Wall clock time and date at job start Tue Mar 31 2020 05:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81395 * 109.47328 * 2 1 4 4 O 1.42111 * 110.54097 * 68.37625 * 3 2 1 5 5 O 1.42100 * 110.54521 * 291.62991 * 3 2 1 6 6 C 1.76200 * 104.45319 * 180.02562 * 3 2 1 7 7 C 1.38362 * 119.95779 * 270.30271 * 6 3 2 8 8 C 1.38309 * 120.16352 * 180.25407 * 7 6 3 9 9 C 1.38083 * 120.08139 * 359.44253 * 8 7 6 10 10 C 1.39008 * 119.91959 * 0.27876 * 9 8 7 11 11 N 1.39535 * 120.08373 * 179.97438 * 10 9 8 12 12 C 1.34773 * 119.99879 * 33.38960 * 11 10 9 13 13 O 1.21742 * 120.00080 * 5.27877 * 12 11 10 14 14 C 1.46175 * 119.99906 * 185.27838 * 12 11 10 15 15 H 1.07998 * 119.99632 * 0.02562 * 14 12 11 16 16 C 1.40124 * 119.99671 * 180.02562 * 14 12 11 17 17 N 1.30633 * 120.00207 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99631 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46964 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47046 * 119.99467 * 18 16 14 21 21 H 1.48496 * 109.47047 * 240.00158 * 18 16 14 22 22 C 1.38033 * 119.95815 * 89.99978 * 6 3 2 23 23 H 1.09000 * 109.47091 * 59.99761 * 1 2 3 24 24 H 1.09001 * 109.47265 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46980 * 299.99488 * 1 2 3 26 26 H 1.09003 * 109.46980 * 240.00512 * 2 1 3 27 27 H 1.09000 * 109.47580 * 120.00442 * 2 1 3 28 28 H 1.07997 * 119.91823 * 359.97438 * 7 6 3 29 29 H 1.08001 * 119.95298 * 179.72412 * 8 7 6 30 30 H 1.08003 * 120.03582 * 180.25486 * 9 8 7 31 31 H 0.97001 * 120.00038 * 213.39565 * 11 10 9 32 32 H 0.96999 * 119.99523 * 180.02562 * 17 16 14 33 33 H 1.07998 * 120.04142 * 0.04683 * 22 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2371 5 8 1.8385 2.3439 -1.2369 6 6 3.8899 1.5560 -0.0008 7 6 4.5781 1.4891 1.1977 8 6 5.9564 1.3733 1.2021 9 6 6.6496 1.3125 0.0094 10 6 5.9612 1.3737 -1.1966 11 7 6.6583 1.3131 -2.4038 12 6 7.7786 0.5699 -2.4984 13 8 8.1297 -0.1240 -1.5617 14 6 8.5722 0.5970 -3.7257 15 1 8.2609 1.2129 -4.5565 16 6 9.7367 -0.1761 -3.8242 17 7 10.1134 -0.9206 -2.8191 18 14 10.7504 -0.1420 -5.3929 19 1 10.1138 0.7733 -6.3738 20 1 12.1218 0.3374 -5.0856 21 1 10.8210 -1.5099 -5.9664 22 6 4.5761 1.4959 -1.1970 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 4.0382 1.5318 2.1320 29 1 6.4905 1.3258 2.1395 30 1 7.7255 1.2180 0.0137 31 1 6.3367 1.8059 -3.1749 32 1 10.9197 -1.4555 -2.8872 33 1 4.0378 1.5440 -2.1320 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116665794.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:58 Heat of formation + Delta-G solvation = -86.020023 kcal Electronic energy + Delta-G solvation = -19557.268201 eV Core-core repulsion = 16289.238904 eV Total energy + Delta-G solvation = -3268.029298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.37478 -37.11958 -37.00799 -35.87587 -33.63253 -33.33989 -32.57570 -30.86421 -29.21180 -26.35925 -24.36420 -22.89363 -22.27378 -20.31058 -18.70288 -17.75619 -17.49488 -16.37430 -16.06573 -15.76899 -15.49851 -15.09589 -14.72493 -14.28502 -14.04402 -13.53581 -13.46834 -12.96136 -12.69699 -12.68839 -12.22748 -12.03123 -11.96149 -11.86384 -11.76897 -11.49311 -11.23599 -11.18309 -10.80045 -10.72118 -10.40448 -10.38386 -9.59601 -9.03315 -8.90448 -7.90893 -7.32406 -6.45779 -4.93165 0.10044 1.25429 1.73345 2.95838 3.00043 3.09068 3.13474 3.69683 3.90423 4.06021 4.11982 4.38886 4.44254 4.45786 4.69717 4.96694 5.15978 5.32494 5.35329 5.49808 5.50982 5.65901 5.67529 5.81006 5.99330 6.12672 6.32162 6.76949 6.81440 7.09000 7.19784 7.59215 7.88360 8.04050 8.74830 9.06818 10.24593 10.44741 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.033012 B = 0.003861 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.966225 B = 7250.012983 C = 7588.521479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.611 4.611 3 S 2.501 3.499 4 O -0.943 6.943 5 O -0.941 6.941 6 C -0.638 4.638 7 C -0.072 4.072 8 C -0.120 4.120 9 C -0.075 4.075 10 C 0.177 3.823 11 N -0.700 5.700 12 C 0.541 3.459 13 O -0.562 6.562 14 C -0.536 4.536 15 H 0.074 0.926 16 C 0.086 3.914 17 N -0.758 5.758 18 Si 0.914 3.086 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.085 4.085 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.146 0.854 31 H 0.397 0.603 32 H 0.272 0.728 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.425 1.560 4.414 14.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.741 4.741 3 S 2.682 3.318 4 O -0.940 6.940 5 O -0.939 6.939 6 C -0.727 4.727 7 C -0.093 4.093 8 C -0.139 4.139 9 C -0.097 4.097 10 C 0.076 3.924 11 N -0.343 5.343 12 C 0.348 3.652 13 O -0.444 6.444 14 C -0.572 4.572 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.386 5.386 18 Si 0.738 3.262 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.107 4.107 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.150 0.850 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.230 0.770 32 H 0.083 0.917 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.403 1.663 5.073 14.427 hybrid contribution 1.098 -0.579 -1.168 1.704 sum -12.305 1.084 3.905 12.955 Atomic orbital electron populations 1.21550 0.90607 1.05035 1.03505 1.30214 1.06685 1.24837 1.12323 1.05192 0.74677 0.77402 0.74540 1.93544 1.83840 1.72038 1.44614 1.93552 1.83793 1.71999 1.44527 1.29968 1.24146 1.19371 0.99171 1.20664 0.94945 0.97806 0.95839 1.21128 0.93929 1.00790 0.98099 1.21722 1.02001 0.95065 0.90865 1.18020 0.90311 0.95811 0.88210 1.44224 1.28717 1.51408 1.09950 1.18439 0.78391 0.78600 0.89756 1.90634 1.69742 1.43151 1.40866 1.20908 1.08207 1.28377 0.99702 0.90755 1.25760 0.97087 0.93377 0.97320 1.69985 1.20232 1.18677 1.29698 0.86197 0.79586 0.78833 0.81548 1.18551 1.19919 1.19941 1.20617 0.93102 1.00318 0.96710 0.90860 0.89941 0.90914 0.84537 0.84639 0.85041 0.85527 0.83622 0.76961 0.91673 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.92 37.16 0.37 -0.75 16 2 C -0.61 -5.34 6.70 37.16 0.25 -5.10 16 3 S 2.50 31.46 5.15 -107.50 -0.55 30.91 16 4 O -0.94 -13.86 17.13 -57.54 -0.99 -14.84 16 5 O -0.94 -14.39 17.12 -57.54 -0.98 -15.37 16 6 C -0.64 -9.71 5.65 -39.61 -0.22 -9.93 16 7 C -0.07 -1.09 9.47 -39.51 -0.37 -1.46 16 8 C -0.12 -1.98 10.04 -39.61 -0.40 -2.37 16 9 C -0.08 -1.52 8.65 -39.35 -0.34 -1.86 16 10 C 0.18 3.57 6.28 -83.77 -0.53 3.05 16 11 N -0.70 -15.19 5.32 -11.19 -0.06 -15.25 16 12 C 0.54 14.43 7.47 -13.08 -0.10 14.33 16 13 O -0.56 -16.77 12.70 5.15 0.07 -16.70 16 14 C -0.54 -14.17 9.54 -35.69 -0.34 -14.51 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 17 N -0.76 -21.31 11.82 55.55 0.66 -20.65 16 18 Si 0.91 18.95 29.56 -169.99 -5.02 13.92 16 19 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.08 -1.45 9.39 -39.36 -0.37 -1.82 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.14 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.14 0.96 8.14 -51.92 -0.42 0.54 16 28 H 0.13 1.62 7.57 -52.49 -0.40 1.23 16 29 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.15 3.31 6.42 -52.48 -0.34 2.97 16 31 H 0.40 7.38 8.79 -40.82 -0.36 7.02 16 32 H 0.27 6.91 8.29 -40.82 -0.34 6.57 16 33 H 0.14 2.06 7.56 -52.49 -0.40 1.66 16 LS Contribution 304.00 15.07 4.58 4.58 Total: -1.00 -35.31 304.00 -8.03 -43.33 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -3.57 Total: 8.34 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.15 Total: -18.27 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.60 Total: -35.89 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -1.91 Total: -46.92 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.92 kcal Atomic # 16 Polarization: 31.46 SS G_CDS: -0.55 Total: 30.91 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.31 -8.03 -43.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116665794.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.685 kcal (2) G-P(sol) polarization free energy of solvation -35.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds