Wall clock time and date at job start Tue Mar 31 2020 05:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48492 * 109.47088 * 270.00070 * 3 2 1 5 5 H 1.48498 * 109.46957 * 30.00398 * 3 2 1 6 6 H 1.48500 * 109.46703 * 150.00107 * 3 2 1 7 7 C 1.37875 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99862 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47249 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47054 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00345 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99463 * 180.02562 * 11 10 9 14 14 C 1.46509 * 119.99573 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46866 * 179.97438 * 14 13 11 16 16 C 1.38189 * 120.02634 * 260.25151 * 15 14 13 17 17 C 1.38233 * 120.07687 * 180.30167 * 16 15 14 18 18 C 1.38292 * 120.12118 * 359.70080 * 17 16 15 19 19 C 1.38216 * 120.04005 * 0.02562 * 18 17 16 20 20 Cl 1.73592 * 120.03665 * 179.97438 * 19 18 17 21 21 C 1.38673 * 120.01567 * 80.00032 * 15 14 13 22 22 O 1.35919 * 120.06281 * 359.97438 * 21 15 14 23 23 H 0.96997 * 120.00179 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47471 * 60.00231 * 9 7 2 25 25 H 1.08996 * 109.47125 * 299.99449 * 9 7 2 26 26 H 1.09005 * 109.46974 * 59.99891 * 10 9 7 27 27 H 1.08995 * 109.47175 * 299.99988 * 10 9 7 28 28 H 0.96995 * 120.00563 * 359.97438 * 13 11 10 29 29 H 1.09000 * 109.46705 * 59.99937 * 14 13 11 30 30 H 1.08995 * 109.47183 * 299.99921 * 14 13 11 31 31 H 1.08004 * 119.96163 * 0.03113 * 16 15 14 32 32 H 1.08001 * 119.94086 * 179.72401 * 17 16 15 33 33 H 1.07996 * 119.97939 * 180.02562 * 18 17 16 34 34 H 0.96700 * 114.00199 * 269.72394 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0027 11 6 1.4919 -4.9671 -0.0033 12 8 0.2791 -4.9672 -0.0033 13 7 2.1659 -6.1343 -0.0037 14 6 1.4334 -7.4031 -0.0048 15 6 2.4127 -8.5485 -0.0057 16 6 2.7082 -9.2048 -1.1854 17 6 3.6016 -10.2596 -1.1863 18 6 4.2071 -10.6573 -0.0083 19 6 3.9194 -10.0008 1.1735 20 17 4.6790 -10.5005 2.6522 21 6 3.0219 -8.9412 1.1765 22 8 2.7372 -8.2936 2.3371 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8880 26 1 2.8721 -3.6051 0.8873 27 1 2.8720 -3.6036 -0.8926 28 1 3.1359 -6.1343 -0.0040 29 1 0.8071 -7.4603 -0.8951 30 1 0.8064 -7.4614 0.8849 31 1 2.2372 -8.8960 -2.1069 32 1 3.8275 -10.7738 -2.1088 33 1 4.9050 -11.4814 -0.0118 34 1 3.3188 -7.5436 2.5220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890759995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:09 Heat of formation + Delta-G solvation = -101.280943 kcal Electronic energy + Delta-G solvation = -18927.060865 eV Core-core repulsion = 15656.326098 eV Total energy + Delta-G solvation = -3270.734767 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.29554 -40.36160 -37.75799 -37.53609 -35.98207 -35.50511 -33.16934 -32.15706 -30.78905 -28.30850 -26.65366 -23.69508 -23.65231 -22.55382 -21.24086 -19.46627 -18.84783 -17.78651 -17.40015 -17.18469 -16.88864 -16.44271 -16.42658 -16.14630 -15.23961 -14.80261 -14.69504 -14.26677 -14.16439 -13.87045 -13.61328 -13.24008 -13.21352 -12.81476 -12.74612 -12.48408 -12.43957 -12.07416 -11.90014 -11.62957 -11.53269 -11.29432 -10.84453 -10.55860 -10.12110 -9.86539 -9.64639 -8.16817 -6.30830 -0.00530 0.04441 1.10107 1.43197 1.45853 1.56728 1.72610 2.17461 2.43684 2.63759 3.08595 3.16280 3.46719 3.85932 4.07709 4.17469 4.20381 4.36445 4.49892 4.57386 4.60597 4.68038 4.81814 5.07669 5.10767 5.24971 5.35081 5.40931 5.52272 5.65312 5.65796 5.87248 6.18941 6.57831 6.63103 6.88104 7.34063 7.39655 8.95834 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029498 B = 0.002956 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.002445 B = 9468.692433 C = 9824.498104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.255 1.255 7 C -0.542 4.542 8 H 0.077 0.923 9 C 0.041 3.959 10 C -0.118 4.118 11 C 0.513 3.487 12 O -0.588 6.588 13 N -0.712 5.712 14 C 0.169 3.831 15 C -0.127 4.127 16 C -0.080 4.080 17 C -0.109 4.109 18 C -0.088 4.088 19 C -0.080 4.080 20 Cl -0.063 7.063 21 C 0.124 3.876 22 O -0.498 6.498 23 H 0.262 0.738 24 H -0.018 1.018 25 H -0.018 1.018 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.414 0.586 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.159 0.841 34 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.249 -24.469 -1.282 28.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.366 5.366 14 C 0.046 3.954 15 C -0.128 4.128 16 C -0.098 4.098 17 C -0.127 4.127 18 C -0.107 4.107 19 C -0.108 4.108 20 Cl -0.034 7.034 21 C 0.077 3.923 22 O -0.311 6.311 23 H 0.071 0.929 24 H 0.001 0.999 25 H 0.000 1.000 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.251 0.749 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 12.867 -24.826 -1.076 27.983 hybrid contribution 0.475 1.281 0.382 1.419 sum 13.342 -23.545 -0.694 27.071 Atomic orbital electron populations 1.70182 1.08324 1.27778 1.51552 1.26146 0.95714 1.03968 0.94703 0.85323 0.78680 0.77742 0.78508 1.19701 1.21325 1.17847 1.21725 0.94026 0.91605 1.50649 0.90519 1.18696 0.93760 0.92510 0.94705 1.21634 0.99270 0.89908 1.04960 1.21344 0.87778 0.86606 0.74076 1.90670 1.16783 1.88305 1.51013 1.45891 1.10700 1.04101 1.75882 1.19937 0.92758 0.80309 1.02409 1.20053 1.00508 0.99122 0.93120 1.21427 0.96491 0.94660 0.97258 1.21494 0.95776 0.96531 0.98908 1.21391 0.99673 0.99536 0.90055 1.21555 0.99619 1.00149 0.89443 1.98378 1.80291 1.90330 1.34432 1.18180 0.94781 0.93476 0.85835 1.84801 1.60135 1.48945 1.37179 0.92893 0.99936 1.00001 0.87643 0.87616 0.74932 0.90878 0.92176 0.83147 0.81378 0.82375 0.73475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.63 13.29 21.45 0.28 -59.34 16 2 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.25 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.40 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 9 C 0.04 2.26 4.26 29.85 0.13 2.39 16 10 C -0.12 -4.59 5.64 29.85 0.17 -4.42 16 11 C 0.51 19.25 7.83 87.65 0.69 19.93 16 12 O -0.59 -28.66 15.98 -3.02 -0.05 -28.71 16 13 N -0.71 -18.08 5.55 -466.77 -2.59 -20.67 16 14 C 0.17 4.09 5.46 85.63 0.47 4.56 16 15 C -0.13 -2.29 5.26 -19.77 -0.10 -2.40 16 16 C -0.08 -1.05 9.66 22.26 0.22 -0.83 16 17 C -0.11 -1.05 10.04 22.28 0.22 -0.83 16 18 C -0.09 -1.02 9.83 22.28 0.22 -0.80 16 19 C -0.08 -1.33 6.33 22.41 0.14 -1.18 16 20 Cl -0.06 -1.08 28.50 -2.72 -0.08 -1.16 16 21 C 0.12 2.32 6.67 22.52 0.15 2.47 16 22 O -0.50 -10.13 12.20 -92.63 -1.13 -11.26 16 23 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 24 H -0.02 -1.12 8.10 -2.39 -0.02 -1.13 16 25 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 26 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 27 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 28 H 0.41 7.58 8.46 -92.71 -0.78 6.79 16 29 H 0.07 1.82 8.01 -2.39 -0.02 1.80 16 30 H 0.06 1.74 7.85 -2.39 -0.02 1.72 16 31 H 0.15 1.55 8.04 -2.91 -0.02 1.52 16 32 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 33 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 34 H 0.41 5.60 9.06 -74.06 -0.67 4.93 16 Total: -1.00 -79.06 318.01 1.14 -77.92 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.31 Total: 8.60 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: 2.99 Total: -11.52 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.31 Total: -80.01 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.18 Total: -39.97 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -79.06 1.14 -77.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890759995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.362 kcal (2) G-P(sol) polarization free energy of solvation -79.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds