Wall clock time and date at job start Tue Mar 31 2020 05:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99762 * 2 1 4 4 H 1.48499 * 109.47223 * 355.35613 * 3 2 1 5 5 H 1.48498 * 109.46987 * 115.35288 * 3 2 1 6 6 H 1.48499 * 109.47127 * 235.35460 * 3 2 1 7 7 C 1.38812 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99749 * 352.27831 * 7 2 1 9 9 N 1.36934 * 119.99756 * 172.27789 * 7 2 1 10 10 C 1.47056 * 136.06095 * 6.42077 * 9 7 2 11 11 C 1.53755 * 87.89140 * 152.95995 * 10 9 7 12 12 C 1.52999 * 114.57104 * 272.66319 * 11 10 9 13 13 N 1.46503 * 109.47189 * 268.66729 * 12 11 10 14 14 C 1.34772 * 120.00106 * 180.02562 * 13 12 11 15 15 O 1.21649 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.47180 * 120.00059 * 180.02562 * 14 13 12 17 17 C 1.35090 * 122.48551 * 179.73745 * 16 14 13 18 18 S 1.76197 * 108.21915 * 179.90856 * 17 16 14 19 19 C 1.76061 * 90.15422 * 0.29405 * 18 17 16 20 20 O 1.35496 * 125.17523 * 179.86775 * 19 18 17 21 21 N 1.29251 * 109.64000 * 359.82456 * 19 18 17 22 22 C 1.47064 * 136.05365 * 186.78172 * 9 7 2 23 23 H 0.97000 * 119.99965 * 184.85770 * 1 2 3 24 24 H 1.09008 * 113.46970 * 267.69162 * 10 9 7 25 25 H 1.09002 * 113.46729 * 38.12904 * 10 9 7 26 26 H 1.09000 * 114.08918 * 139.78137 * 11 10 9 27 27 H 1.08995 * 109.47349 * 28.67175 * 12 11 10 28 28 H 1.09005 * 109.47118 * 148.67423 * 12 11 10 29 29 H 0.97004 * 119.99869 * 0.02562 * 13 12 11 30 30 H 1.08002 * 125.89445 * 0.02562 * 17 16 14 31 31 H 0.96697 * 113.99336 * 269.95216 * 20 19 18 32 32 H 1.09007 * 113.47044 * 321.87366 * 22 9 7 33 33 H 1.09007 * 113.46659 * 92.25276 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2891 2.7442 -0.1134 5 1 3.0168 1.7467 1.2652 6 1 3.1870 1.6485 -1.1518 7 6 2.0103 -1.2021 0.0005 8 1 1.4776 -2.1331 0.1266 9 7 3.3703 -1.2075 -0.1588 10 6 4.4313 -0.1922 -0.2375 11 6 5.4058 -1.2505 0.3051 12 6 5.4732 -1.3301 1.8316 13 7 6.5312 -0.4425 2.3206 14 6 6.7747 -0.3490 3.6428 15 8 6.1163 -1.0020 4.4302 16 6 7.8373 0.5431 4.1342 17 6 8.1204 0.6793 5.4480 18 16 9.4466 1.8280 5.6096 19 6 9.4920 2.0288 3.8610 20 8 10.3439 2.8415 3.1905 21 7 8.5894 1.2823 3.3145 22 6 4.4120 -2.2309 -0.3329 23 1 -0.4850 -0.8370 0.0711 24 1 4.6560 0.1227 -1.2566 25 1 4.2792 0.6480 0.4400 26 1 6.3871 -1.2366 -0.1693 27 1 4.5167 -1.0224 2.2540 28 1 5.6907 -2.3549 2.1327 29 1 7.0565 0.0779 1.6927 30 1 7.6213 0.1703 6.2594 31 1 10.0081 3.7383 3.0561 32 1 4.2435 -3.1278 0.2633 33 1 4.6309 -2.4542 -1.3772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031914656.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:13 Heat of formation + Delta-G solvation = 42.785078 kcal Electronic energy + Delta-G solvation = -19442.292819 eV Core-core repulsion = 16212.141680 eV Total energy + Delta-G solvation = -3230.151138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63422 -39.29225 -38.51498 -37.37150 -34.48821 -32.36773 -30.41135 -29.10873 -26.73635 -25.35953 -24.92858 -22.65470 -21.70044 -20.18344 -19.77520 -19.00462 -18.10431 -17.43798 -16.77119 -16.32539 -15.76933 -15.49264 -15.09077 -14.66467 -14.61720 -13.99182 -13.60591 -13.41731 -13.12275 -12.63652 -12.37702 -12.25535 -11.68389 -11.63685 -11.09994 -10.76985 -10.40990 -10.38008 -10.21141 -10.01384 -9.98889 -9.30105 -9.20464 -9.14648 -8.84547 -8.81008 -7.11891 -6.29308 -3.19516 0.03054 0.54877 1.06221 1.61197 2.94046 3.24986 3.34026 3.41509 3.45454 3.65770 4.35040 4.61181 4.76802 4.83080 4.87529 5.00716 5.15145 5.38791 5.50770 5.77998 5.89999 6.13382 6.24699 6.27084 6.37634 6.38508 6.52571 6.60841 6.84991 6.95055 7.14024 7.59038 8.19056 8.27042 9.00869 9.53417 10.39469 11.23720 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.004021 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.936696 B = 6962.490818 C = 7191.322918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.025 4.025 3 Si 1.071 2.929 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.304 4.304 8 H 0.083 0.917 9 N -0.628 5.628 10 C 0.102 3.898 11 C -0.148 4.148 12 C 0.145 3.855 13 N -0.704 5.704 14 C 0.588 3.412 15 O -0.531 6.531 16 C 0.029 3.971 17 C -0.165 4.165 18 S 0.101 5.899 19 C 0.257 3.743 20 O -0.431 6.431 21 N -0.459 5.459 22 C 0.133 3.867 23 H 0.261 0.739 24 H 0.047 0.953 25 H 0.051 0.949 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.408 0.592 30 H 0.197 0.803 31 H 0.410 0.590 32 H 0.048 0.952 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.258 5.319 9.140 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.224 4.224 3 Si 0.904 3.096 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.214 1.214 7 C -0.430 4.430 8 H 0.101 0.899 9 N -0.357 5.357 10 C -0.023 4.023 11 C -0.168 4.168 12 C 0.022 3.978 13 N -0.354 5.354 14 C 0.370 3.630 15 O -0.408 6.408 16 C -0.103 4.103 17 C -0.306 4.306 18 S 0.348 5.652 19 C -0.063 4.063 20 O -0.238 6.238 21 N -0.186 5.186 22 C 0.006 3.994 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.099 0.901 27 H 0.103 0.897 28 H 0.089 0.911 29 H 0.244 0.756 30 H 0.214 0.786 31 H 0.269 0.731 32 H 0.066 0.934 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 23.209 6.470 9.856 26.032 hybrid contribution -0.367 -1.427 -0.718 1.639 sum 22.842 5.043 9.137 25.114 Atomic orbital electron populations 1.70916 1.05350 1.29432 1.52121 1.25699 0.96445 1.00918 0.99298 0.83687 0.73752 0.76045 0.76117 1.22325 1.22241 1.21431 1.20134 0.78784 0.95817 1.48268 0.89929 1.46029 1.02322 1.01816 1.85523 1.22833 0.87650 0.93669 0.98176 1.23200 0.98148 1.01229 0.94242 1.21145 0.90675 0.93357 0.92628 1.45891 1.37215 1.45640 1.06700 1.17001 0.81868 0.81170 0.82971 1.90856 1.49188 1.45174 1.55622 1.20061 0.99589 1.01293 0.89334 1.27171 0.99553 1.03026 1.00844 1.85337 1.31051 1.39799 1.08989 1.24997 0.93561 0.97816 0.89941 1.84861 1.38327 1.26234 1.74362 1.66737 1.05758 1.08426 1.37670 1.22285 0.86690 0.93261 0.97211 0.92925 0.93527 0.93138 0.90102 0.89651 0.91131 0.75630 0.78605 0.73121 0.93382 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -30.08 13.70 55.49 0.76 -29.32 16 2 C -0.03 -0.76 5.50 -17.43 -0.10 -0.85 16 3 Si 1.07 27.38 25.13 -169.99 -4.27 23.11 16 4 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 5 H -0.29 -7.22 6.65 56.52 0.38 -6.85 16 6 H -0.29 -6.78 6.13 56.52 0.35 -6.43 16 7 C -0.30 -8.88 11.08 -15.06 -0.17 -9.05 16 8 H 0.08 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.63 -15.45 3.54 -184.63 -0.65 -16.10 16 10 C 0.10 2.13 5.23 -8.39 -0.04 2.09 16 11 C -0.15 -2.48 4.17 -89.97 -0.37 -2.85 16 12 C 0.14 2.46 5.51 -4.04 -0.02 2.44 16 13 N -0.70 -10.65 5.55 -61.46 -0.34 -10.99 16 14 C 0.59 9.25 7.79 -12.63 -0.10 9.15 16 15 O -0.53 -9.90 16.67 5.23 0.09 -9.81 16 16 C 0.03 0.37 6.67 -84.60 -0.56 -0.20 16 17 C -0.16 -1.68 10.84 29.61 0.32 -1.36 16 18 S 0.10 0.76 23.42 -107.50 -2.52 -1.75 16 19 C 0.26 2.36 8.88 51.68 0.46 2.82 16 20 O -0.43 -2.94 13.64 -18.18 -0.25 -3.18 16 21 N -0.46 -5.43 10.01 -11.34 -0.11 -5.54 16 22 C 0.13 2.55 8.25 -8.52 -0.07 2.48 16 23 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 24 H 0.05 0.94 7.73 -51.92 -0.40 0.54 16 25 H 0.05 1.11 4.63 -51.93 -0.24 0.87 16 26 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.09 1.78 7.93 -51.93 -0.41 1.36 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.41 5.43 7.95 -40.82 -0.32 5.11 16 30 H 0.20 1.75 8.01 -52.49 -0.42 1.33 16 31 H 0.41 0.66 9.06 45.56 0.41 1.08 16 32 H 0.05 0.90 8.12 -51.92 -0.42 0.47 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -36.26 300.10 -6.16 -42.42 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -2.73 Total: 1.97 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.66 Total: 4.67 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.35 Total: -61.95 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.16 Total: -12.99 kcal Atomic # 14 Polarization: 27.38 SS G_CDS: -4.27 Total: 23.11 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -2.52 Total: -1.75 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.26 -6.16 -42.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031914656.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.206 kcal (2) G-P(sol) polarization free energy of solvation -36.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds