Wall clock time and date at job start Tue Mar 31 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30729 * 1 3 3 Si 1.86796 * 119.99771 * 2 1 4 4 H 1.48502 * 109.47235 * 269.99913 * 3 2 1 5 5 H 1.48500 * 109.47373 * 30.00291 * 3 2 1 6 6 H 1.48500 * 109.46997 * 150.00486 * 3 2 1 7 7 C 1.40044 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99747 * 179.97438 * 7 2 1 9 9 C 1.41140 * 120.00355 * 359.97438 * 7 2 1 10 10 N 1.33598 * 119.17636 * 179.97438 * 9 7 2 11 11 C 1.31663 * 120.79785 * 180.02562 * 10 9 7 12 12 C 1.40086 * 119.13391 * 0.02562 * 11 10 9 13 13 N 1.38804 * 120.75694 * 180.02562 * 12 11 10 14 14 C 1.46497 * 119.99800 * 180.02562 * 13 12 11 15 15 H 1.09002 * 110.01428 * 34.29343 * 14 13 12 16 16 C 1.53879 * 110.02766 * 155.67686 * 14 13 12 17 17 C 1.54158 * 108.70718 * 166.51859 * 16 14 13 18 18 S 1.82919 * 105.08326 * 332.08882 * 17 16 14 19 19 O 1.42096 * 109.35348 * 115.52557 * 18 17 16 20 20 O 1.42107 * 109.35142 * 248.59153 * 18 17 16 21 21 C 1.55051 * 110.02554 * 272.91398 * 14 13 12 22 22 C 1.40087 * 118.48409 * 0.26961 * 12 11 10 23 23 N 1.31660 * 119.13407 * 359.47029 * 22 12 11 24 24 H 0.96996 * 120.00560 * 359.97438 * 1 2 3 25 25 H 1.07994 * 120.43441 * 179.97438 * 11 10 9 26 26 H 0.96996 * 119.99546 * 359.97438 * 13 12 11 27 27 H 1.09004 * 109.64086 * 286.37078 * 16 14 13 28 28 H 1.08998 * 109.64936 * 46.79186 * 16 14 13 29 29 H 1.08998 * 110.32417 * 90.99028 * 17 16 14 30 30 H 1.09000 * 110.31837 * 213.08613 * 17 16 14 31 31 H 1.09001 * 110.78634 * 316.49755 * 21 14 13 32 32 H 1.09000 * 110.78963 * 79.95866 * 21 14 13 33 33 H 1.07997 * 120.42721 * 179.72920 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2412 1.6177 0.0000 4 1 2.4887 2.0465 -1.4001 5 1 1.4387 2.6527 0.7001 6 1 3.5388 1.4402 0.6999 7 6 2.0075 -1.2128 -0.0005 8 1 3.0876 -1.2128 -0.0010 9 6 1.3018 -2.4352 -0.0005 10 7 1.9865 -3.5824 -0.0016 11 6 1.3607 -4.7408 -0.0021 12 6 -0.0400 -4.7594 -0.0021 13 7 -0.7340 -5.9615 -0.0022 14 6 -2.1990 -5.9614 -0.0027 15 1 -2.5718 -5.1154 -0.5801 16 6 -2.7258 -7.2790 -0.5982 17 6 -4.2293 -7.3993 -0.2796 18 16 -4.4641 -6.4580 1.2711 19 8 -5.3042 -5.3397 1.0206 20 8 -4.7789 -7.3577 2.3251 21 6 -2.7305 -5.8871 1.4519 22 6 -0.7243 -3.5370 -0.0074 23 7 -0.0340 -2.4159 -0.0014 24 1 -0.4851 0.8400 0.0004 25 1 1.9200 -5.6647 -0.0034 26 1 -0.2490 -6.8014 -0.0025 27 1 -2.5790 -7.2775 -1.6783 28 1 -2.1912 -8.1202 -0.1570 29 1 -4.8225 -6.9608 -1.0820 30 1 -4.5031 -8.4443 -0.1349 31 1 -2.1688 -6.5562 2.1037 32 1 -2.6962 -4.8633 1.8245 33 1 -1.8041 -3.5147 -0.0119 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162499525.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:55 Heat of formation + Delta-G solvation = -40.953560 kcal Electronic energy + Delta-G solvation = -19726.662732 eV Core-core repulsion = 16492.880414 eV Total energy + Delta-G solvation = -3233.782318 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.93595 -38.58053 -38.05895 -37.04870 -35.67924 -34.36316 -33.66913 -31.06834 -30.01285 -27.46999 -25.54142 -24.89633 -23.22519 -21.87094 -19.79893 -19.72361 -18.45458 -17.99238 -17.40602 -17.03903 -16.86976 -16.59097 -16.07766 -15.61109 -15.37422 -14.99101 -14.86573 -14.41030 -13.85084 -13.62869 -13.41547 -13.23087 -13.10943 -12.98884 -12.88599 -12.81104 -12.54834 -12.01392 -11.94373 -11.90283 -11.58552 -11.28013 -11.23815 -11.12296 -10.72784 -9.21836 -8.54520 -8.31903 -6.34714 -0.89958 0.85556 1.03679 1.43011 1.53281 1.58178 1.62861 2.26435 2.62417 2.73841 2.84761 3.10816 3.53463 3.66770 3.80506 3.90423 4.00012 4.04994 4.07848 4.15621 4.34708 4.53209 4.70803 4.74171 4.87316 5.01221 5.09579 5.17439 5.34188 5.55614 6.23059 6.45259 6.58234 6.78938 7.09366 7.33039 8.30338 8.49959 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.029424 B = 0.004038 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.391834 B = 6932.798408 C = 7570.355216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.339 3.661 10 N -0.590 5.590 11 C 0.091 3.909 12 C -0.009 4.009 13 N -0.715 5.715 14 C 0.154 3.846 15 H 0.087 0.913 16 C -0.114 4.114 17 C -0.556 4.556 18 S 2.395 3.605 19 O -0.983 6.983 20 O -0.978 6.978 21 C -0.607 4.607 22 C 0.074 3.926 23 N -0.510 5.510 24 H 0.279 0.721 25 H 0.168 0.832 26 H 0.408 0.592 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.152 0.848 32 H 0.119 0.881 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -14.796 -2.175 16.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.186 1.186 5 H -0.191 1.191 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.100 0.900 9 C 0.096 3.904 10 N -0.309 5.309 11 C -0.083 4.083 12 C -0.115 4.115 13 N -0.352 5.352 14 C 0.045 3.955 15 H 0.105 0.895 16 C -0.153 4.153 17 C -0.690 4.690 18 S 2.583 3.417 19 O -0.981 6.981 20 O -0.975 6.975 21 C -0.739 4.739 22 C -0.101 4.101 23 N -0.228 5.228 24 H 0.089 0.911 25 H 0.185 0.815 26 H 0.245 0.755 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.175 0.825 30 H 0.188 0.812 31 H 0.170 0.830 32 H 0.137 0.863 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.005 -13.529 -1.577 15.798 hybrid contribution 0.602 -0.270 -0.166 0.680 sum -7.403 -13.799 -1.743 15.756 Atomic orbital electron populations 1.70213 1.08694 1.29064 1.30855 1.26887 0.95785 1.04252 0.92537 0.85056 0.78770 0.75403 0.79480 1.18602 1.19058 1.18250 1.19382 0.94482 0.89098 1.46473 0.89967 1.20097 0.86260 0.91645 0.92414 1.68545 1.41340 0.98976 1.22059 1.22876 0.90166 0.96637 0.98575 1.19093 0.93182 0.88624 1.10620 1.43287 1.02743 1.03868 1.85256 1.21492 0.82997 1.00278 0.90770 0.89519 1.22143 0.91237 0.96498 1.05417 1.30257 1.04436 1.16059 1.18220 1.08639 0.77919 0.76029 0.79131 1.93574 1.65141 1.52954 1.86388 1.93553 1.83459 1.65162 1.55322 1.31230 1.22908 1.12666 1.07068 1.23131 0.99941 0.87815 0.99225 1.69200 1.08467 1.28021 1.17067 0.91068 0.81452 0.75459 0.86687 0.86728 0.82464 0.81155 0.82985 0.86262 0.83836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -42.08 11.41 21.84 0.25 -41.83 16 2 C 0.03 1.40 5.50 85.30 0.47 1.87 16 3 Si 0.99 39.54 29.56 68.60 2.03 41.57 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 6 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 7 C -0.46 -26.29 9.35 23.42 0.22 -26.07 16 8 H 0.08 4.60 7.85 -2.91 -0.02 4.58 16 9 C 0.34 19.59 7.35 134.95 0.99 20.58 16 10 N -0.59 -30.85 10.34 -193.43 -2.00 -32.86 16 11 C 0.09 3.78 11.20 85.17 0.95 4.74 16 12 C -0.01 -0.34 6.72 38.94 0.26 -0.08 16 13 N -0.71 -17.36 5.28 -312.99 -1.65 -19.01 16 14 C 0.15 2.97 2.61 45.99 0.12 3.09 16 15 H 0.09 1.91 6.51 -2.39 -0.02 1.89 16 16 C -0.11 -1.08 5.92 31.28 0.19 -0.89 16 17 C -0.56 -4.62 7.26 72.37 0.53 -4.09 16 18 S 2.40 44.54 6.11 -56.49 -0.34 44.20 16 19 O -0.98 -27.61 18.15 -127.47 -2.31 -29.92 16 20 O -0.98 -24.55 18.15 -127.47 -2.31 -26.86 16 21 C -0.61 -12.04 6.97 72.68 0.51 -11.53 16 22 C 0.07 3.37 10.47 85.17 0.89 4.26 16 23 N -0.51 -28.54 7.84 -193.43 -1.52 -30.05 16 24 H 0.28 13.85 8.29 -92.71 -0.77 13.08 16 25 H 0.17 5.38 8.06 -2.91 -0.02 5.35 16 26 H 0.41 7.32 8.62 -92.71 -0.80 6.52 16 27 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.11 0.57 8.11 -2.39 -0.02 0.55 16 29 H 0.16 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.17 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.14 5.78 6.36 -2.91 -0.02 5.76 16 Total: -1.00 -82.96 296.01 -2.38 -85.34 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.36 Total: 17.56 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.13 Total: -8.13 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -4.92 Total: -123.76 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -4.63 Total: -56.78 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Atomic # 16 Polarization: 44.54 SS G_CDS: -0.34 Total: 44.20 kcal Total: -82.96 -2.38 -85.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162499525.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.387 kcal (2) G-P(sol) polarization free energy of solvation -82.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds