Wall clock time and date at job start Tue Mar 31 2020 05:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86804 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47051 * 274.98987 * 3 2 1 5 5 H 1.48500 * 109.47019 * 34.98632 * 3 2 1 6 6 H 1.48494 * 109.46957 * 154.99189 * 3 2 1 7 7 C 1.40040 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 186.33519 * 7 2 1 9 9 C 1.41143 * 120.00202 * 6.33449 * 7 2 1 10 10 N 1.33597 * 119.17313 * 173.62826 * 9 7 2 11 11 C 1.31661 * 120.79512 * 180.02562 * 10 9 7 12 12 C 1.40081 * 119.13646 * 359.97438 * 11 10 9 13 13 N 1.38802 * 120.76024 * 180.02562 * 12 11 10 14 14 C 1.46499 * 120.00120 * 180.02562 * 13 12 11 15 15 H 1.08994 * 109.64521 * 325.43172 * 14 13 12 16 16 C 1.53884 * 109.64882 * 205.00354 * 14 13 12 17 17 C 1.55044 * 106.62312 * 192.96935 * 16 14 13 18 18 S 1.83289 * 102.56885 * 42.43370 * 17 16 14 19 19 O 1.42100 * 109.35257 * 90.18457 * 18 17 16 20 20 O 1.42104 * 109.35342 * 223.38832 * 18 17 16 21 21 C 1.54162 * 109.64573 * 85.72737 * 14 13 12 22 22 C 1.40085 * 118.48401 * 0.27860 * 12 11 10 23 23 N 1.31658 * 119.13476 * 359.45926 * 22 12 11 24 24 H 0.97008 * 119.99898 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.43295 * 180.02562 * 11 10 9 26 26 H 0.96997 * 119.99833 * 0.02562 * 13 12 11 27 27 H 1.09006 * 110.02448 * 312.26212 * 16 14 13 28 28 H 1.08994 * 110.02794 * 73.62785 * 16 14 13 29 29 H 1.09000 * 110.78739 * 160.70232 * 17 16 14 30 30 H 1.09000 * 110.78877 * 283.97345 * 17 16 14 31 31 H 1.08995 * 110.32321 * 266.66776 * 21 14 13 32 32 H 1.09008 * 110.31772 * 28.86178 * 21 14 13 33 33 H 1.07994 * 120.43485 * 179.72358 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4120 0.5919 7 6 2.0074 -1.2128 -0.0005 8 1 3.0825 -1.2158 0.1027 9 6 1.3081 -2.4313 -0.1359 10 7 1.9988 -3.5678 -0.2634 11 6 1.3791 -4.7223 -0.3922 12 6 -0.0215 -4.7482 -0.3939 13 7 -0.7092 -5.9465 -0.5271 14 6 -2.1741 -5.9542 -0.5272 15 1 -2.5447 -5.1806 0.1451 16 6 -2.6844 -7.3301 -0.0639 17 6 -4.1967 -7.3792 -0.4021 18 16 -4.2557 -6.6334 -2.0753 19 8 -4.1135 -7.6558 -3.0519 20 8 -5.3486 -5.7282 -2.1492 21 6 -2.6937 -5.6892 -1.9543 22 6 -0.7122 -3.5365 -0.2635 23 7 -0.0278 -2.4193 -0.1335 24 1 -0.4850 0.8401 0.0004 25 1 1.9432 -5.6376 -0.4944 26 1 -0.2198 -6.7788 -0.6200 27 1 -2.1570 -8.1222 -0.5955 28 1 -2.5376 -7.4402 1.0105 29 1 -4.5549 -8.4084 -0.4244 30 1 -4.7717 -6.7865 0.3094 31 1 -2.8825 -4.6252 -2.0969 32 1 -1.9758 -6.0491 -2.6914 33 1 -1.7920 -3.5194 -0.2654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162499524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:52 Heat of formation + Delta-G solvation = -11.999118 kcal Electronic energy + Delta-G solvation = -19706.989842 eV Core-core repulsion = 16474.463082 eV Total energy + Delta-G solvation = -3232.526759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23115 -37.48475 -37.11037 -36.09249 -34.04429 -32.93078 -31.81964 -29.87734 -28.63908 -25.93917 -24.40677 -23.27817 -21.67848 -20.70947 -18.94170 -17.89467 -17.22789 -16.91519 -16.23534 -15.76926 -15.67610 -15.24719 -14.48368 -14.45289 -14.19951 -14.05080 -13.22931 -12.74758 -12.69015 -12.49312 -12.31281 -12.25619 -12.11302 -12.09295 -11.29997 -11.25795 -11.20460 -10.93132 -10.66372 -10.58955 -10.25229 -9.93240 -9.47187 -9.28664 -9.02153 -7.35247 -6.94854 -6.49899 -4.47069 -0.07710 2.39486 2.64276 2.82308 3.09198 3.13908 3.14541 3.46234 3.70699 3.94123 4.02280 4.26722 4.49368 4.55539 4.66376 4.70920 4.84344 5.25473 5.35847 5.49911 5.63766 5.70649 5.79959 5.87774 5.97474 6.17262 6.33393 6.98845 7.05022 7.26593 7.94354 8.19252 8.33118 8.47729 8.66373 9.11987 10.14979 10.31126 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.003943 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.425320 B = 7099.564741 C = 7664.187910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.723 5.723 2 C 0.068 3.932 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.411 4.411 8 H 0.090 0.910 9 C 0.370 3.630 10 N -0.567 5.567 11 C 0.110 3.890 12 C -0.052 4.052 13 N -0.735 5.735 14 C 0.173 3.827 15 H 0.095 0.905 16 C -0.126 4.126 17 C -0.587 4.587 18 S 2.387 3.613 19 O -0.942 6.942 20 O -0.941 6.941 21 C -0.609 4.609 22 C 0.104 3.896 23 N -0.477 5.477 24 H 0.273 0.727 25 H 0.127 0.873 26 H 0.389 0.611 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -11.615 0.306 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.346 5.346 2 C -0.157 4.157 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.447 4.447 8 H 0.108 0.892 9 C 0.130 3.870 10 N -0.286 5.286 11 C -0.065 4.065 12 C -0.156 4.156 13 N -0.372 5.372 14 C 0.063 3.937 15 H 0.113 0.887 16 C -0.165 4.165 17 C -0.717 4.717 18 S 2.570 3.430 19 O -0.939 6.939 20 O -0.938 6.938 21 C -0.741 4.741 22 C -0.073 4.073 23 N -0.194 5.194 24 H 0.084 0.916 25 H 0.145 0.855 26 H 0.223 0.777 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.155 0.845 30 H 0.157 0.843 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -7.752 -10.500 -0.295 13.055 hybrid contribution 0.493 -0.430 0.392 0.762 sum -7.260 -10.930 0.097 13.122 Atomic orbital electron populations 1.70135 1.07198 1.27884 1.29405 1.26020 0.94945 1.01157 0.93586 0.86182 0.80452 0.80351 0.79053 1.19484 1.20135 1.18411 1.19139 0.94998 0.87827 1.42759 0.89199 1.19819 0.85507 0.90778 0.90896 1.68578 1.40418 0.98408 1.21187 1.22203 0.89079 0.96399 0.98775 1.19125 0.93482 0.87707 1.15257 1.43405 1.01662 1.06159 1.86004 1.20919 0.84436 0.96874 0.91436 0.88743 1.22434 0.91000 0.97703 1.05385 1.30580 1.03902 1.13755 1.23456 1.09071 0.78228 0.77168 0.78493 1.93607 1.86924 1.57128 1.56279 1.93615 1.50078 1.63849 1.86291 1.31204 1.20089 1.15132 1.07704 1.22714 0.98919 0.87540 0.98115 1.69290 1.08646 1.25434 1.16029 0.91591 0.85546 0.77678 0.89247 0.87981 0.84532 0.84253 0.84102 0.84060 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.72 -18.99 11.44 55.55 0.64 -18.36 16 2 C 0.07 1.73 5.49 -17.35 -0.10 1.64 16 3 Si 0.92 18.65 29.56 -169.99 -5.03 13.63 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.41 -11.23 9.35 -37.80 -0.35 -11.58 16 8 H 0.09 2.38 7.86 -52.49 -0.41 1.97 16 9 C 0.37 10.25 7.35 -158.23 -1.16 9.09 16 10 N -0.57 -14.55 10.34 -12.49 -0.13 -14.68 16 11 C 0.11 2.35 11.20 -16.93 -0.19 2.16 16 12 C -0.05 -1.00 6.71 -83.32 -0.56 -1.56 16 13 N -0.74 -10.14 5.20 -50.74 -0.26 -10.41 16 14 C 0.17 1.90 2.58 -66.86 -0.17 1.72 16 15 H 0.09 1.08 6.52 -51.93 -0.34 0.74 16 16 C -0.13 -0.94 5.98 -25.19 -0.15 -1.09 16 17 C -0.59 -3.87 7.31 38.24 0.28 -3.59 16 18 S 2.39 23.73 6.11 -107.50 -0.66 23.08 16 19 O -0.94 -12.39 18.15 -57.71 -1.05 -13.44 16 20 O -0.94 -12.92 18.15 -57.71 -1.05 -13.97 16 21 C -0.61 -6.52 6.92 37.77 0.26 -6.26 16 22 C 0.10 2.31 10.46 -16.93 -0.18 2.13 16 23 N -0.48 -12.77 7.87 -12.49 -0.10 -12.87 16 24 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 25 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.39 4.47 8.62 -40.82 -0.35 4.12 16 27 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.14 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.14 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.14 1.61 8.14 -51.93 -0.42 1.18 16 32 H 0.14 1.51 8.07 -51.92 -0.42 1.09 16 33 H 0.13 2.42 6.38 -52.49 -0.33 2.08 16 LS Contribution 295.95 15.07 4.46 4.46 Total: -1.00 -35.68 295.95 -9.02 -44.69 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -3.53 Total: 5.20 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -2.32 Total: -7.34 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.14 Total: -56.32 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -2.09 Total: -27.40 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 16 Polarization: 23.73 SS G_CDS: -0.66 Total: 23.08 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -35.68 -9.02 -44.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162499524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.695 kcal (2) G-P(sol) polarization free energy of solvation -35.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds