Wall clock time and date at job start Tue Mar 31 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 115.56426 * 2 1 4 4 C 1.52997 * 117.49633 * 145.69186 * 2 1 3 5 5 H 1.09009 * 117.50127 * 359.97438 * 4 2 1 6 6 C 1.53008 * 117.50018 * 214.98059 * 4 2 1 7 7 S 1.81395 * 109.47174 * 175.08763 * 6 4 2 8 8 O 1.42098 * 110.54559 * 68.37314 * 7 6 4 9 9 O 1.42105 * 110.54361 * 291.62027 * 7 6 4 10 10 N 1.65598 * 104.44720 * 180.02562 * 7 6 4 11 11 C 1.46500 * 120.00316 * 64.99710 * 10 7 6 12 12 C 1.50706 * 109.46949 * 165.00137 * 11 10 7 13 13 H 1.07995 * 120.00167 * 359.72205 * 12 11 10 14 14 C 1.37879 * 119.99394 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00338 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99424 * 180.02562 * 14 12 11 17 17 H 1.48492 * 109.47487 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47233 * 120.00158 * 16 14 12 19 19 H 1.48508 * 109.46883 * 239.99963 * 16 14 12 20 20 C 1.53000 * 60.03498 * 107.47747 * 4 2 1 21 21 F 1.39895 * 117.49932 * 107.50061 * 20 4 2 22 22 F 1.39900 * 117.49731 * 252.52346 * 20 4 2 23 23 H 1.08995 * 109.47419 * 274.31213 * 1 2 3 24 24 H 1.09005 * 109.46767 * 34.31286 * 1 2 3 25 25 H 1.09003 * 109.47360 * 154.30630 * 1 2 3 26 26 H 1.08997 * 109.47348 * 205.68791 * 3 2 1 27 27 H 1.08998 * 109.47514 * 325.69032 * 3 2 1 28 28 H 1.09004 * 109.47163 * 85.68556 * 3 2 1 29 29 H 1.08997 * 109.46758 * 55.08449 * 6 4 2 30 30 H 1.08997 * 109.46623 * 295.08469 * 6 4 2 31 31 H 0.97010 * 119.99914 * 244.99473 * 10 7 6 32 32 H 1.09000 * 109.47175 * 45.00163 * 11 10 7 33 33 H 1.09001 * 109.47297 * 284.99670 * 11 10 7 34 34 H 0.96996 * 119.99730 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 0.7649 5 1 1.6111 -1.8584 1.2686 6 6 3.5490 -0.7761 1.4715 7 16 4.1192 -2.2116 2.4225 8 8 4.5188 -3.2604 1.5510 9 8 3.2497 -2.4610 3.5185 10 7 5.5296 -1.7062 3.1279 11 6 5.5068 -0.6310 4.1227 12 6 6.8164 -0.6086 4.8682 13 1 7.5867 -1.3266 4.6283 14 6 7.0291 0.3253 5.8600 15 7 6.0890 1.1961 6.1558 16 14 8.6526 0.3535 6.7835 17 1 9.5356 -0.7221 6.2654 18 1 9.3099 1.6708 6.5891 19 1 8.4027 0.1338 8.2308 20 6 2.2367 -1.1219 -0.7651 21 9 3.4370 -0.8072 -1.4110 22 9 1.4339 -2.0685 -1.4106 23 1 -0.3634 0.0773 1.0247 24 1 -0.3633 0.8489 -0.5793 25 1 -0.3634 -0.9261 -0.4456 26 1 3.1824 1.3083 -0.4454 27 1 1.5813 2.0743 -0.5792 28 1 2.2773 1.7413 1.0248 29 1 3.3886 0.0657 2.1452 30 1 4.3017 -0.5095 0.7296 31 1 6.3709 -2.1221 2.8824 32 1 4.6916 -0.8033 4.8255 33 1 5.3581 0.3252 3.6210 34 1 6.2386 1.8528 6.8538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882135907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:04 Heat of formation + Delta-G solvation = -154.911580 kcal Electronic energy + Delta-G solvation = -20865.554922 eV Core-core repulsion = 17176.141827 eV Total energy + Delta-G solvation = -3689.413095 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.084 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.84773 -47.50933 -38.34037 -36.65558 -35.51868 -34.68239 -32.20461 -31.15383 -28.18508 -27.34030 -26.78530 -22.55767 -21.83773 -19.79840 -18.87370 -17.78434 -17.53546 -16.91189 -16.39533 -16.12624 -15.70859 -15.49680 -14.67952 -14.49335 -14.16661 -13.94123 -13.71546 -13.51830 -13.40792 -13.06792 -12.79603 -12.64888 -12.49196 -12.31289 -12.16605 -11.86469 -11.68463 -11.55056 -11.54279 -11.07565 -10.99379 -10.74983 -10.24320 -10.15550 -9.84340 -9.47007 -8.93687 -8.27163 -6.23329 -4.27602 0.65860 2.73277 2.77102 3.21802 3.25601 3.30277 3.35418 3.81775 3.91560 4.25213 4.31161 4.35154 4.55418 4.60975 4.68525 5.01249 5.14269 5.22983 5.29774 5.36466 5.49426 5.53446 5.56522 5.74697 5.79925 5.98004 6.35597 7.17482 7.27571 7.74743 7.76437 8.12375 8.77053 9.37980 10.87206 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026357 B = 0.004503 C = 0.004235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.073784 B = 6217.203643 C = 6610.584188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.101 4.101 3 C -0.126 4.126 4 C -0.137 4.137 5 H 0.138 0.862 6 C -0.616 4.616 7 S 2.614 3.386 8 O -0.972 6.972 9 O -0.955 6.955 10 N -1.104 6.104 11 C 0.241 3.759 12 C -0.529 4.529 13 H 0.067 0.933 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.904 3.096 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.203 3.797 21 F -0.153 7.153 22 F -0.156 7.156 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.411 0.589 32 H 0.040 0.960 33 H 0.021 0.979 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 0.685 -12.529 15.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.103 4.103 3 C -0.183 4.183 4 C -0.158 4.158 5 H 0.156 0.844 6 C -0.742 4.742 7 S 2.703 3.297 8 O -0.962 6.962 9 O -0.945 6.945 10 N -0.866 5.866 11 C 0.118 3.882 12 C -0.569 4.569 13 H 0.085 0.915 14 C -0.142 4.142 15 N -0.530 5.530 16 Si 0.731 3.269 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.166 3.834 21 F -0.133 7.133 22 F -0.137 7.137 23 H 0.097 0.903 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.170 0.830 30 H 0.159 0.841 31 H 0.245 0.755 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.140 0.080 -12.312 15.950 hybrid contribution 1.416 0.536 0.035 1.515 sum -8.724 0.616 -12.277 15.073 Atomic orbital electron populations 1.21472 0.89638 1.03515 1.03686 1.23017 0.97045 0.92715 0.97514 1.21450 1.00993 0.92001 1.03834 1.23323 0.98225 1.02869 0.91362 0.84392 1.30395 1.03958 1.25001 1.14847 1.04750 0.74784 0.75429 0.74711 1.93557 1.81619 1.52236 1.68838 1.93596 1.67517 1.83330 1.50017 1.55493 1.23530 1.52742 1.54824 1.19135 0.99674 0.83324 0.86055 1.21235 1.00038 1.16540 1.19046 0.91509 1.24973 0.97398 0.95125 0.96708 1.69933 1.33091 1.18536 1.31409 0.86348 0.82942 0.77994 0.79591 1.19567 1.20836 1.20764 1.20312 0.81198 0.94074 0.87804 1.92990 1.44772 1.92492 1.83056 1.93005 1.71967 1.65389 1.83295 0.90257 0.90805 0.91125 0.91000 0.90973 0.90079 0.83038 0.84112 0.75470 0.94212 0.96105 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.82 37.16 0.36 -0.67 16 2 C -0.10 -1.05 2.70 -154.47 -0.42 -1.47 16 3 C -0.13 -1.18 8.83 37.16 0.33 -0.85 16 4 C -0.14 -1.72 5.45 -90.62 -0.49 -2.22 16 5 H 0.14 1.57 8.06 -51.92 -0.42 1.16 16 6 C -0.62 -8.34 5.42 37.16 0.20 -8.14 16 7 S 2.61 45.76 5.41 -107.50 -0.58 45.17 16 8 O -0.97 -18.83 18.08 -57.54 -1.04 -19.87 16 9 O -0.95 -19.73 17.49 -57.54 -1.01 -20.74 16 10 N -1.10 -21.58 5.88 -11.65 -0.07 -21.65 16 11 C 0.24 5.72 5.88 -5.19 -0.03 5.69 16 12 C -0.53 -13.89 9.27 -34.44 -0.32 -14.21 16 13 H 0.07 1.70 7.65 -52.49 -0.40 1.29 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 16 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.20 2.60 5.08 -26.69 -0.14 2.47 16 21 F -0.15 -2.12 15.38 2.25 0.03 -2.08 16 22 F -0.16 -2.06 16.50 2.25 0.04 -2.02 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 25 H 0.07 0.58 7.10 -51.93 -0.37 0.21 16 26 H 0.07 0.71 7.10 -51.93 -0.37 0.34 16 27 H 0.07 0.54 7.92 -51.93 -0.41 0.13 16 28 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 29 H 0.15 1.88 7.77 -51.93 -0.40 1.48 16 30 H 0.14 1.75 7.06 -51.93 -0.37 1.38 16 31 H 0.41 7.54 8.50 -34.47 -0.29 7.24 16 32 H 0.04 1.03 7.69 -51.93 -0.40 0.63 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.61 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -32.32 310.01 -7.07 -39.39 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.23 Total: 3.59 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.60 Total: -17.86 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.67 Total: -45.70 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -2.05 Total: -40.61 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.58 Total: 45.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.32 -7.07 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882135907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.521 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds