Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48492 * 109.47088 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.46957 * 30.00398 * 3 2 1 6 6 H 1.48500 * 109.46703 * 150.00107 * 3 2 1 7 7 C 1.37875 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47249 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47054 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99463 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99573 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 11 16 16 C 1.38189 * 120.02634 * 260.25151 * 15 14 13 17 17 C 1.38233 * 120.07687 * 180.30167 * 16 15 14 18 18 C 1.38292 * 120.12118 * 359.70080 * 17 16 15 19 19 C 1.38216 * 120.04005 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 120.03665 * 179.97438 * 19 18 17 21 21 C 1.38673 * 120.01567 * 80.00032 * 15 14 13 22 22 O 1.35919 * 120.06281 * 359.97438 * 21 15 14 23 23 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47471 * 60.00231 * 9 7 2 25 25 H 1.08996 * 109.47125 * 299.99449 * 9 7 2 26 26 H 1.09005 * 109.46974 * 59.99891 * 10 9 7 27 27 H 1.08995 * 109.47175 * 299.99988 * 10 9 7 28 28 H 0.96995 * 120.00563 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46705 * 59.99937 * 14 13 11 30 30 H 1.08995 * 109.47183 * 299.99921 * 14 13 11 31 31 H 1.08004 * 119.96163 * 0.03113 * 16 15 14 32 32 H 1.08001 * 119.94086 * 179.72401 * 17 16 15 33 33 H 1.07996 * 119.97939 * 180.02562 * 18 17 16 34 34 H 0.96700 * 114.00199 * 269.72394 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 6 1.4919 -4.9671 -0.0033 12 8 0.2791 -4.9672 -0.0033 13 7 2.1659 -6.1343 -0.0037 14 6 1.4334 -7.4031 -0.0048 15 6 2.4127 -8.5485 -0.0057 16 6 2.7082 -9.2048 -1.1854 17 6 3.6016 -10.2596 -1.1863 18 6 4.2071 -10.6573 -0.0083 19 6 3.9194 -10.0008 1.1735 20 17 4.6790 -10.5005 2.6522 21 6 3.0219 -8.9412 1.1765 22 8 2.7372 -8.2936 2.3371 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8880 26 1 2.8721 -3.6051 0.8873 27 1 2.8720 -3.6036 -0.8926 28 1 3.1359 -6.1343 -0.0040 29 1 0.8071 -7.4603 -0.8951 30 1 0.8064 -7.4614 0.8849 31 1 2.2372 -8.8960 -2.1069 32 1 3.8275 -10.7738 -2.1088 33 1 4.9050 -11.4814 -0.0118 34 1 3.3188 -7.5436 2.5220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890759995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -75.671759 kcal Electronic energy + Delta-G solvation = -18925.950368 eV Core-core repulsion = 15656.326098 eV Total energy + Delta-G solvation = -3269.624270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48503 -38.97621 -37.05962 -36.83759 -34.75402 -33.45306 -31.68516 -30.78276 -30.11165 -26.85561 -25.10961 -23.05074 -22.16892 -21.38776 -19.72923 -18.74579 -17.17746 -16.66478 -16.52885 -15.98851 -15.60620 -15.28457 -14.97180 -14.61552 -14.40422 -13.69472 -13.31806 -13.20719 -12.97150 -12.59519 -12.27148 -12.15027 -11.85136 -11.75951 -11.40999 -11.17264 -10.93315 -10.82619 -10.60244 -9.96904 -9.68901 -9.47684 -9.13920 -9.01698 -8.91549 -8.83948 -8.32369 -5.96420 -4.01001 0.65557 0.67427 1.76116 2.97893 3.22975 3.33046 3.39134 3.41587 3.67422 3.75271 4.24634 4.46921 4.47410 4.78537 4.81239 5.04204 5.23286 5.38497 5.42477 5.52842 5.65776 5.84291 5.86567 6.04212 6.20654 6.21961 6.22232 6.62444 6.87465 7.25084 7.73723 7.82631 7.85623 8.06747 8.37904 8.74466 9.07617 9.62619 11.14494 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.002956 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.002445 B = 9468.692433 C = 9824.498104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.531 6.531 13 N -0.741 5.741 14 C 0.164 3.836 15 C -0.116 4.116 16 C -0.082 4.082 17 C -0.119 4.119 18 C -0.094 4.094 19 C -0.067 4.067 20 Cl -0.058 7.058 21 C 0.134 3.866 22 O -0.481 6.481 23 H 0.261 0.739 24 H 0.023 0.977 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.395 0.605 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.245 -23.479 -0.384 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.406 6.406 13 N -0.396 5.396 14 C 0.040 3.960 15 C -0.117 4.117 16 C -0.101 4.101 17 C -0.137 4.137 18 C -0.113 4.113 19 C -0.094 4.094 20 Cl -0.029 7.029 21 C 0.088 3.912 22 O -0.292 6.292 23 H 0.071 0.929 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.228 0.772 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 9.783 -23.791 -0.179 25.725 hybrid contribution 1.399 1.090 0.116 1.778 sum 11.183 -22.701 -0.064 25.306 Atomic orbital electron populations 1.69998 1.06054 1.26602 1.50147 1.25030 0.94826 0.99237 0.95304 0.86589 0.79771 0.83519 0.78055 1.20684 1.21221 1.19885 1.21216 0.92912 0.91018 1.51442 0.92620 1.18902 0.93177 0.89351 0.98657 1.21869 1.00722 0.91835 1.02470 1.21595 0.88679 0.85466 0.74371 1.90683 1.14462 1.87495 1.47968 1.46250 1.09854 1.05074 1.78437 1.20015 0.92248 0.80161 1.03554 1.20299 1.00058 0.99200 0.92138 1.21203 0.96585 0.94708 0.97567 1.21152 0.97165 0.97415 0.97947 1.21047 0.99972 0.99639 0.90622 1.21424 0.99245 0.99865 0.88914 1.98381 1.80267 1.90343 1.33899 1.18067 0.94198 0.92934 0.86030 1.84829 1.59388 1.48268 1.36683 0.92933 0.95833 0.95772 0.90244 0.90245 0.77153 0.90655 0.90010 0.84535 0.84574 0.84526 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 10 C -0.13 -2.54 5.64 -27.88 -0.16 -2.70 16 11 C 0.51 9.48 7.83 -10.99 -0.09 9.40 16 12 O -0.53 -12.36 15.98 5.56 0.09 -12.27 16 13 N -0.74 -9.75 5.55 -61.47 -0.34 -10.09 16 14 C 0.16 2.00 5.46 -5.19 -0.03 1.97 16 15 C -0.12 -1.13 5.26 -104.48 -0.55 -1.68 16 16 C -0.08 -0.65 9.66 -39.60 -0.38 -1.03 16 17 C -0.12 -0.79 10.04 -39.56 -0.40 -1.19 16 18 C -0.09 -0.69 9.83 -39.57 -0.39 -1.08 16 19 C -0.07 -0.62 6.33 -39.36 -0.25 -0.87 16 20 Cl -0.06 -0.53 28.50 -51.86 -1.48 -2.01 16 21 C 0.13 1.34 6.67 -39.19 -0.26 1.08 16 22 O -0.48 -4.97 12.20 -19.48 -0.24 -5.21 16 23 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.40 4.06 8.46 -40.82 -0.35 3.71 16 29 H 0.08 0.94 8.01 -51.93 -0.42 0.53 16 30 H 0.08 1.15 7.85 -51.93 -0.41 0.74 16 31 H 0.14 0.91 8.04 -52.48 -0.42 0.49 16 32 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 33 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.40 2.82 9.06 45.56 0.41 3.23 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -34.77 318.01 -7.74 -42.51 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -3.25 Total: 1.22 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -3.03 Total: -8.85 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 0.40 Total: -36.74 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.15 Total: -17.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.48 Total: -2.01 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.77 -7.74 -42.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890759995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.159 kcal (2) G-P(sol) polarization free energy of solvation -34.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds