Wall clock time and date at job start Tue Mar 31 2020 06:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38560 * 120.74340 * 2 1 4 4 C 1.38752 * 119.34301 * 179.97438 * 3 2 1 5 5 Cl 1.73607 * 119.56023 * 179.97438 * 4 3 2 6 6 N 1.31602 * 120.87797 * 359.74779 * 4 3 2 7 7 C 1.32781 * 121.61433 * 0.52197 * 6 4 3 8 8 C 1.48065 * 119.71474 * 179.75017 * 7 6 4 9 9 O 1.21433 * 120.00051 * 179.72648 * 8 7 6 10 10 O 1.34682 * 120.00131 * 359.44924 * 8 7 6 11 11 C 1.45196 * 117.00253 * 180.26982 * 10 8 7 12 12 C 1.52994 * 109.47253 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46859 * 180.02562 * 13 12 11 15 15 H 1.08005 * 120.00170 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99945 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00088 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99976 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46702 * 59.99904 * 18 16 14 20 20 H 1.48501 * 109.46843 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46999 * 299.99796 * 18 16 14 22 22 C 1.38618 * 120.74573 * 179.97438 * 2 1 3 23 23 H 1.09003 * 109.47310 * 270.01924 * 1 2 3 24 24 H 1.09004 * 109.47206 * 30.01900 * 1 2 3 25 25 H 1.08998 * 109.47185 * 150.02124 * 1 2 3 26 26 H 1.08001 * 120.33257 * 0.02562 * 3 2 1 27 27 H 1.08998 * 109.47461 * 300.00619 * 11 10 8 28 28 H 1.09010 * 109.46796 * 60.00409 * 11 10 8 29 29 H 1.08998 * 109.47242 * 300.00569 * 12 11 10 30 30 H 1.08996 * 109.46952 * 60.00478 * 12 11 10 31 31 H 1.08992 * 109.47275 * 299.99826 * 13 12 11 32 32 H 1.09004 * 109.46935 * 60.00637 * 13 12 11 33 33 H 0.96994 * 120.00186 * 180.02562 * 17 16 14 34 34 H 1.08008 * 120.45957 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2153 1.1909 0.0000 4 6 3.6024 1.1570 0.0005 5 17 4.4955 2.6457 -0.0001 6 7 4.2500 0.0113 0.0060 7 6 3.6082 -1.1511 0.0009 8 6 4.3791 -2.4152 0.0018 9 8 3.7974 -3.4811 0.0022 10 8 5.7255 -2.3828 -0.0034 11 6 6.4157 -3.6603 -0.0082 12 6 7.9271 -3.4234 -0.0131 13 6 8.6543 -4.7696 -0.0189 14 6 10.1431 -4.5362 -0.0231 15 1 10.5318 -3.5286 -0.0214 16 6 11.0091 -5.6092 -0.0291 17 7 10.5358 -6.8362 -0.0307 18 14 12.8546 -5.3200 -0.0336 19 1 13.2387 -4.5556 1.1803 20 1 13.5603 -6.6265 -0.0393 21 1 13.2317 -4.5478 -1.2447 22 6 2.2156 -1.1913 0.0005 23 1 -0.3634 0.0003 1.0277 24 1 -0.3634 0.8898 -0.5141 25 1 -0.3633 -0.8901 -0.5135 26 1 1.6930 2.1362 0.0004 27 1 6.1397 -4.2257 0.8818 28 1 6.1328 -4.2226 -0.8982 29 1 8.2034 -2.8577 -0.9030 30 1 8.2097 -2.8613 0.8769 31 1 8.3781 -5.3355 0.8707 32 1 8.3717 -5.3313 -0.9093 33 1 11.1449 -7.5910 -0.0346 34 1 1.6954 -2.1379 0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909690509.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:03 Heat of formation + Delta-G solvation = -94.013500 kcal Electronic energy + Delta-G solvation = -18576.750604 eV Core-core repulsion = 15306.330977 eV Total energy + Delta-G solvation = -3270.419627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.10735 -40.90675 -38.02949 -37.72403 -35.99068 -35.29502 -33.71152 -32.56770 -29.16123 -28.97710 -26.56630 -24.87414 -23.96731 -22.22197 -22.01862 -19.26768 -18.67687 -18.24727 -17.83906 -17.51818 -17.15165 -16.50281 -16.44644 -16.12776 -15.42464 -14.89305 -14.18671 -14.07469 -13.97280 -13.90198 -13.81877 -13.59245 -12.85813 -12.84091 -12.73145 -12.55868 -12.47235 -12.39263 -12.16894 -12.12750 -11.56556 -11.46634 -11.30112 -10.92457 -10.75855 -10.57696 -10.30683 -8.22728 -6.34267 -0.81569 -0.16760 0.60411 1.10568 1.34577 1.41064 1.43908 1.52121 2.39383 2.40456 2.90491 3.10866 3.45388 3.55862 3.73722 3.92669 3.95619 3.98792 4.05674 4.36305 4.49259 4.58967 4.76014 4.79688 4.82905 5.02560 5.03263 5.09831 5.24066 5.36924 5.46659 5.61858 5.78546 6.13565 6.19945 6.55254 6.80682 7.34960 8.89335 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024946 B = 0.002949 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.164808 B = 9491.150088 C =10582.245515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.024 4.024 3 C -0.111 4.111 4 C 0.160 3.840 5 Cl -0.020 7.020 6 N -0.471 5.471 7 C 0.093 3.907 8 C 0.516 3.484 9 O -0.516 6.516 10 O -0.341 6.341 11 C 0.075 3.925 12 C -0.094 4.094 13 C 0.029 3.971 14 C -0.546 4.546 15 H 0.062 0.938 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.101 4.101 23 H 0.100 0.900 24 H 0.101 0.899 25 H 0.087 0.913 26 H 0.192 0.808 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.063 0.937 31 H -0.001 1.001 32 H -0.001 1.001 33 H 0.265 0.735 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.115 19.500 0.091 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.032 4.032 3 C -0.131 4.131 4 C -0.008 4.008 5 Cl 0.009 6.991 6 N -0.185 5.185 7 C -0.042 4.042 8 C 0.360 3.640 9 O -0.405 6.405 10 O -0.256 6.256 11 C 0.002 3.998 12 C -0.132 4.132 13 C -0.009 4.009 14 C -0.584 4.584 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.572 5.572 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.121 4.121 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.106 0.894 26 H 0.209 0.791 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.074 0.926 34 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -23.192 19.063 0.096 30.021 hybrid contribution 0.720 -0.470 0.004 0.860 sum -22.472 18.593 0.100 29.167 Atomic orbital electron populations 1.21022 0.85193 1.05755 1.05074 1.20766 0.99548 0.90091 0.92757 1.22472 0.90990 1.02049 0.97595 1.21982 0.90304 0.87967 1.00547 1.98429 1.77055 1.27206 1.96441 1.66774 1.42640 0.97894 1.11238 1.19812 0.91314 0.88316 1.04787 1.21181 0.81615 0.88697 0.72507 1.90829 1.71373 1.31536 1.46720 1.86663 1.19489 1.36982 1.82470 1.23291 0.92521 0.81595 1.02411 1.21460 0.89865 0.99496 1.02356 1.18914 0.94538 0.91750 0.95651 1.21591 0.92429 0.93236 1.51169 0.91934 1.25994 1.04506 0.94748 0.94503 1.70082 1.36941 0.98918 1.51289 0.85450 0.78538 0.77516 0.79255 1.19126 1.20668 1.19112 1.22346 0.91472 1.02137 0.96151 0.88155 0.88048 0.89386 0.79078 0.91187 0.91178 0.91796 0.91792 0.98225 0.98217 0.92588 0.81311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.33 10.06 71.24 0.72 0.39 16 2 C -0.02 -0.27 5.91 -19.70 -0.12 -0.38 16 3 C -0.11 -1.34 9.59 22.47 0.22 -1.12 16 4 C 0.16 3.28 7.27 84.85 0.62 3.90 16 5 Cl -0.02 -0.38 29.11 -2.72 -0.08 -0.46 16 6 N -0.47 -13.21 10.10 -175.88 -1.78 -14.98 16 7 C 0.09 2.52 6.75 41.87 0.28 2.80 16 8 C 0.52 17.41 7.95 70.43 0.56 17.97 16 9 O -0.52 -18.45 16.11 20.05 0.32 -18.13 16 10 O -0.34 -12.90 10.04 -55.92 -0.56 -13.46 16 11 C 0.08 2.96 5.47 71.98 0.39 3.36 16 12 C -0.09 -4.17 5.53 30.59 0.17 -4.00 16 13 C 0.03 1.55 4.97 29.85 0.15 1.70 16 14 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 15 H 0.06 3.49 7.74 -2.91 -0.02 3.47 16 16 C 0.00 0.03 5.46 84.66 0.46 0.49 16 17 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 18 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C -0.10 -1.84 9.34 22.62 0.21 -1.62 16 23 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 24 H 0.10 -0.08 8.10 -2.38 -0.02 -0.10 16 25 H 0.09 0.20 8.10 -2.39 -0.02 0.18 16 26 H 0.19 0.78 8.06 -2.91 -0.02 0.75 16 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 28 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 29 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 33 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.17 2.65 7.64 -2.91 -0.02 2.63 16 Total: -1.00 -72.48 321.84 5.22 -67.26 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: 1.11 Total: -1.93 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: 3.89 Total: -8.09 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.49 Total: -72.13 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -0.24 Total: -31.59 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -72.48 5.22 -67.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909690509.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.749 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds