Wall clock time and date at job start Tue Mar 31 2020 05:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00070 * 2 1 4 4 H 1.48501 * 109.47226 * 275.00047 * 3 2 1 5 5 H 1.48497 * 109.46975 * 35.00332 * 3 2 1 6 6 H 1.48500 * 109.47171 * 155.00248 * 3 2 1 7 7 C 1.37879 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99686 * 175.32356 * 7 2 1 9 9 C 1.50693 * 120.00118 * 355.59707 * 7 2 1 10 10 H 1.08996 * 109.47070 * 305.15551 * 9 7 2 11 11 C 1.53003 * 109.47251 * 65.15701 * 9 7 2 12 12 Cl 1.80296 * 109.47246 * 186.27661 * 11 9 7 13 13 O 1.42900 * 109.46979 * 185.15347 * 9 7 2 14 14 C 1.42905 * 113.99636 * 150.00175 * 13 9 7 15 15 C 1.50696 * 109.46946 * 179.97438 * 14 13 9 16 16 C 1.38382 * 119.93012 * 269.72383 * 15 14 13 17 17 C 1.38335 * 120.29284 * 179.76613 * 16 15 14 18 18 C 1.37977 * 120.14450 * 0.51104 * 17 16 15 19 19 C 1.39548 * 119.85579 * 359.74534 * 18 17 16 20 20 C 1.47848 * 120.14632 * 179.97438 * 19 18 17 21 21 N 1.34777 * 119.99988 * 0.02562 * 20 19 18 22 22 O 1.21554 * 120.00110 * 180.02562 * 20 19 18 23 23 C 1.37942 * 119.92959 * 90.00074 * 15 14 13 24 24 H 0.97006 * 119.99513 * 359.97438 * 1 2 3 25 25 H 1.09009 * 109.46789 * 306.27168 * 11 9 7 26 26 H 1.08990 * 109.47305 * 66.26823 * 11 9 7 27 27 H 1.09002 * 109.47103 * 299.99926 * 14 13 9 28 28 H 1.09001 * 109.47516 * 60.00082 * 14 13 9 29 29 H 1.07995 * 119.85016 * 359.97438 * 16 15 14 30 30 H 1.08003 * 119.92624 * 180.25595 * 17 16 15 31 31 H 1.08012 * 120.07283 * 179.76749 * 18 17 16 32 32 H 0.96997 * 119.99935 * 0.02562 * 21 20 19 33 33 H 0.96994 * 119.99749 * 180.02562 * 21 20 19 34 34 H 1.08001 * 120.06704 * 359.94922 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1075 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4120 0.5916 7 6 2.0045 -1.1941 -0.0005 8 1 3.0819 -1.1956 -0.0768 9 6 1.2544 -2.4972 0.0991 10 1 0.6177 -2.4833 0.9836 11 6 0.3894 -2.6845 -1.1490 12 17 -0.6455 -4.1473 -0.9491 13 8 2.1856 -3.5764 0.1994 14 6 1.6994 -4.6965 0.9419 15 6 2.7570 -5.7692 0.9829 16 6 2.7948 -6.7397 -0.0029 17 6 3.7653 -7.7251 0.0247 18 6 4.6963 -7.7523 1.0427 19 6 4.6606 -6.7798 2.0429 20 6 5.6548 -6.8032 3.1370 21 7 6.5984 -7.7649 3.1697 22 8 5.6210 -5.9551 4.0071 23 6 3.6819 -5.7851 2.0062 24 1 -0.4850 0.8401 0.0004 25 1 -0.2436 -1.8078 -1.2872 26 1 1.0315 -2.8100 -2.0207 27 1 1.4601 -4.3827 1.9579 28 1 0.8028 -5.0890 0.4621 29 1 2.0654 -6.7256 -0.7992 30 1 3.7918 -8.4771 -0.7500 31 1 5.4512 -8.5244 1.0652 32 1 6.6256 -8.4415 2.4751 33 1 7.2504 -7.7804 3.8877 34 1 3.6491 -5.0293 2.7770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222958163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:40 Heat of formation + Delta-G solvation = -79.440826 kcal Electronic energy + Delta-G solvation = -19349.269521 eV Core-core repulsion = 16079.481812 eV Total energy + Delta-G solvation = -3269.787709 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09721 -38.39395 -36.96586 -34.76913 -34.01440 -33.28129 -31.56641 -30.97785 -29.00269 -25.58558 -25.11970 -24.10299 -21.70232 -20.93780 -20.22193 -18.13950 -16.91805 -16.59565 -16.01083 -15.81831 -15.13941 -14.91542 -14.77173 -14.44487 -13.90584 -13.67947 -13.62543 -12.92481 -12.69262 -12.19460 -12.03983 -11.69892 -11.56158 -11.16980 -11.00229 -10.83745 -10.80628 -10.37525 -10.13027 -9.86534 -9.86029 -9.43992 -9.28580 -8.90095 -8.79120 -8.63067 -8.11866 -6.31858 -4.37542 0.88716 1.39615 2.85877 3.18962 3.27401 3.32578 3.38045 3.44299 3.86389 4.23567 4.69408 4.72434 4.89075 5.02282 5.04435 5.38085 5.47420 5.53629 5.74560 5.96318 6.10866 6.20897 6.30362 6.33201 6.41218 6.47885 6.62075 6.78378 6.86252 6.94620 7.18786 7.29032 7.64448 7.94408 8.14868 8.34373 8.80971 9.30669 10.75696 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016724 B = 0.004661 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.870260 B = 6006.322605 C = 7329.730728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.213 3.787 10 H 0.035 0.965 11 C -0.028 4.028 12 Cl -0.253 7.253 13 O -0.380 6.380 14 C 0.084 3.916 15 C -0.077 4.077 16 C -0.070 4.070 17 C -0.133 4.133 18 C -0.091 4.091 19 C -0.149 4.149 20 C 0.565 3.435 21 N -0.855 5.855 22 O -0.538 6.538 23 C -0.038 4.038 24 H 0.269 0.731 25 H 0.123 0.877 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.400 0.600 33 H 0.403 0.597 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.888 -15.746 0.320 17.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.156 3.844 10 H 0.053 0.947 11 C -0.090 4.090 12 Cl -0.227 7.227 13 O -0.300 6.300 14 C 0.007 3.993 15 C -0.077 4.077 16 C -0.089 4.089 17 C -0.151 4.151 18 C -0.110 4.110 19 C -0.152 4.152 20 C 0.352 3.648 21 N -0.419 5.419 22 O -0.415 6.415 23 C -0.057 4.057 24 H 0.079 0.921 25 H 0.141 0.859 26 H 0.091 0.909 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.229 0.771 33 H 0.233 0.767 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.662 -15.080 0.732 16.502 hybrid contribution 0.380 0.425 -0.093 0.578 sum 7.042 -14.655 0.638 16.272 Atomic orbital electron populations 1.69856 1.05994 1.27733 1.49183 1.24998 0.95098 0.99739 0.94256 0.86260 0.79943 0.81855 0.78217 1.20407 1.20825 1.19389 1.21074 0.94440 0.88329 1.51427 0.90869 1.20039 0.87472 0.84388 0.92458 0.94693 1.25933 0.94306 0.85834 1.02933 1.98598 1.75010 1.50960 1.98166 1.87928 1.42889 1.25661 1.73483 1.21614 0.94224 0.86780 0.96637 1.19925 0.97131 0.96162 0.94501 1.21373 0.97433 0.93021 0.97055 1.21039 0.95751 0.99516 0.98809 1.21171 0.98491 0.97343 0.93982 1.19786 0.98915 0.99292 0.97208 1.18352 0.80790 0.80668 0.85021 1.43744 1.34337 1.32033 1.31778 1.90831 1.73408 1.38036 1.39223 1.21275 0.91180 0.95710 0.97567 0.92111 0.85895 0.90948 0.93393 0.90888 0.85254 0.85473 0.86041 0.77104 0.76659 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 11.51 55.43 0.64 -23.25 16 2 C 0.06 1.63 5.34 -17.82 -0.10 1.53 16 3 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.51 -13.84 8.82 -34.44 -0.30 -14.15 16 8 H 0.07 2.01 7.82 -52.48 -0.41 1.59 16 9 C 0.21 5.28 2.31 -27.88 -0.06 5.22 16 10 H 0.04 0.93 7.79 -51.93 -0.40 0.53 16 11 C -0.03 -0.63 6.21 37.16 0.23 -0.40 16 12 Cl -0.25 -5.04 26.16 -51.86 -1.36 -6.40 16 13 O -0.38 -8.77 9.94 -35.23 -0.35 -9.12 16 14 C 0.08 1.62 5.67 36.00 0.20 1.82 16 15 C -0.08 -1.28 5.50 -104.68 -0.58 -1.86 16 16 C -0.07 -0.98 9.69 -39.49 -0.38 -1.37 16 17 C -0.13 -1.48 10.03 -39.64 -0.40 -1.88 16 18 C -0.09 -0.97 9.54 -39.19 -0.37 -1.34 16 19 C -0.15 -2.04 5.87 -104.97 -0.62 -2.66 16 20 C 0.57 7.68 8.05 -12.33 -0.10 7.58 16 21 N -0.85 -7.10 8.82 30.53 0.27 -6.83 16 22 O -0.54 -9.64 17.18 5.32 0.09 -9.55 16 23 C -0.04 -0.63 9.24 -39.18 -0.36 -0.99 16 24 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.12 3.04 6.20 -51.92 -0.32 2.72 16 26 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 27 H 0.05 0.92 8.03 -51.93 -0.42 0.50 16 28 H 0.07 1.36 5.09 -51.93 -0.26 1.09 16 29 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 30 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 31 H 0.12 0.80 6.41 -52.48 -0.34 0.46 16 32 H 0.40 2.07 6.86 -40.82 -0.28 1.79 16 33 H 0.40 2.75 8.93 -40.82 -0.36 2.38 16 34 H 0.14 2.41 7.65 -52.49 -0.40 2.01 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -30.67 308.11 -7.53 -38.20 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.60 Total: 5.24 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -2.84 Total: -8.49 kcal Atomic # 7 Polarization: -30.98 SS G_CDS: 0.91 Total: -30.08 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.26 Total: -18.67 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -5.04 SS G_CDS: -1.36 Total: -6.40 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.67 -7.53 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222958163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.240 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds