Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48496 * 109.47285 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47245 * 30.00113 * 3 2 1 6 6 H 1.48505 * 109.46861 * 150.00008 * 3 2 1 7 7 C 1.37872 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46996 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47372 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99451 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00663 * 179.97438 * 11 10 9 14 14 O 1.41603 * 119.99363 * 4.94828 * 13 11 10 15 15 C 1.46494 * 120.00476 * 184.95107 * 13 11 10 16 16 C 1.50706 * 109.47075 * 283.71154 * 15 13 11 17 17 C 1.38234 * 120.00738 * 102.70861 * 16 15 13 18 18 C 1.38221 * 120.01177 * 179.97438 * 17 16 15 19 19 C 1.38264 * 120.02766 * 0.04755 * 18 17 16 20 20 C 1.38196 * 120.01372 * 359.97282 * 19 18 17 21 21 C 1.38334 * 120.00539 * 282.44230 * 16 15 13 22 22 Cl 1.73604 * 120.01251 * 359.96527 * 21 16 15 23 23 H 0.96994 * 120.00029 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47312 * 60.00059 * 9 7 2 25 25 H 1.09002 * 109.47125 * 300.00097 * 9 7 2 26 26 H 1.08992 * 109.47689 * 59.99816 * 10 9 7 27 27 H 1.09002 * 109.47026 * 299.99868 * 10 9 7 28 28 H 0.96699 * 114.00574 * 359.97438 * 14 13 11 29 29 H 1.09002 * 109.47425 * 43.70696 * 15 13 11 30 30 H 1.09001 * 109.47515 * 163.71600 * 15 13 11 31 31 H 1.07998 * 119.99379 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98503 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.98934 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00945 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0015 11 6 1.4921 -4.9671 -0.0020 12 8 0.2793 -4.9671 -0.0020 13 7 2.1659 -6.1343 -0.0024 14 8 3.5780 -6.1365 0.1035 15 6 1.4376 -7.4006 -0.1124 16 6 0.7935 -7.7262 1.2106 17 6 -0.5610 -7.5166 1.3902 18 6 -1.1519 -7.8158 2.6034 19 6 -0.3886 -8.3238 3.6383 20 6 0.9657 -8.5334 3.4600 21 6 1.5566 -8.2401 2.2437 22 17 3.2563 -8.5109 2.0163 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6241 -2.5574 0.8880 26 1 2.8714 -3.6046 0.8889 27 1 2.8728 -3.6038 -0.8910 28 1 3.9688 -5.2546 0.1709 29 1 0.6679 -7.3117 -0.8791 30 1 2.1312 -8.1963 -0.3843 31 1 -1.1577 -7.1199 0.5823 32 1 -2.2103 -7.6522 2.7432 33 1 -0.8509 -8.5569 4.5861 34 1 1.5618 -8.9306 4.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904193656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -21.106782 kcal Electronic energy + Delta-G solvation = -19688.706565 eV Core-core repulsion = 16421.448410 eV Total energy + Delta-G solvation = -3267.258155 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.91399 -38.86577 -36.41127 -36.28907 -33.87286 -33.19438 -31.08523 -30.79394 -30.29642 -26.86563 -25.07897 -22.77116 -22.28713 -21.15838 -19.84951 -17.64799 -17.24318 -16.20089 -16.06375 -15.84800 -15.52342 -14.95553 -14.45989 -14.13227 -13.89708 -13.64129 -13.35321 -13.16775 -12.74794 -12.32546 -12.16725 -12.04510 -11.69877 -11.48632 -11.32822 -11.26036 -10.96942 -10.71579 -10.64279 -10.06017 -9.75845 -9.45025 -9.16542 -8.88052 -8.73692 -8.41672 -8.34452 -6.00791 -4.05593 1.00390 1.19874 2.14062 2.32992 3.01349 3.30914 3.37308 3.39634 3.62488 4.36137 4.49916 4.62339 4.76627 4.91849 5.19235 5.25028 5.34582 5.44402 5.49182 5.67448 5.84454 5.87263 6.04053 6.10519 6.12810 6.29617 6.38104 6.45713 6.73897 6.84031 7.67958 7.77412 7.98107 8.00518 8.30000 8.50673 9.01951 9.58466 11.10106 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023008 B = 0.004166 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.696258 B = 6719.242267 C = 7261.447691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.040 3.960 10 C -0.138 4.138 11 C 0.500 3.500 12 O -0.513 6.513 13 N -0.476 5.476 14 O -0.332 6.332 15 C 0.181 3.819 16 C -0.104 4.104 17 C -0.069 4.069 18 C -0.122 4.122 19 C -0.104 4.104 20 C -0.123 4.123 21 C -0.018 4.018 22 Cl -0.061 7.061 23 H 0.261 0.739 24 H 0.025 0.975 25 H 0.024 0.976 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.389 0.611 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.129 0.871 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 -19.170 4.179 19.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.074 0.926 9 C 0.003 3.997 10 C -0.177 4.177 11 C 0.290 3.710 12 O -0.387 6.387 13 N -0.255 5.255 14 O -0.226 6.226 15 C 0.061 3.939 16 C -0.106 4.106 17 C -0.088 4.088 18 C -0.140 4.140 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.045 4.045 22 Cl -0.032 7.032 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.236 0.764 29 H 0.115 0.885 30 H 0.116 0.884 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.147 0.853 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.271 -19.706 4.103 20.257 hybrid contribution 1.012 1.532 0.177 1.845 sum 3.283 -18.174 4.280 18.957 Atomic orbital electron populations 1.69991 1.06070 1.26678 1.50020 1.25010 0.94822 0.99249 0.95174 0.86584 0.79785 0.83443 0.78108 1.20626 1.21191 1.19859 1.21187 0.92930 0.90915 1.51677 0.92564 1.18876 0.92995 0.89100 0.98732 1.21950 1.01279 0.91996 1.02521 1.21914 0.88845 0.84904 0.75303 1.90693 1.13424 1.85705 1.48846 1.49807 0.93772 1.06103 1.75795 1.89013 1.02104 1.32691 1.98810 1.20220 0.94857 0.85343 0.93489 1.20120 0.94035 1.00122 0.96357 1.21182 0.93507 0.95967 0.98162 1.21278 1.00525 0.98958 0.93211 1.21132 0.93178 0.98732 0.99235 1.21006 0.95414 1.01883 0.95835 1.20872 0.85550 1.02536 0.95517 1.98376 1.12974 1.94741 1.97083 0.92892 0.95663 0.95730 0.90045 0.89755 0.76419 0.88464 0.88370 0.84417 0.85314 0.85290 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 10 C -0.14 -2.69 4.19 -27.88 -0.12 -2.80 16 11 C 0.50 9.43 7.62 -10.99 -0.08 9.35 16 12 O -0.51 -11.22 14.68 5.56 0.08 -11.14 16 13 N -0.48 -7.34 3.76 -61.47 -0.23 -7.58 16 14 O -0.33 -4.42 13.93 -11.47 -0.16 -4.58 16 15 C 0.18 2.46 5.16 -5.19 -0.03 2.43 16 16 C -0.10 -1.43 5.13 -104.59 -0.54 -1.97 16 17 C -0.07 -0.93 8.85 -39.59 -0.35 -1.28 16 18 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 19 C -0.10 -1.11 10.05 -39.59 -0.40 -1.51 16 20 C -0.12 -1.41 9.83 -39.55 -0.39 -1.79 16 21 C -0.02 -0.23 6.31 -39.50 -0.25 -0.48 16 22 Cl -0.06 -0.75 26.54 -51.86 -1.38 -2.13 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.08 1.45 7.76 -51.93 -0.40 1.04 16 27 H 0.08 1.48 8.08 -51.93 -0.42 1.06 16 28 H 0.39 4.19 7.10 45.56 0.32 4.51 16 29 H 0.10 1.26 7.76 -51.93 -0.40 0.86 16 30 H 0.10 1.17 7.47 -51.93 -0.39 0.79 16 31 H 0.14 1.86 7.84 -52.49 -0.41 1.45 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -33.13 311.52 -7.71 -40.84 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -3.35 Total: 2.08 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.08 Total: -12.31 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.51 Total: -33.83 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.08 Total: -15.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.38 Total: -2.13 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.13 -7.71 -40.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904193656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.734 kcal (2) G-P(sol) polarization free energy of solvation -33.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds