Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 115.54692 * 2 1 4 4 C 1.52993 * 117.50097 * 145.67127 * 2 1 3 5 5 H 1.08998 * 117.50372 * 214.98185 * 4 2 1 6 6 C 1.53003 * 117.50041 * 0.02562 * 4 2 1 7 7 S 1.81398 * 109.47439 * 184.99835 * 6 4 2 8 8 O 1.42102 * 110.54238 * 291.62867 * 7 6 4 9 9 O 1.42099 * 110.54193 * 68.37565 * 7 6 4 10 10 N 1.65596 * 104.44923 * 179.97438 * 7 6 4 11 11 C 1.46500 * 119.99984 * 65.00141 * 10 7 6 12 12 C 1.50703 * 109.47166 * 164.99778 * 11 10 7 13 13 H 1.08006 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00422 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00488 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99695 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46992 * 90.00142 * 16 14 12 18 18 H 1.48495 * 109.47117 * 210.00192 * 16 14 12 19 19 H 1.48506 * 109.46857 * 330.00280 * 16 14 12 20 20 C 1.53000 * 117.49988 * 214.33680 * 2 1 3 21 21 F 1.39902 * 117.49697 * 359.97438 * 20 2 1 22 22 F 1.39894 * 117.49922 * 145.01792 * 20 2 1 23 23 H 1.08997 * 109.46958 * 34.41637 * 1 2 3 24 24 H 1.08998 * 109.47045 * 154.41568 * 1 2 3 25 25 H 1.09000 * 109.47000 * 274.41518 * 1 2 3 26 26 H 1.08997 * 109.46702 * 85.58515 * 3 2 1 27 27 H 1.09001 * 109.47031 * 205.58476 * 3 2 1 28 28 H 1.08999 * 109.47068 * 325.58495 * 3 2 1 29 29 H 1.09005 * 109.47001 * 305.00267 * 6 4 2 30 30 H 1.09001 * 109.47076 * 64.99837 * 6 4 2 31 31 H 0.97003 * 119.99947 * 244.99507 * 10 7 6 32 32 H 1.08996 * 109.46942 * 284.99894 * 11 10 7 33 33 H 1.08996 * 109.47326 * 45.00347 * 11 10 7 34 34 H 0.96999 * 120.00378 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3805 0.0000 4 6 2.2365 -1.1207 0.7653 5 1 3.1716 -0.8747 1.2685 6 6 1.3590 -2.1561 1.4716 7 16 2.4077 -3.2881 2.4252 8 8 3.1834 -4.1012 1.5555 9 8 3.0057 -2.6097 3.5213 10 7 1.3431 -4.3426 3.1301 11 6 0.5454 -5.2450 2.2961 12 6 -0.0501 -6.3294 3.1566 13 1 0.1457 -6.3446 4.2187 14 6 -0.8449 -7.3022 2.5883 15 7 -1.3650 -8.2482 3.3393 16 14 -1.1841 -7.2755 0.7514 17 1 -0.1430 -8.0638 0.0444 18 1 -2.5194 -7.8685 0.4860 19 1 -1.1595 -5.8730 0.2639 20 6 2.2365 -1.1206 -0.7655 21 9 1.4340 -2.0672 -1.4114 22 9 3.4366 -0.8048 -1.4113 23 1 -0.3633 0.8478 -0.5808 24 1 -0.3633 -0.9269 -0.4438 25 1 -0.3633 0.0791 1.0246 26 1 2.2752 1.7423 1.0246 27 1 3.1829 1.3085 -0.4438 28 1 1.5817 2.0739 -0.5808 29 1 0.6673 -1.6482 2.1438 30 1 0.7952 -2.7213 0.7295 31 1 1.2478 -4.3629 4.0952 32 1 -0.2546 -4.6827 1.8147 33 1 1.1827 -5.6945 1.5346 34 1 -1.9244 -8.9323 2.9395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882135901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = -149.337193 kcal Electronic energy + Delta-G solvation = -21048.146167 eV Core-core repulsion = 17358.974795 eV Total energy + Delta-G solvation = -3689.171372 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.88521 -47.54664 -38.43394 -36.79397 -35.64648 -34.83190 -32.25732 -31.26622 -28.29184 -27.46618 -27.40677 -22.10929 -21.91572 -19.89417 -19.03005 -17.93758 -17.68771 -16.90600 -16.49024 -16.19705 -15.94584 -15.76801 -14.74684 -14.45429 -14.20233 -13.96331 -13.75691 -13.63526 -13.45790 -13.15241 -12.99764 -12.82012 -12.66094 -12.54265 -12.40347 -12.08595 -11.80748 -11.67635 -11.63668 -11.20443 -10.93625 -10.67581 -10.30764 -10.03050 -9.92716 -9.57480 -8.93397 -8.55545 -6.23168 -4.25122 0.51079 2.65676 2.69937 3.11414 3.21652 3.27571 3.30528 3.71019 3.82373 4.12621 4.27488 4.28729 4.43989 4.49993 4.56411 4.90556 5.09623 5.14597 5.15244 5.24655 5.40079 5.43818 5.45078 5.62971 5.69231 5.87607 6.08245 6.74463 6.84975 7.34361 7.76703 8.32400 8.78421 9.34475 10.89166 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.005556 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.736399 B = 5038.162113 C = 5628.028319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C -0.126 4.126 4 C -0.139 4.139 5 H 0.139 0.861 6 C -0.618 4.618 7 S 2.613 3.387 8 O -0.952 6.952 9 O -0.968 6.968 10 N -1.096 6.096 11 C 0.213 3.787 12 C -0.532 4.532 13 H 0.083 0.917 14 C 0.076 3.924 15 N -0.891 5.891 16 Si 0.872 3.128 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.264 1.264 20 C 0.205 3.795 21 F -0.150 7.150 22 F -0.155 7.155 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.149 0.851 30 H 0.143 0.857 31 H 0.416 0.584 32 H 0.019 0.981 33 H 0.033 0.967 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 19.129 -7.125 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 C -0.183 4.183 4 C -0.160 4.160 5 H 0.157 0.843 6 C -0.744 4.744 7 S 2.702 3.298 8 O -0.942 6.942 9 O -0.958 6.958 10 N -0.858 5.858 11 C 0.088 3.912 12 C -0.571 4.571 13 H 0.101 0.899 14 C -0.128 4.128 15 N -0.528 5.528 16 Si 0.698 3.302 17 H -0.195 1.195 18 H -0.207 1.207 19 H -0.188 1.188 20 C 0.168 3.832 21 F -0.131 7.131 22 F -0.135 7.135 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.251 0.749 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.230 18.925 -7.302 20.721 hybrid contribution -0.924 -0.179 -0.979 1.359 sum 3.305 18.746 -8.281 20.759 Atomic orbital electron populations 1.21450 0.89573 1.03682 1.03572 1.23010 0.97470 0.92275 0.97667 1.21468 1.01028 0.92198 1.03567 1.23321 1.01905 0.99064 0.91687 0.84339 1.30414 1.15380 1.13346 1.15267 1.04798 0.75131 0.74969 0.74858 1.93605 1.66601 1.64867 1.69097 1.93565 1.74971 1.76478 1.50832 1.55281 1.61344 1.51136 1.17995 1.19505 0.90183 0.89837 0.91660 1.21026 1.30685 1.08950 0.96446 0.89909 1.24859 0.94974 0.94833 0.98171 1.69870 1.32915 1.14215 1.35834 0.86914 0.78353 0.79246 0.85663 1.19537 1.20749 1.18809 1.20263 0.81096 0.94071 0.87743 1.93017 1.71895 1.65170 1.82988 1.93009 1.44838 1.92444 1.83247 0.90895 0.90880 0.90342 0.90370 0.91055 0.90769 0.83280 0.83891 0.74862 0.96375 0.94925 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 8.83 37.16 0.33 -0.72 16 2 C -0.10 -0.98 2.70 -154.51 -0.42 -1.40 16 3 C -0.13 -0.90 9.82 37.16 0.36 -0.54 16 4 C -0.14 -1.62 5.46 -90.58 -0.49 -2.11 16 5 H 0.14 1.41 8.06 -51.93 -0.42 0.99 16 6 C -0.62 -7.70 5.42 37.16 0.20 -7.50 16 7 S 2.61 43.26 5.40 -107.50 -0.58 42.68 16 8 O -0.95 -19.35 17.50 -57.54 -1.01 -20.35 16 9 O -0.97 -17.18 18.08 -57.54 -1.04 -18.22 16 10 N -1.10 -20.54 5.88 -11.66 -0.07 -20.60 16 11 C 0.21 4.76 4.95 -5.19 -0.03 4.74 16 12 C -0.53 -14.26 9.83 -34.44 -0.34 -14.60 16 13 H 0.08 2.36 7.90 -52.48 -0.41 1.94 16 14 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 15 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 16 Si 0.87 20.41 27.47 -169.99 -4.67 15.74 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 20 C 0.21 2.60 5.08 -26.69 -0.14 2.46 16 21 F -0.15 -2.16 15.37 2.25 0.03 -2.13 16 22 F -0.16 -2.03 16.50 2.25 0.04 -1.99 16 23 H 0.07 0.48 7.93 -51.93 -0.41 0.07 16 24 H 0.07 0.69 7.10 -51.93 -0.37 0.32 16 25 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.53 7.10 -51.93 -0.37 0.16 16 28 H 0.07 0.43 7.93 -51.93 -0.41 0.01 16 29 H 0.15 1.42 7.77 -51.92 -0.40 1.01 16 30 H 0.14 1.82 7.06 -51.92 -0.37 1.45 16 31 H 0.42 7.39 8.50 -34.47 -0.29 7.09 16 32 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 33 H 0.03 0.76 7.12 -51.93 -0.37 0.39 16 34 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 306.41 15.07 4.62 4.62 Total: -1.00 -33.30 306.41 -6.71 -40.01 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.20 Total: 3.27 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -0.61 Total: -17.68 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.71 Total: -45.96 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -2.05 Total: -38.58 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.07 Total: -4.12 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 43.26 SS G_CDS: -0.58 Total: 42.68 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.30 -6.71 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882135901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.324 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds