Wall clock time and date at job start Tue Mar 31 2020 06:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47141 * 2 1 4 4 H 1.09003 * 109.47424 * 54.99746 * 3 2 1 5 5 C 1.50696 * 109.46983 * 175.00152 * 3 2 1 6 6 H 1.08002 * 120.00474 * 120.00423 * 5 3 2 7 7 C 1.37881 * 120.00111 * 299.99831 * 5 3 2 8 8 N 1.31512 * 120.00286 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99845 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.46938 * 89.99657 * 9 7 5 11 11 H 1.48499 * 109.47363 * 209.99840 * 9 7 5 12 12 H 1.48506 * 109.47311 * 329.99979 * 9 7 5 13 13 O 1.45206 * 109.47395 * 295.00221 * 3 2 1 14 14 C 1.34668 * 117.00093 * 89.99698 * 13 3 2 15 15 O 1.21428 * 120.00259 * 0.02562 * 14 13 3 16 16 C 1.48050 * 119.99783 * 180.02562 * 14 13 3 17 17 C 1.39827 * 120.92417 * 6.10862 * 16 14 13 18 18 C 1.38297 * 118.98729 * 180.22999 * 17 16 14 19 19 Cl 1.73598 * 119.56843 * 179.76709 * 18 17 16 20 20 N 1.31919 * 120.86442 * 359.79431 * 18 17 16 21 21 C 1.31808 * 122.04422 * 359.97342 * 20 18 17 22 22 C 1.38139 * 120.92340 * 0.02562 * 21 20 18 23 23 C 1.50692 * 120.49064 * 179.97438 * 22 21 20 24 24 H 1.09001 * 109.47156 * 299.99918 * 1 2 3 25 25 H 1.09009 * 109.47053 * 59.99807 * 1 2 3 26 26 H 1.08997 * 109.47151 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46458 * 240.00090 * 2 1 3 28 28 H 1.08995 * 109.46918 * 120.00103 * 2 1 3 29 29 H 0.96999 * 119.99703 * 180.02562 * 8 7 5 30 30 H 1.07997 * 120.50376 * 359.97438 * 17 16 14 31 31 H 1.07998 * 119.54313 * 179.97438 * 21 20 18 32 32 H 1.09005 * 109.47150 * 96.28044 * 23 22 21 33 33 H 1.08999 * 109.47177 * 336.28465 * 23 22 21 34 34 H 1.09004 * 109.47326 * 216.28043 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4540 0.8803 1.3363 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2346 3.8751 12 1 1.7877 0.8072 2.6387 13 8 1.6559 2.0917 -1.2407 14 6 0.4689 2.7275 -1.2560 15 8 -0.2262 2.7399 -0.2604 16 6 0.0113 3.4115 -2.4867 17 6 0.7333 3.3039 -3.6794 18 6 0.2720 3.9635 -4.8039 19 17 1.1598 3.8452 -6.2910 20 7 -0.8337 4.6819 -4.7613 21 6 -1.5455 4.8051 -3.6588 22 6 -1.1575 4.1799 -2.4897 23 6 -1.9784 4.3279 -1.2347 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.8770 0.4818 2.1129 30 1 1.6396 2.7180 -3.7205 31 1 -2.4443 5.4038 -3.6694 32 1 -2.6489 3.4741 -1.1364 33 1 -2.5642 5.2454 -1.2898 34 1 -1.3159 4.3710 -0.3701 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122898263.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:58 Heat of formation + Delta-G solvation = -57.398547 kcal Electronic energy + Delta-G solvation = -20083.764155 eV Core-core repulsion = 16814.932271 eV Total energy + Delta-G solvation = -3268.831884 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90449 -39.53050 -36.86199 -36.30664 -33.84547 -33.49095 -32.32489 -31.92834 -28.09230 -27.41360 -25.21354 -23.13646 -22.56291 -21.45169 -20.12602 -18.28561 -17.22300 -16.74076 -16.42987 -15.81249 -15.37154 -15.28943 -14.79361 -14.40670 -14.00035 -13.60012 -13.18945 -12.97591 -12.68693 -12.53957 -12.09143 -12.01317 -11.82672 -11.66356 -11.57801 -11.40626 -11.29517 -10.85000 -10.42189 -10.13985 -10.07656 -9.82672 -9.71384 -9.51746 -9.19077 -8.98114 -8.73902 -6.30583 -4.34040 0.42134 0.69690 1.63911 2.71984 3.07661 3.11951 3.25021 3.25758 3.51065 4.18499 4.19386 4.51449 4.58374 4.78323 4.89299 4.98489 5.32744 5.47043 5.54988 5.63676 5.70315 5.78032 5.83477 5.88104 6.13748 6.22542 6.35224 6.46913 6.55460 6.60797 6.91794 7.19853 7.38358 7.40845 8.04275 8.40014 8.75807 9.25298 10.81215 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021283 B = 0.005039 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.267317 B = 5555.539595 C = 6386.143419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.199 3.801 4 H 0.049 0.951 5 C -0.529 4.529 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.885 5.885 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.260 1.260 13 O -0.331 6.331 14 C 0.499 3.501 15 O -0.496 6.496 16 C -0.062 4.062 17 C -0.092 4.092 18 C 0.155 3.845 19 Cl -0.026 7.026 20 N -0.458 5.458 21 C 0.107 3.893 22 C -0.073 4.073 23 C -0.120 4.120 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.270 0.730 30 H 0.165 0.835 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 5.026 -8.736 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C 0.146 3.854 4 H 0.067 0.933 5 C -0.566 4.566 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.521 5.521 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.185 1.185 13 O -0.246 6.246 14 C 0.342 3.658 15 O -0.386 6.386 16 C -0.071 4.071 17 C -0.113 4.113 18 C -0.009 4.009 19 Cl 0.003 6.997 20 N -0.169 5.169 21 C -0.051 4.051 22 C -0.076 4.076 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -13.652 5.342 -9.189 17.301 hybrid contribution -0.015 -0.990 1.324 1.653 sum -13.667 4.352 -7.865 16.358 Atomic orbital electron populations 1.21907 0.96954 1.00205 1.01681 1.22384 0.94377 0.99461 1.02456 1.21073 0.96546 0.88091 0.79711 0.93313 1.20760 0.87497 1.40296 1.08064 0.89377 1.24721 0.94947 0.95190 0.97324 1.69827 1.08496 1.43985 1.29812 0.87012 0.80979 0.80177 0.81355 1.19860 1.21585 1.18493 1.86558 1.33172 1.61948 1.42934 1.20707 0.81213 0.77104 0.86737 1.90747 1.55342 1.57596 1.34903 1.19593 0.95611 0.99210 0.92729 1.22286 1.00873 0.97864 0.90306 1.21487 0.93061 0.97623 0.88698 1.98413 1.72041 1.96610 1.32664 1.66842 1.04998 1.15234 1.29855 1.22574 0.98665 0.97880 0.85939 1.21231 0.93943 0.94215 0.98181 1.21057 0.99703 1.02193 0.94667 0.92427 0.93722 0.93789 0.91077 0.91585 0.91945 0.81790 0.81035 0.89908 0.91436 0.88161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.56 37.16 0.32 -2.46 16 2 C -0.15 -3.20 5.15 -26.73 -0.14 -3.34 16 3 C 0.20 4.72 1.84 -27.89 -0.05 4.67 16 4 H 0.05 1.21 6.22 -51.93 -0.32 0.89 16 5 C -0.53 -14.52 9.48 -34.44 -0.33 -14.85 16 6 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 7 C 0.08 2.27 5.45 -17.82 -0.10 2.18 16 8 N -0.88 -25.90 13.96 55.43 0.77 -25.13 16 9 Si 0.88 20.80 24.41 -169.99 -4.15 16.65 16 10 H -0.27 -6.21 6.83 56.52 0.39 -5.82 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.01 6.53 56.52 0.37 -5.64 16 13 O -0.33 -7.05 9.18 -40.40 -0.37 -7.42 16 14 C 0.50 9.19 6.31 34.76 0.22 9.41 16 15 O -0.50 -9.48 10.71 -19.21 -0.21 -9.68 16 16 C -0.06 -0.94 5.91 -104.67 -0.62 -1.56 16 17 C -0.09 -1.31 9.47 -38.97 -0.37 -1.68 16 18 C 0.15 2.07 7.27 -17.49 -0.13 1.95 16 19 Cl -0.03 -0.31 29.10 -51.86 -1.51 -1.82 16 20 N -0.46 -5.96 10.31 -10.41 -0.11 -6.06 16 21 C 0.11 1.18 10.83 -17.60 -0.19 0.99 16 22 C -0.07 -0.91 5.93 -104.05 -0.62 -1.53 16 23 C -0.12 -1.31 8.85 36.00 0.32 -0.99 16 24 H 0.06 1.09 7.79 -51.93 -0.40 0.68 16 25 H 0.04 0.80 6.06 -51.92 -0.31 0.48 16 26 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.07 1.47 3.21 -51.93 -0.17 1.31 16 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.16 2.29 7.73 -52.49 -0.41 1.88 16 31 H 0.17 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 34 H 0.10 1.34 5.93 -51.93 -0.31 1.04 16 LS Contribution 297.03 15.07 4.48 4.48 Total: -1.00 -29.43 297.03 -6.41 -35.84 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -3.64 Total: 0.36 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.68 Total: -7.22 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.67 Total: -31.19 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.58 Total: -17.10 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.15 Total: 16.65 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.51 Total: -1.82 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.43 -6.41 -35.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122898263.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.560 kcal (2) G-P(sol) polarization free energy of solvation -29.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds