Wall clock time and date at job start Tue Mar 31 2020 05:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99617 * 2 1 4 4 H 1.48496 * 109.47285 * 269.99972 * 3 2 1 5 5 H 1.48500 * 109.47245 * 30.00113 * 3 2 1 6 6 H 1.48505 * 109.46861 * 150.00008 * 3 2 1 7 7 C 1.37872 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00274 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46996 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47372 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99451 * 359.97438 * 11 10 9 13 13 N 1.34771 * 120.00663 * 179.97438 * 11 10 9 14 14 O 1.41603 * 119.99363 * 4.94828 * 13 11 10 15 15 C 1.46494 * 120.00476 * 184.95107 * 13 11 10 16 16 C 1.50706 * 109.47075 * 283.71154 * 15 13 11 17 17 C 1.38234 * 120.00738 * 102.70861 * 16 15 13 18 18 C 1.38221 * 120.01177 * 179.97438 * 17 16 15 19 19 C 1.38264 * 120.02766 * 0.04755 * 18 17 16 20 20 C 1.38196 * 120.01372 * 359.97282 * 19 18 17 21 21 C 1.38334 * 120.00539 * 282.44230 * 16 15 13 22 22 Cl 1.73604 * 120.01251 * 359.96527 * 21 16 15 23 23 H 0.96994 * 120.00029 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47312 * 60.00059 * 9 7 2 25 25 H 1.09002 * 109.47125 * 300.00097 * 9 7 2 26 26 H 1.08992 * 109.47689 * 59.99816 * 10 9 7 27 27 H 1.09002 * 109.47026 * 299.99868 * 10 9 7 28 28 H 0.96699 * 114.00574 * 359.97438 * 14 13 11 29 29 H 1.09002 * 109.47425 * 43.70696 * 15 13 11 30 30 H 1.09001 * 109.47515 * 163.71600 * 15 13 11 31 31 H 1.07998 * 119.99379 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98503 * 180.02562 * 18 17 16 33 33 H 1.07995 * 119.98934 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00945 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 6 2.2455 -3.6619 -0.0015 11 6 1.4921 -4.9671 -0.0020 12 8 0.2793 -4.9671 -0.0020 13 7 2.1659 -6.1343 -0.0024 14 8 3.5780 -6.1365 0.1035 15 6 1.4376 -7.4006 -0.1124 16 6 0.7935 -7.7262 1.2106 17 6 -0.5610 -7.5166 1.3902 18 6 -1.1519 -7.8158 2.6034 19 6 -0.3886 -8.3238 3.6383 20 6 0.9657 -8.5334 3.4600 21 6 1.5566 -8.2401 2.2437 22 17 3.2563 -8.5109 2.0163 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5563 -0.8920 25 1 0.6241 -2.5574 0.8880 26 1 2.8714 -3.6046 0.8889 27 1 2.8728 -3.6038 -0.8910 28 1 3.9688 -5.2546 0.1709 29 1 0.6679 -7.3117 -0.8791 30 1 2.1312 -8.1963 -0.3843 31 1 -1.1577 -7.1199 0.5823 32 1 -2.2103 -7.6522 2.7432 33 1 -0.8509 -8.5569 4.5861 34 1 1.5618 -8.9306 4.2683 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904193656.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:41 Heat of formation + Delta-G solvation = -42.417572 kcal Electronic energy + Delta-G solvation = -19689.630670 eV Core-core repulsion = 16421.448410 eV Total energy + Delta-G solvation = -3268.182260 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14889 -40.01351 -37.61122 -37.34062 -35.68230 -34.52844 -32.96301 -31.75510 -31.44175 -28.44969 -26.65093 -23.90971 -23.68259 -22.41416 -21.28203 -19.26049 -18.22626 -18.04484 -17.44942 -16.98355 -16.53196 -16.42355 -16.14818 -15.51349 -14.96477 -14.79980 -14.66603 -14.32596 -14.18933 -13.95982 -13.50242 -13.32792 -13.24382 -12.82643 -12.64239 -12.48964 -12.42840 -12.24048 -11.96648 -11.67123 -11.65517 -11.31953 -10.91272 -10.56436 -9.91850 -9.76179 -9.57767 -8.18082 -6.31677 0.03858 0.25935 1.14628 1.20494 1.43335 1.45138 1.54510 1.55993 2.42155 2.68664 3.15622 3.15967 3.64962 3.78169 4.03530 4.18724 4.32856 4.35432 4.42887 4.48966 4.52745 4.71278 4.72753 4.93823 5.11214 5.21874 5.24519 5.40229 5.47463 5.49549 5.60746 5.83972 5.84112 6.16320 6.77907 6.85635 7.09657 7.38688 8.94442 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023008 B = 0.004166 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.696258 B = 6719.242267 C = 7261.447691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.047 3.953 10 C -0.126 4.126 11 C 0.499 3.501 12 O -0.554 6.554 13 N -0.466 5.466 14 O -0.323 6.323 15 C 0.179 3.821 16 C -0.121 4.121 17 C -0.090 4.090 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.126 4.126 21 C -0.031 4.031 22 Cl -0.059 7.059 23 H 0.263 0.737 24 H -0.014 1.014 25 H -0.017 1.017 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.402 0.598 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.162 0.838 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 -19.603 5.136 20.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.580 4.580 8 H 0.095 0.905 9 C 0.010 3.990 10 C -0.166 4.166 11 C 0.289 3.711 12 O -0.431 6.431 13 N -0.241 5.241 14 O -0.220 6.220 15 C 0.059 3.941 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.146 4.146 19 C -0.117 4.117 20 C -0.144 4.144 21 C -0.058 4.058 22 Cl -0.030 7.030 23 H 0.071 0.929 24 H 0.005 0.995 25 H 0.002 0.998 26 H 0.123 0.877 27 H 0.128 0.872 28 H 0.251 0.749 29 H 0.114 0.886 30 H 0.133 0.867 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.180 0.820 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.381 -20.176 5.058 21.257 hybrid contribution 0.371 1.584 -0.093 1.630 sum 4.752 -18.592 4.965 19.822 Atomic orbital electron populations 1.70165 1.08235 1.27783 1.51451 1.26075 0.95667 1.03767 0.94643 0.85365 0.78709 0.77961 0.78488 1.19761 1.21296 1.17976 1.21693 0.94021 0.91526 1.50799 0.90549 1.18632 0.93499 0.91978 0.94934 1.21704 0.99909 0.90061 1.04891 1.21664 0.88298 0.85685 0.75454 1.90684 1.15038 1.86446 1.50965 1.49583 0.94848 1.05729 1.73958 1.89035 1.00337 1.33882 1.98700 1.20389 0.95145 0.84606 0.93939 1.20126 0.94298 1.01263 0.96604 1.21253 0.93745 0.96942 0.98899 1.21579 1.01713 0.98532 0.92796 1.21526 0.92881 0.97211 1.00090 1.21355 0.96043 1.01220 0.95785 1.21035 0.85747 1.03000 0.95998 1.98368 1.12709 1.94743 1.97130 0.92872 0.99535 0.99819 0.87672 0.87165 0.74895 0.88583 0.86678 0.85664 0.83524 0.82042 0.83036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.62 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 8 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 9 C 0.05 2.54 4.26 29.85 0.13 2.67 16 10 C -0.13 -4.84 4.19 29.85 0.13 -4.71 16 11 C 0.50 18.89 7.62 87.66 0.67 19.56 16 12 O -0.55 -25.25 14.68 -3.04 -0.04 -25.30 16 13 N -0.47 -13.91 3.76 -466.79 -1.76 -15.67 16 14 O -0.32 -7.85 13.93 -38.79 -0.54 -8.39 16 15 C 0.18 4.77 5.16 85.64 0.44 5.22 16 16 C -0.12 -3.28 5.13 -19.84 -0.10 -3.39 16 17 C -0.09 -2.44 8.85 22.26 0.20 -2.24 16 18 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 19 C -0.10 -1.89 10.05 22.27 0.22 -1.66 16 20 C -0.13 -2.61 9.83 22.29 0.22 -2.39 16 21 C -0.03 -0.76 6.31 22.32 0.14 -0.62 16 22 Cl -0.06 -1.35 26.54 -2.72 -0.07 -1.42 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H -0.01 -0.84 8.10 -2.39 -0.02 -0.86 16 25 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 26 H 0.11 3.52 7.76 -2.39 -0.02 3.50 16 27 H 0.11 3.64 8.08 -2.39 -0.02 3.62 16 28 H 0.40 7.45 7.10 -74.06 -0.53 6.93 16 29 H 0.10 2.56 7.76 -2.39 -0.02 2.54 16 30 H 0.12 2.62 7.47 -2.39 -0.02 2.61 16 31 H 0.13 3.62 7.84 -2.91 -0.02 3.60 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 33 H 0.16 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -73.46 311.52 3.45 -70.00 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.60 Total: 13.08 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 2.96 Total: -19.80 kcal Atomic # 7 Polarization: -72.33 SS G_CDS: -1.47 Total: -73.80 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.58 Total: -33.68 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.42 kcal Total: -73.46 3.45 -70.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904193656.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.587 kcal (2) G-P(sol) polarization free energy of solvation -73.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds