Wall clock time and date at job start Tue Mar 31 2020 05:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99569 * 2 1 4 4 H 1.48502 * 109.47138 * 270.00024 * 3 2 1 5 5 H 1.48501 * 109.47315 * 29.99845 * 3 2 1 6 6 H 1.48494 * 109.47204 * 150.00135 * 3 2 1 7 7 C 1.38811 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99896 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49525 * 359.97438 * 9 7 2 11 11 C 1.53943 * 86.11837 * 155.36143 * 10 9 7 12 12 C 1.47576 * 134.49213 * 180.02562 * 9 7 2 13 13 H 1.08993 * 113.87608 * 90.32096 * 12 9 7 14 14 C 1.53006 * 113.76730 * 318.93890 * 12 9 7 15 15 N 1.46502 * 109.47289 * 78.50649 * 14 12 9 16 16 C 1.34772 * 119.99772 * 180.02562 * 15 14 12 17 17 O 1.21643 * 120.00669 * 359.97438 * 16 15 14 18 18 C 1.47182 * 119.99586 * 180.02562 * 16 15 14 19 19 C 1.35090 * 122.48705 * 179.97438 * 18 16 15 20 20 S 1.76195 * 108.22071 * 179.75024 * 19 18 16 21 21 C 1.76051 * 90.15445 * 0.28996 * 20 19 18 22 22 O 1.35495 * 125.17881 * 179.97438 * 21 20 19 23 23 N 1.29249 * 109.64593 * 359.70621 * 21 20 19 24 24 H 0.97001 * 120.00549 * 0.02562 * 1 2 3 25 25 H 1.09011 * 113.76876 * 41.05787 * 10 9 7 26 26 H 1.09002 * 113.87697 * 269.67719 * 10 9 7 27 27 H 1.09002 * 113.73988 * 269.26377 * 11 10 9 28 28 H 1.09003 * 113.83945 * 137.96609 * 11 10 9 29 29 H 1.08998 * 109.47144 * 318.50605 * 14 12 9 30 30 H 1.09000 * 109.46938 * 198.50916 * 14 12 9 31 31 H 0.96998 * 119.99281 * 359.97438 * 15 14 12 32 32 H 1.07999 * 125.89136 * 359.97438 * 19 18 16 33 33 H 0.96696 * 114.00010 * 269.69252 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0005 10 6 -0.1031 -2.7575 0.0005 11 6 0.3473 -4.0830 -0.6398 12 6 1.7203 -3.8101 0.0015 13 1 1.8321 -4.2362 0.9984 14 6 2.9033 -4.1223 -0.9173 15 7 4.1501 -3.7188 -0.2624 16 6 5.3295 -3.8990 -0.8892 17 8 5.3589 -4.3972 -1.9986 18 6 6.5821 -3.4941 -0.2310 19 6 7.7912 -3.6519 -0.8125 20 16 9.0185 -3.0393 0.2934 21 6 7.7673 -2.6277 1.4615 22 8 7.9861 -2.0613 2.6728 23 7 6.6077 -2.9429 0.9855 24 1 -0.4851 0.8400 -0.0004 25 1 -0.7168 -2.1391 -0.6547 26 1 -0.5288 -2.8733 0.9973 27 1 0.3594 -4.0621 -1.7295 28 1 -0.1580 -4.9608 -0.2371 29 1 2.7909 -3.5750 -1.8532 30 1 2.9308 -5.1923 -1.1232 31 1 4.1266 -3.3212 0.6221 32 1 7.9738 -4.0766 -1.7885 33 1 8.1189 -2.6994 3.3871 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038620361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:21 Heat of formation + Delta-G solvation = 33.833285 kcal Electronic energy + Delta-G solvation = -19712.224549 eV Core-core repulsion = 16481.685232 eV Total energy + Delta-G solvation = -3230.539317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.41305 -38.94521 -37.94058 -37.15304 -34.11754 -32.13997 -30.21308 -28.25195 -27.77012 -25.24893 -23.33110 -22.85590 -21.57591 -19.96180 -19.56600 -19.00369 -18.01671 -16.83192 -16.42829 -16.10375 -15.36492 -15.27135 -14.74377 -14.51160 -14.23357 -13.75488 -13.45126 -13.22182 -12.82281 -12.21129 -12.04761 -11.85667 -11.40030 -11.09290 -10.98491 -10.71776 -10.52192 -10.19893 -9.96496 -9.82300 -9.76556 -9.71598 -9.37534 -9.09914 -8.76150 -8.57533 -6.85957 -5.72628 -3.04865 0.21551 0.72280 1.23667 1.83093 3.16904 3.41648 3.42935 3.47791 3.49386 3.63263 4.47026 4.57047 4.99514 5.06182 5.18999 5.42225 5.56278 5.64304 5.74364 5.93907 6.07600 6.31426 6.41751 6.63848 6.70252 6.79875 6.84438 7.17792 7.28433 7.43380 7.63284 7.87264 8.02722 8.43214 9.09122 9.75327 10.62503 11.44088 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.015741 B = 0.005394 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.328732 B = 5189.766346 C = 6323.829863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.217 4.217 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.125 3.875 13 H 0.050 0.950 14 C 0.121 3.879 15 N -0.691 5.691 16 C 0.586 3.414 17 O -0.544 6.544 18 C 0.032 3.968 19 C -0.168 4.168 20 S 0.091 5.909 21 C 0.259 3.741 22 O -0.429 6.429 23 N -0.454 5.454 24 H 0.252 0.748 25 H 0.074 0.926 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.195 0.805 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.269 -10.033 3.145 18.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.345 4.345 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.033 3.967 11 C -0.194 4.194 12 C 0.017 3.983 13 H 0.068 0.932 14 C -0.003 4.003 15 N -0.340 5.340 16 C 0.368 3.632 17 O -0.422 6.422 18 C -0.099 4.099 19 C -0.309 4.309 20 S 0.338 5.662 21 C -0.061 4.061 22 O -0.235 6.235 23 N -0.180 5.180 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.044 0.956 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.249 0.751 32 H 0.213 0.787 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 15.851 -9.262 2.455 18.522 hybrid contribution -0.135 0.707 0.609 0.943 sum 15.716 -8.555 3.064 18.154 Atomic orbital electron populations 1.69818 1.04925 1.25190 1.56862 1.24734 0.95596 0.97355 1.02619 0.86213 0.78742 0.83811 0.77632 1.21624 1.21655 1.20665 1.18971 0.90211 0.81901 1.43390 0.90332 1.46088 1.02278 0.98541 1.85858 1.22197 0.87943 0.89604 0.96910 1.23779 0.96029 0.98981 1.00581 1.22517 0.92238 0.87818 0.95680 0.93242 1.21876 0.82039 0.98895 0.97522 1.45843 1.05435 1.61037 1.21652 1.17025 0.82287 0.79064 0.84801 1.90799 1.86886 1.45617 1.18921 1.20133 0.95475 1.03605 0.90712 1.27114 0.93649 1.04684 1.05445 1.85230 1.12194 1.56559 1.12228 1.25004 0.88562 0.99823 0.92741 1.84899 1.90606 1.34047 1.13971 1.66770 1.25359 1.13077 1.12840 0.93750 0.90796 0.95586 0.90462 0.92775 0.90615 0.91807 0.75112 0.78748 0.73391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.49 11.38 55.49 0.63 -26.86 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 4 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.22 -6.04 10.51 -15.06 -0.16 -6.19 16 8 H 0.08 2.16 7.80 -52.49 -0.41 1.75 16 9 N -0.60 -14.99 3.57 -170.74 -0.61 -15.60 16 10 C 0.16 3.68 7.51 -2.98 -0.02 3.66 16 11 C -0.15 -2.84 7.86 -25.79 -0.20 -3.04 16 12 C 0.13 2.46 4.33 -66.85 -0.29 2.17 16 13 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 14 C 0.12 2.24 5.54 -4.04 -0.02 2.22 16 15 N -0.69 -12.62 5.52 -61.46 -0.34 -12.96 16 16 C 0.59 10.50 7.79 -12.63 -0.10 10.40 16 17 O -0.54 -10.73 16.67 5.24 0.09 -10.64 16 18 C 0.03 0.50 6.67 -84.59 -0.56 -0.07 16 19 C -0.17 -2.03 10.84 29.61 0.32 -1.71 16 20 S 0.09 0.87 23.42 -107.50 -2.52 -1.65 16 21 C 0.26 3.11 8.88 51.68 0.46 3.57 16 22 O -0.43 -4.18 13.64 -18.18 -0.25 -4.43 16 23 N -0.45 -6.85 10.01 -11.34 -0.11 -6.96 16 24 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.07 1.90 7.15 -51.92 -0.37 1.53 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.41 7.66 7.95 -40.82 -0.32 7.34 16 32 H 0.20 2.03 8.01 -52.49 -0.42 1.61 16 33 H 0.41 1.57 9.06 45.56 0.41 1.99 16 LS Contribution 307.62 15.07 4.64 4.64 Total: -1.00 -34.31 307.62 -6.95 -41.26 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.78 Total: 4.62 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: -0.67 Total: 10.72 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.43 Total: -62.38 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.16 Total: -15.07 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.52 Total: -1.65 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.31 -6.95 -41.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038620361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.098 kcal (2) G-P(sol) polarization free energy of solvation -34.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds