Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 115.54692 * 2 1 4 4 C 1.52993 * 117.50097 * 145.67127 * 2 1 3 5 5 H 1.08998 * 117.50372 * 214.98185 * 4 2 1 6 6 C 1.53003 * 117.50041 * 0.02562 * 4 2 1 7 7 S 1.81398 * 109.47439 * 184.99835 * 6 4 2 8 8 O 1.42102 * 110.54238 * 291.62867 * 7 6 4 9 9 O 1.42099 * 110.54193 * 68.37565 * 7 6 4 10 10 N 1.65596 * 104.44923 * 179.97438 * 7 6 4 11 11 C 1.46500 * 119.99984 * 65.00141 * 10 7 6 12 12 C 1.50703 * 109.47166 * 164.99778 * 11 10 7 13 13 H 1.08006 * 119.99838 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00422 * 180.02562 * 12 11 10 15 15 N 1.31511 * 120.00488 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99695 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.46992 * 90.00142 * 16 14 12 18 18 H 1.48495 * 109.47117 * 210.00192 * 16 14 12 19 19 H 1.48506 * 109.46857 * 330.00280 * 16 14 12 20 20 C 1.53000 * 117.49988 * 214.33680 * 2 1 3 21 21 F 1.39902 * 117.49697 * 359.97438 * 20 2 1 22 22 F 1.39894 * 117.49922 * 145.01792 * 20 2 1 23 23 H 1.08997 * 109.46958 * 34.41637 * 1 2 3 24 24 H 1.08998 * 109.47045 * 154.41568 * 1 2 3 25 25 H 1.09000 * 109.47000 * 274.41518 * 1 2 3 26 26 H 1.08997 * 109.46702 * 85.58515 * 3 2 1 27 27 H 1.09001 * 109.47031 * 205.58476 * 3 2 1 28 28 H 1.08999 * 109.47068 * 325.58495 * 3 2 1 29 29 H 1.09005 * 109.47001 * 305.00267 * 6 4 2 30 30 H 1.09001 * 109.47076 * 64.99837 * 6 4 2 31 31 H 0.97003 * 119.99947 * 244.99507 * 10 7 6 32 32 H 1.08996 * 109.46942 * 284.99894 * 11 10 7 33 33 H 1.08996 * 109.47326 * 45.00347 * 11 10 7 34 34 H 0.96999 * 120.00378 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3805 0.0000 4 6 2.2365 -1.1207 0.7653 5 1 3.1716 -0.8747 1.2685 6 6 1.3590 -2.1561 1.4716 7 16 2.4077 -3.2881 2.4252 8 8 3.1834 -4.1012 1.5555 9 8 3.0057 -2.6097 3.5213 10 7 1.3431 -4.3426 3.1301 11 6 0.5454 -5.2450 2.2961 12 6 -0.0501 -6.3294 3.1566 13 1 0.1457 -6.3446 4.2187 14 6 -0.8449 -7.3022 2.5883 15 7 -1.3650 -8.2482 3.3393 16 14 -1.1841 -7.2755 0.7514 17 1 -0.1430 -8.0638 0.0444 18 1 -2.5194 -7.8685 0.4860 19 1 -1.1595 -5.8730 0.2639 20 6 2.2365 -1.1206 -0.7655 21 9 1.4340 -2.0672 -1.4114 22 9 3.4366 -0.8048 -1.4113 23 1 -0.3633 0.8478 -0.5808 24 1 -0.3633 -0.9269 -0.4438 25 1 -0.3633 0.0791 1.0246 26 1 2.2752 1.7423 1.0246 27 1 3.1829 1.3085 -0.4438 28 1 1.5817 2.0739 -0.5808 29 1 0.6673 -1.6482 2.1438 30 1 0.7952 -2.7213 0.7295 31 1 1.2478 -4.3629 4.0952 32 1 -0.2546 -4.6827 1.8147 33 1 1.1827 -5.6945 1.5346 34 1 -1.9244 -8.9323 2.9395 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882135901.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = -174.540825 kcal Electronic energy + Delta-G solvation = -21049.239078 eV Core-core repulsion = 17358.974795 eV Total energy + Delta-G solvation = -3690.264283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.83515 -48.51614 -39.24490 -38.22401 -37.08485 -36.53373 -34.24835 -32.10928 -29.34712 -29.00657 -28.13989 -24.01036 -22.87612 -20.81775 -20.31512 -19.40536 -18.82649 -18.14185 -17.76632 -17.51032 -17.17118 -17.05905 -16.36474 -15.42221 -15.22783 -15.16681 -14.90216 -14.76014 -14.63484 -14.49058 -14.30317 -14.01016 -13.75390 -13.47212 -13.31633 -13.25680 -13.14438 -13.04186 -12.76104 -12.46329 -12.28917 -12.21976 -11.85777 -11.63332 -11.24650 -10.90485 -10.77977 -10.22697 -8.33732 -6.40720 -0.80042 1.36946 1.40735 1.47836 1.75578 1.81428 1.85641 2.32191 2.62927 2.98160 3.01177 3.07576 3.21349 3.44582 3.60766 3.85395 3.99394 4.17669 4.35475 4.39499 4.67347 4.74265 4.84214 4.88561 4.92369 5.00864 5.05244 5.19582 5.31157 5.41298 6.18834 6.24258 6.66140 7.22972 8.82028 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020957 B = 0.005556 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.736399 B = 5038.162113 C = 5628.028319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.129 4.129 4 C -0.157 4.157 5 H 0.150 0.850 6 C -0.592 4.592 7 S 2.619 3.381 8 O -0.997 6.997 9 O -0.982 6.982 10 N -1.103 6.103 11 C 0.217 3.783 12 C -0.541 4.541 13 H 0.048 0.952 14 C 0.017 3.983 15 N -0.940 5.940 16 Si 0.931 3.069 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.231 1.231 20 C 0.171 3.829 21 F -0.165 7.165 22 F -0.164 7.164 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.188 0.812 30 H 0.148 0.852 31 H 0.418 0.582 32 H 0.048 0.952 33 H 0.025 0.975 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 21.991 -8.541 23.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.070 4.070 3 C -0.186 4.186 4 C -0.178 4.178 5 H 0.167 0.833 6 C -0.723 4.723 7 S 2.714 3.286 8 O -0.987 6.987 9 O -0.973 6.973 10 N -0.863 5.863 11 C 0.091 3.909 12 C -0.580 4.580 13 H 0.067 0.933 14 C -0.182 4.182 15 N -0.579 5.579 16 Si 0.754 3.246 17 H -0.198 1.198 18 H -0.201 1.201 19 H -0.154 1.154 20 C 0.134 3.866 21 F -0.146 7.146 22 F -0.144 7.144 23 H 0.112 0.888 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.205 0.795 30 H 0.166 0.834 31 H 0.253 0.747 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.362 21.771 -8.678 23.677 hybrid contribution -0.589 -0.996 -0.476 1.251 sum 2.773 20.775 -9.154 22.871 Atomic orbital electron populations 1.21612 0.88270 1.04119 1.05025 1.23204 0.98279 0.92166 0.93398 1.21600 1.00931 0.90983 1.05048 1.23541 1.02938 1.00215 0.91069 0.83271 1.30125 1.14641 1.12394 1.15111 1.04446 0.74896 0.74851 0.74383 1.93549 1.68542 1.66925 1.69689 1.93543 1.75592 1.76289 1.51870 1.55191 1.61036 1.52031 1.18054 1.19324 0.90893 0.89567 0.91123 1.21350 1.30563 1.10438 0.95696 0.93338 1.25780 0.94834 0.94364 1.03258 1.70014 1.34291 1.15410 1.38203 0.85957 0.78150 0.81064 0.79471 1.19755 1.20145 1.15365 1.20809 0.81630 0.96113 0.88029 1.92975 1.72226 1.66055 1.83329 1.92982 1.45479 1.92531 1.83450 0.88801 0.91998 0.88577 0.88629 0.91585 0.88810 0.79473 0.83399 0.74721 0.93466 0.95684 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 8.83 71.98 0.64 -1.00 16 2 C -0.07 -1.06 2.70 -52.18 -0.14 -1.20 16 3 C -0.13 -1.34 9.82 71.98 0.71 -0.64 16 4 C -0.16 -3.21 5.46 -10.77 -0.06 -3.27 16 5 H 0.15 2.69 8.06 -2.39 -0.02 2.67 16 6 C -0.59 -12.88 5.42 71.98 0.39 -12.49 16 7 S 2.62 83.78 5.40 -56.49 -0.31 83.47 16 8 O -1.00 -40.49 17.50 -127.65 -2.23 -42.73 16 9 O -0.98 -33.82 18.08 -127.65 -2.31 -36.13 16 10 N -1.10 -40.64 5.88 -190.79 -1.12 -41.77 16 11 C 0.22 9.46 4.95 85.63 0.42 9.88 16 12 C -0.54 -29.40 9.83 25.60 0.25 -29.15 16 13 H 0.05 2.88 7.90 -2.91 -0.02 2.85 16 14 C 0.02 0.94 5.47 84.65 0.46 1.41 16 15 N -0.94 -56.37 13.96 21.45 0.30 -56.07 16 16 Si 0.93 41.17 27.47 68.60 1.88 43.05 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.23 -8.92 6.54 99.48 0.65 -8.26 16 20 C 0.17 3.99 5.08 30.62 0.16 4.15 16 21 F -0.17 -4.49 15.37 44.97 0.69 -3.80 16 22 F -0.16 -4.12 16.50 44.97 0.74 -3.38 16 23 H 0.09 0.79 7.93 -2.39 -0.02 0.77 16 24 H 0.06 0.94 7.10 -2.39 -0.02 0.92 16 25 H 0.10 0.88 7.84 -2.39 -0.02 0.87 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.79 7.10 -2.39 -0.02 0.78 16 28 H 0.09 0.65 7.93 -2.39 -0.02 0.63 16 29 H 0.19 2.66 7.77 -2.39 -0.02 2.64 16 30 H 0.15 3.26 7.06 -2.39 -0.02 3.24 16 31 H 0.42 14.90 8.50 -96.74 -0.82 14.08 16 32 H 0.05 1.81 7.20 -2.39 -0.02 1.79 16 33 H 0.03 1.14 7.12 -2.39 -0.02 1.13 16 34 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -73.78 306.41 0.73 -73.05 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.25 Total: 16.60 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 2.83 Total: -32.31 kcal Atomic # 7 Polarization: -97.01 SS G_CDS: -0.82 Total: -97.84 kcal Atomic # 8 Polarization: -74.32 SS G_CDS: -4.54 Total: -78.86 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 1.43 Total: -7.18 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 1.88 Total: 43.05 kcal Atomic # 16 Polarization: 83.78 SS G_CDS: -0.31 Total: 83.47 kcal Total: -73.78 0.73 -73.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882135901.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.487 kcal (2) G-P(sol) polarization free energy of solvation -73.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds