996 * 122.65859 * 179.72843 * 18 17 16 33 33 H 1.08003 * 119.99567 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5638 -1.2509 6 6 4.0975 -0.7944 -1.3342 7 1 3.6294 -1.3292 -2.1473 8 6 4.8241 -1.4889 -0.3710 9 7 5.4892 -0.8315 0.5500 10 14 4.8525 -3.3566 -0.3894 11 1 4.0281 -3.8532 -1.5202 12 1 6.2510 -3.8288 -0.5509 13 1 4.3003 -3.8726 0.8889 14 6 4.2633 1.3327 -2.3201 15 8 4.2263 2.5452 -2.2249 16 6 4.6210 0.7064 -3.6014 17 6 4.7970 1.3745 -4.7832 18 6 5.1276 0.5822 -5.8446 19 6 5.2297 -0.7539 -5.5525 20 6 5.5694 -1.8020 -6.5127 21 8 5.7873 -1.5157 -7.6718 22 16 4.8883 -1.0139 -3.8473 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 0.8899 27 1 1.6888 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1764 0.0901 30 1 6.0533 -1.3113 1.1764 31 1 4.6833 2.4451 -4.8691 32 1 5.2917 0.9757 -6.8368 33 1 5.6265 -2.8313 -6.1907 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868824844.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:21 Heat of formation + Delta-G solvation = -93.603167 kcal Electronic energy + Delta-G solvation = -20135.350397 eV Core-core repulsion = 16866.992270 eV Total energy + Delta-G solvation = -3268.358128 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.69814 -40.02024 -38.65000 -37.70128 -36.63700 -33.73566 -31.84246 -30.33704 -27.39293 -27.36303 -26.33020 -24.06208 -23.03738 -21.68150 -20.34180 -19.21373 -18.21299 -17.66643 -17.32441 -16.96426 -16.63416 -16.29591 -16.06580 -15.78890 -15.59741 -15.34494 -15.07164 -14.73695 -14.04017 -13.66217 -13.58128 -13.29717 -13.18951 -12.95609 -12.81859 -12.70663 -12.54328 -11.99411 -11.86932 -11.63120 -11.01105 -10.89118 -10.62381 -10.49743 -9.73782 -9.42237 -9.27436 -8.40216 -6.30442 -0.78841 0.74509 1.00341 1.20494 1.48759 1.51631 1.62952 1.97683 2.23857 2.45232 2.77085 2.95882 3.11147 3.45605 4.11894 4.24192 4.40053 4.41359 4.45147 4.50967 4.55599 4.59697 4.60666 4.77515 4.87138 5.08671 5.23224 5.31355 5.38647 5.45272 5.94737 6.24485 6.39639 6.44324 6.96014 7.37386 7.83489 8.62179 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.015457 B = 0.007206 C = 0.005900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.984218 B = 3884.536137 C = 4744.405547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.394 6.394 3 C 0.064 3.936 4 C 0.116 3.884 5 N -0.425 5.425 6 C -0.341 4.341 7 H 0.103 0.897 8 C 0.034 3.966 9 N -0.875 5.875 10 Si 0.957 3.043 11 H -0.237 1.237 12 H -0.266 1.266 13 H -0.277 1.277 14 C 0.519 3.481 15 O -0.627 6.627 16 C -0.222 4.222 17 C -0.118 4.118 18 C -0.078 4.078 19 C -0.378 4.378 20 C 0.423 3.577 21 O -0.502 6.502 22 S 0.331 5.669 23 H 0.037 0.963 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.281 0.719 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.556 -5.217 -2.495 7.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.313 6.313 3 C -0.014 4.014 4 C -0.008 4.008 5 N -0.142 5.142 6 C -0.474 4.474 7 H 0.120 0.880 8 C -0.175 4.175 9 N -0.508 5.508 10 Si 0.778 3.222 11 H -0.159 1.159 12 H -0.190 1.190 13 H -0.203 1.203 14 C 0.309 3.691 15 O -0.517 6.517 16 C -0.344 4.344 17 C -0.151 4.151 18 C -0.110 4.110 19 C -0.496 4.496 20 C 0.284 3.716 21 O -0.379 6.379 22 S 0.607 5.393 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.048 0.952 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.315 -6.021 -1.909 7.650 hybrid contribution -0.073 1.396 -0.358 1.443 sum -4.388 -4.626 -2.267 6.767 Atomic orbital electron populations 1.22893 0.80612 1.03472 1.00169 1.88061 1.20414 1.27477 1.95306 1.22811 0.94082 0.84876 0.99641 1.21476 0.91681 0.98126 0.89484 1.43262 1.55085 1.06569 1.09251 1.19476 1.33958 0.81195 1.12821 0.88018 1.26346 0.92750 1.04440 0.93942 1.69780 1.25205 1.38988 1.16871 0.85378 0.79492 0.77248 0.80046 1.15925 1.19027 1.20264 1.17970 0.80365 0.86040 0.84693 1.90608 1.60464 1.14889 1.85706 1.24992 1.11892 0.99728 0.97799 1.20431 1.02537 1.01458 0.90690 1.20527 0.98827 0.92002 0.99677 1.27372 1.15868 1.00166 1.06199 1.23590 0.69066 0.93919 0.85001 1.90510 1.38510 1.87004 1.21850 1.84925 1.57483 1.01669 0.95232 0.94420 0.88577 0.93020 0.91111 0.95173 0.88678 0.91837 0.90907 0.84190 0.83404 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 11.01 113.37 1.25 1.93 16 2 O -0.39 -15.22 10.17 -148.98 -1.52 -16.73 16 3 C 0.06 2.45 6.28 71.98 0.45 2.91 16 4 C 0.12 5.29 5.43 86.38 0.47 5.76 16 5 N -0.43 -20.61 2.40 -639.73 -1.54 -22.14 16 6 C -0.34 -15.66 6.26 84.18 0.53 -15.13 16 7 H 0.10 4.45 5.42 -15.61 -0.08 4.37 16 8 C 0.03 1.53 5.21 85.01 0.44 1.97 16 9 N -0.87 -42.59 11.55 21.71 0.25 -42.34 16 10 Si 0.96 34.57 29.56 68.60 2.03 36.60 16 11 H -0.24 -7.73 7.11 99.48 0.71 -7.02 16 12 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 13 H -0.28 -10.18 7.11 99.48 0.71 -9.48 16 14 C 0.52 25.78 7.61 86.55 0.66 26.44 16 15 O -0.63 -33.89 16.39 -4.29 -0.07 -33.96 16 16 C -0.22 -9.50 6.31 24.26 0.15 -9.35 16 17 C -0.12 -4.52 9.88 21.55 0.21 -4.31 16 18 C -0.08 -2.61 9.88 21.61 0.21 -2.40 16 19 C -0.38 -11.91 6.44 24.07 0.15 -11.76 16 20 C 0.42 11.19 11.70 69.87 0.82 12.01 16 21 O -0.50 -16.37 17.63 -3.30 -0.06 -16.43 16 22 S 0.33 11.66 18.54 -56.49 -1.05 10.62 16 23 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 24 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 27 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 4.61 5.99 -2.39 -0.01 4.60 16 29 H 0.06 2.99 7.37 -2.39 -0.02 2.97 16 30 H 0.28 12.78 8.31 -92.71 -0.77 12.01 16 31 H 0.14 5.28 8.05 -2.91 -0.02 5.25 16 32 H 0.15 4.48 8.03 -2.91 -0.02 4.46 16 33 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -61.75 305.53 4.47 -57.28 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 1.07 Total: 19.04 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 5.35 Total: 8.08 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -1.28 Total: -64.48 kcal Atomic # 8 Polarization: -65.49 SS G_CDS: -1.64 Total: -67.13 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 11.66 SS G_CDS: -1.05 Total: 10.62 kcal Total: -61.75 4.47 -57.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868824844.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.320 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds