Wall clock time and date at job start Tue Mar 31 2020 05:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30728 * 1 3 3 Si 1.86804 * 120.00141 * 2 1 4 4 H 1.48503 * 109.47051 * 274.98987 * 3 2 1 5 5 H 1.48500 * 109.47019 * 34.98632 * 3 2 1 6 6 H 1.48494 * 109.46957 * 154.99189 * 3 2 1 7 7 C 1.40040 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99886 * 186.33519 * 7 2 1 9 9 C 1.41143 * 120.00202 * 6.33449 * 7 2 1 10 10 N 1.33597 * 119.17313 * 173.62826 * 9 7 2 11 11 C 1.31661 * 120.79512 * 180.02562 * 10 9 7 12 12 C 1.40081 * 119.13646 * 359.97438 * 11 10 9 13 13 N 1.38802 * 120.76024 * 180.02562 * 12 11 10 14 14 C 1.46499 * 120.00120 * 180.02562 * 13 12 11 15 15 H 1.08994 * 109.64521 * 325.43172 * 14 13 12 16 16 C 1.53884 * 109.64882 * 205.00354 * 14 13 12 17 17 C 1.55044 * 106.62312 * 192.96935 * 16 14 13 18 18 S 1.83289 * 102.56885 * 42.43370 * 17 16 14 19 19 O 1.42100 * 109.35257 * 90.18457 * 18 17 16 20 20 O 1.42104 * 109.35342 * 223.38832 * 18 17 16 21 21 C 1.54162 * 109.64573 * 85.72737 * 14 13 12 22 22 C 1.40085 * 118.48401 * 0.27860 * 12 11 10 23 23 N 1.31658 * 119.13476 * 359.45926 * 22 12 11 24 24 H 0.97008 * 119.99898 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.43295 * 180.02562 * 11 10 9 26 26 H 0.96997 * 119.99833 * 0.02562 * 13 12 11 27 27 H 1.09006 * 110.02448 * 312.26212 * 16 14 13 28 28 H 1.08994 * 110.02794 * 73.62785 * 16 14 13 29 29 H 1.09000 * 110.78739 * 160.70232 * 17 16 14 30 30 H 1.09000 * 110.78877 * 283.97345 * 17 16 14 31 31 H 1.08995 * 110.32321 * 266.66776 * 21 14 13 32 32 H 1.09008 * 110.31772 * 28.86178 * 21 14 13 33 33 H 1.07994 * 120.43485 * 179.72358 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 2.3834 2.1073 -1.3948 5 1 1.4955 2.6200 0.8028 6 1 3.5876 1.4120 0.5919 7 6 2.0074 -1.2128 -0.0005 8 1 3.0825 -1.2158 0.1027 9 6 1.3081 -2.4313 -0.1359 10 7 1.9988 -3.5678 -0.2634 11 6 1.3791 -4.7223 -0.3922 12 6 -0.0215 -4.7482 -0.3939 13 7 -0.7092 -5.9465 -0.5271 14 6 -2.1741 -5.9542 -0.5272 15 1 -2.5447 -5.1806 0.1451 16 6 -2.6844 -7.3301 -0.0639 17 6 -4.1967 -7.3792 -0.4021 18 16 -4.2557 -6.6334 -2.0753 19 8 -4.1135 -7.6558 -3.0519 20 8 -5.3486 -5.7282 -2.1492 21 6 -2.6937 -5.6892 -1.9543 22 6 -0.7122 -3.5365 -0.2635 23 7 -0.0278 -2.4193 -0.1335 24 1 -0.4850 0.8401 0.0004 25 1 1.9432 -5.6376 -0.4944 26 1 -0.2198 -6.7788 -0.6200 27 1 -2.1570 -8.1222 -0.5955 28 1 -2.5376 -7.4402 1.0105 29 1 -4.5549 -8.4084 -0.4244 30 1 -4.7717 -6.7865 0.3094 31 1 -2.8825 -4.6252 -2.0969 32 1 -1.9758 -6.0491 -2.6914 33 1 -1.7920 -3.5194 -0.2654 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162499524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:51 Heat of formation + Delta-G solvation = -40.959500 kcal Electronic energy + Delta-G solvation = -19708.245658 eV Core-core repulsion = 16474.463082 eV Total energy + Delta-G solvation = -3233.782576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.93863 -38.60158 -38.06103 -37.04118 -35.66688 -34.33295 -33.66741 -31.05739 -30.02215 -27.47106 -25.52541 -24.88782 -23.21229 -21.87011 -19.79133 -19.72421 -18.41782 -17.93911 -17.42603 -17.05479 -16.98965 -16.59571 -16.08225 -15.64330 -15.31884 -14.90024 -14.84899 -14.41069 -13.85642 -13.48986 -13.39839 -13.21435 -13.13118 -12.99169 -12.96596 -12.89355 -12.54128 -12.06298 -11.96664 -11.87390 -11.56750 -11.26988 -11.22943 -11.10268 -10.73204 -9.21523 -8.54065 -8.33116 -6.34265 -0.88585 0.86154 1.03756 1.42978 1.53149 1.57946 1.63565 2.26446 2.62310 2.73078 2.84370 3.14496 3.48492 3.70315 3.77067 3.93422 3.99125 4.06028 4.09722 4.17216 4.35092 4.57357 4.66612 4.75247 4.86678 5.00710 5.09784 5.18439 5.34274 5.56356 6.23700 6.46668 6.58454 6.79248 7.08343 7.33262 8.30389 8.49719 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.003943 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.425320 B = 7099.564741 C = 7664.187910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.028 3.972 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.339 3.661 10 N -0.591 5.591 11 C 0.089 3.911 12 C -0.008 4.008 13 N -0.721 5.721 14 C 0.161 3.839 15 H 0.092 0.908 16 C -0.121 4.121 17 C -0.553 4.553 18 S 2.400 3.600 19 O -0.976 6.976 20 O -0.985 6.985 21 C -0.614 4.614 22 C 0.076 3.924 23 N -0.510 5.510 24 H 0.279 0.721 25 H 0.166 0.834 26 H 0.406 0.594 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.168 0.832 30 H 0.160 0.840 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.993 -13.801 1.153 15.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.193 4.193 3 Si 0.812 3.188 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.496 4.496 8 H 0.099 0.901 9 C 0.096 3.904 10 N -0.310 5.310 11 C -0.085 4.085 12 C -0.114 4.114 13 N -0.357 5.357 14 C 0.053 3.947 15 H 0.110 0.890 16 C -0.160 4.160 17 C -0.686 4.686 18 S 2.587 3.413 19 O -0.973 6.973 20 O -0.982 6.982 21 C -0.746 4.746 22 C -0.099 4.099 23 N -0.227 5.227 24 H 0.089 0.911 25 H 0.183 0.817 26 H 0.243 0.757 27 H 0.128 0.872 28 H 0.141 0.859 29 H 0.186 0.814 30 H 0.178 0.822 31 H 0.146 0.854 32 H 0.158 0.842 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.505 -12.771 0.503 15.352 hybrid contribution 0.598 -0.101 0.135 0.621 sum -7.908 -12.872 0.637 15.120 Atomic orbital electron populations 1.70209 1.08653 1.29050 1.30868 1.26861 0.95779 1.04169 0.92522 0.85058 0.78955 0.75577 0.79208 1.18995 1.18852 1.18167 1.19364 0.94880 0.89309 1.46025 0.90082 1.20088 0.86244 0.91636 0.92440 1.68547 1.41391 0.99305 1.21723 1.22867 0.90357 0.96553 0.98735 1.19103 0.93171 0.88945 1.10187 1.43457 1.03153 1.04798 1.84314 1.21257 0.82384 0.99622 0.91478 0.89047 1.22470 0.91232 0.95464 1.06801 1.30417 1.03891 1.15347 1.18963 1.08564 0.76694 0.76090 0.79940 1.93560 1.86987 1.57490 1.59244 1.93558 1.51488 1.65415 1.87698 1.31149 1.21072 1.14731 1.07602 1.23155 1.00049 0.87780 0.98944 1.69194 1.08628 1.27745 1.17158 0.91054 0.81666 0.75676 0.87192 0.85925 0.81387 0.82155 0.85446 0.84158 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.59 11.44 21.84 0.25 -41.34 16 2 C 0.03 1.47 5.49 85.29 0.47 1.93 16 3 Si 0.99 39.36 29.56 68.60 2.03 41.39 16 4 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.46 -26.28 9.35 23.42 0.22 -26.06 16 8 H 0.08 4.54 7.86 -2.91 -0.02 4.52 16 9 C 0.34 19.50 7.35 134.95 0.99 20.50 16 10 N -0.59 -30.87 10.34 -193.43 -2.00 -32.87 16 11 C 0.09 3.68 11.20 85.17 0.95 4.63 16 12 C -0.01 -0.30 6.71 38.93 0.26 -0.04 16 13 N -0.72 -17.55 5.20 -314.44 -1.63 -19.18 16 14 C 0.16 3.02 2.58 45.68 0.12 3.14 16 15 H 0.09 1.83 6.52 -2.39 -0.02 1.82 16 16 C -0.12 -1.17 5.98 31.59 0.19 -0.98 16 17 C -0.55 -4.55 7.31 72.68 0.53 -4.02 16 18 S 2.40 43.26 6.11 -56.49 -0.34 42.92 16 19 O -0.98 -24.12 18.15 -127.49 -2.31 -26.43 16 20 O -0.98 -26.37 18.15 -127.49 -2.31 -28.68 16 21 C -0.61 -12.24 6.92 72.38 0.50 -11.74 16 22 C 0.08 3.38 10.46 85.17 0.89 4.27 16 23 N -0.51 -28.14 7.87 -193.43 -1.52 -29.67 16 24 H 0.28 13.66 8.29 -92.70 -0.77 12.90 16 25 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 26 H 0.41 7.57 8.62 -92.71 -0.80 6.77 16 27 H 0.11 0.72 8.12 -2.38 -0.02 0.70 16 28 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.17 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.16 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.14 2.82 8.07 -2.38 -0.02 2.80 16 33 H 0.15 5.66 6.38 -2.91 -0.02 5.64 16 Total: -1.00 -82.04 295.95 -2.37 -84.41 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.36 Total: 17.82 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 5.12 Total: -8.37 kcal Atomic # 7 Polarization: -118.15 SS G_CDS: -4.91 Total: -123.06 kcal Atomic # 8 Polarization: -50.48 SS G_CDS: -4.63 Total: -55.11 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Atomic # 16 Polarization: 43.26 SS G_CDS: -0.34 Total: 42.92 kcal Total: -82.04 -2.37 -84.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162499524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.454 kcal (2) G-P(sol) polarization free energy of solvation -82.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds