Wall clock time and date at job start Tue Mar 31 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38191 * 119.61150 * 2 1 4 4 C 1.38666 * 119.19330 * 180.02562 * 3 2 1 5 5 C 1.38617 * 118.43471 * 359.74682 * 4 3 2 6 6 C 1.50696 * 120.42377 * 180.27433 * 5 4 3 7 7 C 1.50702 * 109.47480 * 100.20544 * 6 5 4 8 8 O 1.20824 * 119.99620 * 0.02562 * 7 6 5 9 9 O 1.34232 * 120.00026 * 179.97438 * 7 6 5 10 10 C 1.45199 * 116.99824 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.46861 * 330.00117 * 10 9 7 12 12 C 1.52995 * 109.47009 * 90.00334 * 10 9 7 13 13 C 1.50696 * 109.46834 * 210.00324 * 10 9 7 14 14 H 1.08000 * 120.00148 * 359.97438 * 13 10 9 15 15 C 1.37884 * 119.99998 * 180.02562 * 13 10 9 16 16 N 1.31509 * 120.00199 * 179.97438 * 15 13 10 17 17 Si 1.86795 * 119.99761 * 359.97438 * 15 13 10 18 18 H 1.48510 * 109.47232 * 90.00401 * 17 15 13 19 19 H 1.48493 * 109.47497 * 210.00013 * 17 15 13 20 20 H 1.48502 * 109.47292 * 330.00404 * 17 15 13 21 21 C 1.38352 * 119.15209 * 0.47559 * 5 4 3 22 22 Cl 1.73599 * 119.63687 * 179.79697 * 21 5 4 23 23 N 1.31875 * 119.60700 * 179.97438 * 2 1 3 24 24 H 1.08996 * 109.46920 * 270.02196 * 1 2 3 25 25 H 1.08999 * 109.46644 * 30.02206 * 1 2 3 26 26 H 1.08996 * 109.47150 * 150.01891 * 1 2 3 27 27 H 1.07997 * 120.40462 * 0.02562 * 3 2 1 28 28 H 1.07992 * 120.78518 * 180.02562 * 4 3 2 29 29 H 1.09008 * 109.47028 * 220.20825 * 6 5 4 30 30 H 1.09000 * 109.47365 * 340.20482 * 6 5 4 31 31 H 1.09004 * 109.47027 * 180.02562 * 12 10 9 32 32 H 1.09000 * 109.47335 * 299.99751 * 12 10 9 33 33 H 1.08996 * 109.47486 * 60.00166 * 12 10 9 34 34 H 0.96994 * 120.00311 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1899 1.2014 0.0000 4 6 3.5765 1.1913 -0.0005 5 6 4.2276 -0.0324 0.0043 6 6 5.7332 -0.0957 0.0102 7 6 6.2193 -0.3656 1.4109 8 8 5.4246 -0.4939 2.3119 9 8 7.5351 -0.4644 1.6573 10 6 7.9309 -0.7261 3.0296 11 1 7.1954 -0.2943 3.7084 12 6 8.0108 -2.2367 3.2581 13 6 9.2796 -0.1065 3.2902 14 1 9.7887 0.4298 2.5030 15 6 9.8643 -0.2253 4.5333 16 7 11.0416 0.3150 4.7605 17 14 8.9842 -1.1536 5.8945 18 1 9.3738 -2.5859 5.8490 19 1 9.3630 -0.5792 7.2104 20 1 7.5160 -1.0338 5.7062 21 6 3.4775 -1.1950 -0.0005 22 17 4.2800 -2.7343 0.0001 23 7 2.1586 -1.1466 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8898 -0.5142 26 1 -0.3633 -0.8901 -0.5135 27 1 1.6501 2.1369 0.0004 28 1 4.1360 2.1150 -0.0001 29 1 6.0658 -0.8964 -0.6505 30 1 6.1382 0.8544 -0.3382 31 1 8.3075 -2.4332 4.2884 32 1 7.0352 -2.6849 3.0696 33 1 8.7462 -2.6685 2.5793 34 1 11.4527 0.2317 5.6351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892691907.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:59 Heat of formation + Delta-G solvation = -61.498191 kcal Electronic energy + Delta-G solvation = -19669.649537 eV Core-core repulsion = 16400.639880 eV Total energy + Delta-G solvation = -3269.009658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73706 -39.56981 -36.75537 -36.09676 -34.22346 -33.21307 -32.38434 -30.86962 -30.00447 -26.45832 -25.26440 -23.81307 -22.64395 -21.43024 -19.76179 -17.40072 -17.31640 -16.76267 -16.56990 -15.89277 -15.49579 -15.15196 -14.89372 -14.34647 -13.88496 -13.35117 -13.19024 -13.08587 -12.74796 -12.61375 -12.44336 -12.24422 -12.05773 -11.72643 -11.61485 -11.45632 -11.19507 -10.90659 -10.25026 -10.13124 -9.92433 -9.80895 -9.77630 -9.60026 -9.14309 -8.87780 -8.70397 -6.24555 -4.26978 0.70062 0.96776 1.74747 2.78886 3.17975 3.21892 3.30115 3.32798 3.65927 4.06150 4.25313 4.43198 4.53803 4.62676 4.93238 5.02693 5.06890 5.23946 5.31083 5.38064 5.42627 5.51977 5.72840 5.78846 5.89755 6.15740 6.26837 6.30210 6.39997 6.60198 7.01855 7.34694 7.49939 7.55422 8.20179 8.56567 8.82110 9.32690 10.87519 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027911 B = 0.004308 C = 0.004191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.963327 B = 6498.584471 C = 6678.725856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.142 3.858 3 C -0.170 4.170 4 C -0.046 4.046 5 C -0.109 4.109 6 C -0.079 4.079 7 C 0.456 3.544 8 O -0.513 6.513 9 O -0.339 6.339 10 C 0.192 3.808 11 H 0.046 0.954 12 C -0.170 4.170 13 C -0.526 4.526 14 H 0.087 0.913 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.878 3.122 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.263 1.263 21 C 0.199 3.801 22 Cl -0.025 7.025 23 N -0.480 5.480 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.954 0.577 -12.119 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.004 3.996 3 C -0.190 4.190 4 C -0.072 4.072 5 C -0.112 4.112 6 C -0.117 4.117 7 C 0.299 3.701 8 O -0.403 6.403 9 O -0.255 6.255 10 C 0.138 3.862 11 H 0.063 0.937 12 C -0.227 4.227 13 C -0.563 4.563 14 H 0.105 0.895 15 C -0.123 4.123 16 N -0.525 5.525 17 Si 0.707 3.293 18 H -0.199 1.199 19 H -0.217 1.217 20 H -0.187 1.187 21 C 0.035 3.965 22 Cl 0.003 6.997 23 N -0.191 5.191 24 H 0.100 0.900 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.161 0.839 28 H 0.166 0.834 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.392 -0.356 -11.674 21.787 hybrid contribution 0.267 0.007 1.008 1.042 sum -18.126 -0.349 -10.666 21.034 Atomic orbital electron populations 1.20739 0.88140 1.03661 1.03483 1.21192 0.96993 0.87245 0.94149 1.21991 0.94619 0.99474 1.02871 1.21510 0.94461 0.97293 0.93951 1.20007 0.95664 0.92616 1.02924 1.20257 0.90403 1.06777 0.94236 1.23056 0.82592 0.73797 0.90704 1.90626 1.56344 1.46429 1.46854 1.86499 1.22934 1.80099 1.35976 1.20925 0.97072 0.92577 0.75597 0.93655 1.22517 1.00214 0.98570 1.01416 1.20785 1.00646 1.35664 0.99219 0.89454 1.24720 0.94660 0.95130 0.97773 1.69829 1.15262 1.44020 1.23395 0.86983 0.80969 0.79933 0.81374 1.19945 1.21660 1.18743 1.21419 0.89579 0.87344 0.98185 1.98417 1.76718 1.28368 1.96163 1.66833 1.07950 1.30411 1.13938 0.90034 0.90333 0.90257 0.83904 0.83448 0.86443 0.86256 0.92572 0.94364 0.91750 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.77 10.17 36.01 0.37 -0.41 16 2 C 0.14 1.60 6.78 -82.59 -0.56 1.04 16 3 C -0.17 -1.67 9.74 -39.44 -0.38 -2.05 16 4 C -0.05 -0.51 9.82 -39.28 -0.39 -0.90 16 5 C -0.11 -1.48 4.44 -104.44 -0.46 -1.95 16 6 C -0.08 -1.08 5.42 -29.04 -0.16 -1.23 16 7 C 0.46 8.84 7.71 36.01 0.28 9.12 16 8 O -0.51 -11.32 15.17 -18.75 -0.28 -11.61 16 9 O -0.34 -7.62 9.86 -39.26 -0.39 -8.01 16 10 C 0.19 4.85 2.15 -27.89 -0.06 4.79 16 11 H 0.05 1.21 6.21 -51.93 -0.32 0.89 16 12 C -0.17 -3.93 9.03 37.15 0.34 -3.60 16 13 C -0.53 -15.01 9.48 -34.44 -0.33 -15.34 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 16 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 17 Si 0.88 21.79 24.37 -169.99 -4.14 17.65 16 18 H -0.27 -6.50 6.87 56.52 0.39 -6.12 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 21 C 0.20 2.96 7.16 -17.44 -0.12 2.84 16 22 Cl -0.03 -0.38 27.50 -51.86 -1.43 -1.80 16 23 N -0.48 -6.87 10.25 -6.61 -0.07 -6.94 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 0.39 8.08 -51.93 -0.42 -0.03 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 29 H 0.12 1.43 7.37 -51.92 -0.38 1.04 16 30 H 0.12 1.27 8.03 -51.93 -0.42 0.86 16 31 H 0.06 1.32 3.27 -51.93 -0.17 1.15 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 306.98 15.07 4.63 4.63 Total: -1.00 -33.62 306.98 -6.34 -39.96 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -3.85 Total: -2.54 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.58 Total: -5.47 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.71 Total: -32.81 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.67 Total: -19.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.43 Total: -1.80 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.62 -6.34 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892691907.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.534 kcal (2) G-P(sol) polarization free energy of solvation -33.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds