Wall clock time and date at job start Tue Mar 31 2020 05:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00400 * 2 1 4 4 H 1.48499 * 109.47317 * 239.99772 * 3 2 1 5 5 H 1.48508 * 109.47115 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47377 * 119.99575 * 3 2 1 7 7 C 1.37881 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99748 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47286 * 299.99744 * 9 7 2 11 11 C 1.52995 * 109.46985 * 59.99856 * 9 7 2 12 12 Cl 1.80301 * 109.47172 * 184.99703 * 11 9 7 13 13 O 1.42902 * 109.46682 * 179.97438 * 9 7 2 14 14 C 1.42900 * 113.99801 * 150.00193 * 13 9 7 15 15 C 1.50701 * 109.47257 * 179.97438 * 14 13 9 16 16 O 1.21287 * 119.99646 * 0.02562 * 15 14 13 17 17 N 1.34773 * 119.99846 * 179.97438 * 15 14 13 18 18 C 1.39924 * 119.99818 * 185.27752 * 17 15 14 19 19 C 1.38873 * 120.07282 * 33.33155 * 18 17 15 20 20 C 1.38106 * 119.93058 * 179.97438 * 19 18 17 21 21 C 1.38278 * 120.07475 * 0.02562 * 20 19 18 22 22 C 1.38283 * 120.13761 * 359.95736 * 21 20 19 23 23 C 1.38106 * 120.07186 * 0.04184 * 22 21 20 24 24 H 0.97005 * 119.99552 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47407 * 304.99903 * 11 9 7 26 26 H 1.08997 * 109.47390 * 65.00093 * 11 9 7 27 27 H 1.09004 * 109.47458 * 59.99379 * 14 13 9 28 28 H 1.09003 * 109.47099 * 300.00114 * 14 13 9 29 29 H 0.97000 * 120.00137 * 5.27364 * 17 15 14 30 30 H 1.08005 * 120.03105 * 359.70896 * 19 18 17 31 31 H 1.08007 * 119.96089 * 179.97438 * 20 19 18 32 32 H 1.07998 * 119.93502 * 179.97438 * 21 20 19 33 33 H 1.08001 * 119.96439 * 180.02562 * 22 21 20 34 34 H 1.08003 * 120.03629 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 6 0.3718 -2.5804 -1.2490 12 17 -0.6387 -4.0719 -1.1769 13 8 2.1796 -3.5853 0.0005 14 6 1.6980 -4.7618 0.6532 15 6 2.7523 -5.8369 0.5932 16 8 3.8120 -5.6171 0.0458 17 7 2.5179 -7.0423 1.1487 18 6 3.5346 -8.0027 1.1910 19 6 4.8581 -7.6090 1.3381 20 6 5.8592 -8.5595 1.3800 21 6 5.5449 -9.9020 1.2751 22 6 4.2279 -10.2974 1.1288 23 6 3.2222 -9.3518 1.0862 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2756 -1.7047 -1.2953 26 1 1.0038 -2.6124 -2.1365 27 1 0.7946 -5.1109 0.1530 28 1 1.4711 -4.5326 1.6945 29 1 1.6444 -7.2440 1.5193 30 1 5.1047 -6.5603 1.4154 31 1 6.8888 -8.2538 1.4940 32 1 6.3296 -10.6433 1.3077 33 1 3.9856 -11.3467 1.0475 34 1 2.1938 -9.6613 0.9716 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224463594.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:00 Heat of formation + Delta-G solvation = -66.206065 kcal Electronic energy + Delta-G solvation = -19318.118072 eV Core-core repulsion = 16048.904266 eV Total energy + Delta-G solvation = -3269.213807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36363 -38.42285 -36.97171 -34.83644 -34.60246 -33.28521 -30.94277 -30.25545 -29.20881 -26.79748 -25.24729 -22.98336 -22.36128 -21.01137 -20.29355 -17.93389 -17.21330 -16.39823 -16.18061 -15.87547 -15.43764 -14.81217 -14.63213 -14.25061 -13.82066 -13.73376 -13.32253 -13.15859 -12.81738 -12.47325 -12.08182 -11.74401 -11.60781 -11.28295 -11.21932 -11.06510 -10.85552 -10.46732 -10.35439 -10.22211 -9.52177 -9.42641 -9.36598 -8.95282 -8.65763 -8.28739 -8.10397 -6.36530 -4.42508 1.25010 1.37023 2.81218 2.97405 3.18243 3.24538 3.28307 3.38551 3.81337 4.18329 4.68866 4.86636 4.90532 4.98864 5.10208 5.22794 5.36432 5.52810 5.58326 5.70585 5.83494 5.97197 6.29107 6.29949 6.32016 6.38369 6.48055 6.53982 6.77626 7.02853 7.21286 7.41007 7.60530 7.87008 8.17544 8.35873 8.74222 9.25181 10.70713 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024856 B = 0.003873 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.239794 B = 7227.673769 C = 8166.568430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.214 3.786 10 H 0.035 0.965 11 C -0.031 4.031 12 Cl -0.254 7.254 13 O -0.361 6.361 14 C 0.034 3.966 15 C 0.515 3.485 16 O -0.497 6.497 17 N -0.681 5.681 18 C 0.158 3.842 19 C -0.124 4.124 20 C -0.100 4.100 21 C -0.144 4.144 22 C -0.103 4.103 23 C -0.152 4.152 24 H 0.271 0.729 25 H 0.131 0.869 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.410 0.590 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.789 -15.555 3.747 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.093 0.907 9 C 0.157 3.843 10 H 0.052 0.948 11 C -0.093 4.093 12 Cl -0.229 7.229 13 O -0.280 6.280 14 C -0.046 4.046 15 C 0.303 3.697 16 O -0.369 6.369 17 N -0.329 5.329 18 C 0.063 3.937 19 C -0.144 4.144 20 C -0.119 4.119 21 C -0.163 4.163 22 C -0.121 4.121 23 C -0.172 4.172 24 H 0.080 0.920 25 H 0.148 0.852 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.246 0.754 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.472 -15.222 3.246 15.947 hybrid contribution -0.493 0.654 0.206 0.844 sum 2.980 -14.568 3.452 15.265 Atomic orbital electron populations 1.69796 1.05965 1.27936 1.49337 1.24997 0.95163 0.99802 0.94175 0.86264 0.79303 0.81133 0.79169 1.19779 1.20985 1.19785 1.21040 0.94379 0.88111 1.51722 0.90662 1.20119 0.87354 0.84355 0.92483 0.94770 1.25978 0.95103 0.85378 1.02886 1.98590 1.76076 1.49272 1.98929 1.88009 1.42697 1.20325 1.76966 1.22441 0.95287 0.87766 0.99129 1.21010 0.89314 0.82346 0.77055 1.90704 1.26247 1.79686 1.40294 1.43588 1.14775 1.13747 1.60763 1.17798 0.88835 0.88336 0.98685 1.21267 0.91405 1.01157 1.00570 1.21055 0.99115 0.92749 0.98962 1.21094 0.96435 0.95988 1.02750 1.20899 0.92618 0.98962 0.99648 1.20899 1.00060 0.91347 1.04924 0.91953 0.85159 0.90703 0.88993 0.90999 0.75394 0.84579 0.85816 0.86208 0.85912 0.85782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.43 11.29 55.43 0.63 -22.80 16 2 C 0.06 1.58 5.29 -17.82 -0.09 1.49 16 3 Si 0.91 20.32 29.54 -169.99 -5.02 15.29 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.51 -13.74 8.89 -34.44 -0.31 -14.05 16 8 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 9 C 0.21 5.23 2.38 -27.88 -0.07 5.16 16 10 H 0.03 0.87 7.79 -51.93 -0.40 0.47 16 11 C -0.03 -0.71 6.17 37.16 0.23 -0.48 16 12 Cl -0.25 -4.99 26.09 -51.86 -1.35 -6.35 16 13 O -0.36 -8.51 9.49 -55.14 -0.52 -9.03 16 14 C 0.03 0.63 6.02 36.01 0.22 0.84 16 15 C 0.51 9.12 7.65 -10.99 -0.08 9.04 16 16 O -0.50 -10.76 14.18 -14.36 -0.20 -10.96 16 17 N -0.68 -9.15 5.34 -9.86 -0.05 -9.20 16 18 C 0.16 2.15 6.28 -83.69 -0.53 1.62 16 19 C -0.12 -1.79 8.66 -39.39 -0.34 -2.13 16 20 C -0.10 -1.19 10.04 -39.61 -0.40 -1.59 16 21 C -0.14 -1.47 10.04 -39.55 -0.40 -1.87 16 22 C -0.10 -1.02 10.04 -39.61 -0.40 -1.42 16 23 C -0.15 -1.68 9.96 -39.39 -0.39 -2.07 16 24 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.13 3.19 5.95 -51.93 -0.31 2.88 16 26 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 27 H 0.09 1.60 5.09 -51.93 -0.26 1.34 16 28 H 0.07 1.19 8.09 -51.93 -0.42 0.77 16 29 H 0.41 4.02 8.82 -40.82 -0.36 3.66 16 30 H 0.14 2.24 6.40 -52.48 -0.34 1.90 16 31 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 LS Contribution 307.30 15.07 4.63 4.63 Total: -1.00 -29.92 307.30 -8.20 -38.13 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -3.75 Total: 5.74 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.56 Total: -5.45 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.57 Total: -32.01 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.73 Total: -19.99 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -4.99 SS G_CDS: -1.35 Total: -6.35 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.92 -8.20 -38.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224463594.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.076 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds