Wall clock time and date at job start Tue Mar 31 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86799 * 120.00111 * 2 1 4 4 H 1.48505 * 109.46888 * 270.00376 * 3 2 1 5 5 H 1.48500 * 109.46879 * 30.00038 * 3 2 1 6 6 H 1.48503 * 109.47034 * 150.00222 * 3 2 1 7 7 C 1.40057 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99688 * 186.32607 * 7 2 1 9 9 C 1.41269 * 120.00418 * 6.33050 * 7 2 1 10 10 C 1.40717 * 120.16106 * 173.83029 * 9 7 2 11 11 N 1.31901 * 119.93161 * 180.02562 * 10 9 7 12 12 C 1.32151 * 120.27300 * 359.97438 * 11 10 9 13 13 C 1.39929 * 120.32167 * 0.02562 * 12 11 10 14 14 N 1.38825 * 119.96761 * 179.97438 * 13 12 11 15 15 C 1.46494 * 120.00567 * 0.02562 * 14 13 12 16 16 H 1.09010 * 109.64217 * 34.57023 * 15 14 13 17 17 C 1.53880 * 109.54032 * 274.21119 * 15 14 13 18 18 C 1.55050 * 106.62209 * 193.02905 * 17 15 14 19 19 S 1.83556 * 102.55861 * 42.48355 * 18 17 15 20 20 O 1.42091 * 109.37561 * 223.35170 * 19 18 17 21 21 O 1.42102 * 109.41114 * 90.08823 * 19 18 17 22 22 C 1.54161 * 109.65129 * 154.99678 * 15 14 13 23 23 N 1.32265 * 120.05837 * 0.25731 * 13 12 11 24 24 H 0.96996 * 120.00198 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.03607 * 0.03532 * 10 9 7 26 26 H 1.08001 * 119.84309 * 180.02562 * 12 11 10 27 27 H 0.97001 * 119.99998 * 180.02562 * 14 13 12 28 28 H 1.09000 * 110.02560 * 312.31747 * 17 15 14 29 29 H 1.08992 * 110.02617 * 73.73694 * 17 15 14 30 30 H 1.09004 * 110.78723 * 160.70492 * 18 17 15 31 31 H 1.09004 * 110.78546 * 284.16165 * 18 17 15 32 32 H 1.09003 * 110.32230 * 266.54039 * 22 15 14 33 33 H 1.09009 * 110.31797 * 28.63056 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.4887 2.0464 -1.4001 5 1 1.4387 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0075 -1.2130 -0.0005 8 1 3.0826 -1.2159 0.1025 9 6 1.3077 -2.4326 -0.1360 10 6 2.0142 -3.6424 -0.2673 11 7 1.3562 -4.7785 -0.3940 12 6 0.0347 -4.7861 -0.3977 13 6 -0.6790 -3.5896 -0.2678 14 7 -2.0671 -3.6061 -0.2732 15 6 -2.7842 -4.8757 -0.4142 16 1 -2.2278 -5.6683 0.0864 17 6 -2.9395 -5.2161 -1.9068 18 6 -3.9755 -6.3665 -1.9939 19 16 -5.2595 -5.8391 -0.7929 20 8 -5.6622 -6.9560 -0.0124 21 8 -6.2354 -5.0509 -1.4607 22 6 -4.1869 -4.7514 0.2132 23 7 -0.0323 -2.4423 -0.1456 24 1 -0.4850 0.8400 0.0004 25 1 3.0943 -3.6407 -0.2642 26 1 -0.4970 -5.7204 -0.5014 27 1 -2.5624 -2.7769 -0.1836 28 1 -3.3023 -4.3450 -2.4525 29 1 -1.9838 -5.5426 -2.3166 30 1 -4.3920 -6.4367 -2.9987 31 1 -3.5280 -7.3136 -1.6923 32 1 -4.1696 -5.0901 1.2491 33 1 -4.5359 -3.7202 0.1586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155054637.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:23 Heat of formation + Delta-G solvation = -46.029448 kcal Electronic energy + Delta-G solvation = -19811.924560 eV Core-core repulsion = 16577.922135 eV Total energy + Delta-G solvation = -3234.002425 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.89075 -38.60259 -38.08929 -37.07475 -35.84091 -34.77847 -33.14840 -31.31557 -29.75029 -27.75718 -25.81312 -24.25198 -23.41868 -21.95276 -19.82388 -19.40504 -18.60689 -17.70466 -17.63230 -17.02525 -16.76275 -16.55570 -16.42511 -15.75054 -15.30759 -15.08105 -14.80752 -14.54746 -13.68371 -13.50232 -13.31246 -13.25402 -13.16391 -13.11111 -12.97493 -12.89670 -12.55333 -12.22972 -12.02175 -11.88835 -11.68482 -11.37455 -11.34681 -11.26056 -10.25823 -9.31938 -8.53279 -8.33482 -6.63231 -0.93062 0.83749 1.26013 1.43042 1.54317 1.56002 1.57265 2.21069 2.45552 2.60969 2.83350 3.10218 3.33652 3.64995 3.71844 3.91488 3.96085 4.04310 4.23228 4.41937 4.52901 4.61667 4.67410 4.83513 4.89382 5.00680 5.11292 5.15675 5.22787 5.71728 6.09715 6.20836 6.64334 6.67140 6.97200 7.47826 8.07933 8.34264 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029313 B = 0.004137 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.964194 B = 6766.009345 C = 7430.694721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.026 3.974 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.253 1.253 7 C -0.443 4.443 8 H 0.099 0.901 9 C 0.217 3.783 10 C -0.135 4.135 11 N -0.416 5.416 12 C -0.173 4.173 13 C 0.366 3.634 14 N -0.712 5.712 15 C 0.163 3.837 16 H 0.108 0.892 17 C -0.143 4.143 18 C -0.556 4.556 19 S 2.416 3.584 20 O -0.970 6.970 21 O -0.972 6.972 22 C -0.597 4.597 23 N -0.539 5.539 24 H 0.282 0.718 25 H 0.139 0.861 26 H 0.157 0.843 27 H 0.400 0.600 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.160 0.840 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -5.868 -2.384 10.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.363 5.363 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.176 1.176 7 C -0.475 4.475 8 H 0.117 0.883 9 C 0.089 3.911 10 C -0.303 4.303 11 N -0.127 5.127 12 C -0.336 4.336 13 C 0.121 3.879 14 N -0.347 5.347 15 C 0.056 3.944 16 H 0.126 0.874 17 C -0.183 4.183 18 C -0.689 4.689 19 S 2.602 3.398 20 O -0.967 6.967 21 O -0.970 6.970 22 C -0.727 4.727 23 N -0.267 5.267 24 H 0.093 0.907 25 H 0.157 0.843 26 H 0.174 0.826 27 H 0.236 0.764 28 H 0.109 0.891 29 H 0.117 0.883 30 H 0.178 0.822 31 H 0.182 0.818 32 H 0.177 0.823 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -9.349 -6.193 -2.287 11.445 hybrid contribution 0.993 1.307 0.066 1.642 sum -8.357 -4.886 -2.220 9.932 Atomic orbital electron populations 1.70163 1.08967 1.29553 1.27658 1.27031 0.95755 1.04601 0.92375 0.85076 0.79120 0.75320 0.79461 1.18855 1.19334 1.17608 1.20053 0.95728 0.90072 1.41677 0.88266 1.19484 0.88366 0.94236 0.88999 1.23027 0.99620 0.89370 1.18308 1.67521 1.09255 1.29930 1.06043 1.22511 0.90454 0.97068 1.23581 1.19823 0.86748 0.91591 0.89782 1.44238 1.00971 1.08577 1.80953 1.21377 0.90272 0.87810 0.94945 0.87390 1.22806 1.01429 0.97567 0.96515 1.30485 1.13201 1.08078 1.17090 1.08188 0.77840 0.75779 0.78021 1.93570 1.82074 1.50965 1.70116 1.93578 1.58028 1.70995 1.74360 1.30824 1.08666 1.17866 1.15322 1.69013 1.08613 1.24018 1.25012 0.90698 0.84329 0.82612 0.76382 0.89147 0.88258 0.82187 0.81832 0.82338 0.83274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.26 11.51 21.84 0.25 -37.01 16 2 C 0.03 1.24 5.49 85.30 0.47 1.71 16 3 Si 0.99 35.56 29.56 68.60 2.03 37.59 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 6 H -0.25 -8.71 7.11 99.48 0.71 -8.00 16 7 C -0.44 -22.77 9.15 23.46 0.21 -22.56 16 8 H 0.10 4.70 7.85 -2.91 -0.02 4.68 16 9 C 0.22 11.67 6.54 40.16 0.26 11.93 16 10 C -0.13 -6.82 10.97 85.29 0.94 -5.89 16 11 N -0.42 -20.05 10.47 -192.23 -2.01 -22.06 16 12 C -0.17 -7.48 10.32 85.05 0.88 -6.60 16 13 C 0.37 16.22 7.65 133.36 1.02 17.24 16 14 N -0.71 -23.63 5.25 -320.84 -1.69 -25.31 16 15 C 0.16 3.65 2.56 45.68 0.12 3.77 16 16 H 0.11 2.28 6.44 -2.38 -0.02 2.26 16 17 C -0.14 -2.68 6.05 31.59 0.19 -2.49 16 18 C -0.56 -6.80 7.32 72.68 0.53 -6.27 16 19 S 2.42 41.46 6.12 -56.49 -0.35 41.11 16 20 O -0.97 -22.87 18.15 -127.49 -2.31 -25.18 16 21 O -0.97 -24.02 18.15 -127.49 -2.31 -26.34 16 22 C -0.60 -10.16 6.91 72.38 0.50 -9.66 16 23 N -0.54 -28.30 8.10 -186.00 -1.51 -29.81 16 24 H 0.28 12.73 8.29 -92.71 -0.77 11.96 16 25 H 0.14 6.47 8.06 -2.91 -0.02 6.45 16 26 H 0.16 5.41 6.03 -2.91 -0.02 5.39 16 27 H 0.40 13.30 8.49 -92.71 -0.79 12.52 16 28 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.10 2.06 7.90 -2.39 -0.02 2.04 16 30 H 0.16 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.16 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.15 2.42 7.77 -2.38 -0.02 2.40 16 Total: -1.00 -74.17 294.99 -2.41 -76.58 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.37 Total: 29.23 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 5.12 Total: -18.81 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.95 Total: -114.19 kcal Atomic # 8 Polarization: -46.89 SS G_CDS: -4.63 Total: -51.52 kcal Atomic # 14 Polarization: 35.56 SS G_CDS: 2.03 Total: 37.59 kcal Atomic # 16 Polarization: 41.46 SS G_CDS: -0.35 Total: 41.11 kcal Total: -74.17 -2.41 -76.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155054637.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.550 kcal (2) G-P(sol) polarization free energy of solvation -74.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds