Wall clock time and date at job start Tue Mar 31 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99970 * 2 1 4 4 H 1.48503 * 109.47162 * 95.40328 * 3 2 1 5 5 H 1.48500 * 109.47280 * 215.40792 * 3 2 1 6 6 H 1.48504 * 109.47035 * 335.40898 * 3 2 1 7 7 C 1.38811 * 120.00238 * 180.26884 * 2 1 3 8 8 H 1.08003 * 119.99658 * 34.03203 * 7 2 1 9 9 N 1.36930 * 120.00442 * 214.03220 * 7 2 1 10 10 C 1.47023 * 125.64648 * 9.69211 * 9 7 2 11 11 C 1.54330 * 107.26983 * 181.02548 * 10 9 7 12 12 C 1.55149 * 102.94193 * 22.19304 * 11 10 9 13 13 H 1.08999 * 111.00683 * 82.57122 * 12 11 10 14 14 O 1.42903 * 111.00329 * 206.38718 * 12 11 10 15 15 C 1.36008 * 117.00120 * 203.60649 * 14 12 11 16 16 C 1.38676 * 120.00213 * 354.22661 * 15 14 12 17 17 C 1.38147 * 120.01127 * 179.74089 * 16 15 14 18 18 C 1.38708 * 120.01757 * 0.50641 * 17 16 15 19 19 O 1.35982 * 119.99602 * 179.74653 * 18 17 16 20 20 C 1.38680 * 120.00897 * 359.76933 * 18 17 16 21 21 C 1.38236 * 119.98778 * 359.97438 * 20 18 17 22 22 Cl 1.73603 * 120.01050 * 179.97438 * 21 20 18 23 23 C 1.47422 * 125.65044 * 189.38489 * 9 7 2 24 24 H 0.97000 * 120.00266 * 185.11805 * 1 2 3 25 25 H 1.09004 * 109.88036 * 300.44131 * 10 9 7 26 26 H 1.08999 * 109.88391 * 61.60839 * 10 9 7 27 27 H 1.09005 * 110.71668 * 140.55429 * 11 10 9 28 28 H 1.08998 * 110.71596 * 263.82461 * 11 10 9 29 29 H 1.07995 * 119.99457 * 359.97350 * 16 15 14 30 30 H 1.07993 * 119.98940 * 180.23508 * 17 16 15 31 31 H 0.96703 * 113.99949 * 270.02056 * 19 18 17 32 32 H 1.08001 * 120.00461 * 180.02562 * 20 18 17 33 33 H 1.08994 * 110.36736 * 274.74637 * 23 9 7 34 34 H 1.09003 * 110.36854 * 37.07075 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6118 1.9805 1.3939 5 1 3.4859 1.4759 -0.8112 6 1 1.3951 2.6830 -0.5826 7 6 2.0102 -1.2021 -0.0056 8 1 1.6090 -2.0548 -0.5331 9 7 3.2037 -1.3068 0.6575 10 6 3.7656 -0.3037 1.5738 11 6 5.1295 -0.8391 2.0587 12 6 5.5183 -1.8535 0.9509 13 1 5.9736 -1.3471 0.0998 14 8 6.3858 -2.8659 1.4651 15 6 7.1852 -3.5068 0.5707 16 6 7.0503 -3.2531 -0.7860 17 6 7.8658 -3.9000 -1.6943 18 6 8.8127 -4.8113 -1.2506 19 8 9.6117 -5.4516 -2.1454 20 6 8.9444 -5.0699 0.1055 21 6 8.1321 -4.4188 1.0151 22 17 8.2960 -4.7426 2.7128 23 6 4.1348 -2.4468 0.5759 24 1 -0.4850 -0.8367 0.0749 25 1 3.9039 0.6416 1.0489 26 1 3.0987 -0.1637 2.4245 27 1 5.8611 -0.0333 2.1178 28 1 5.0269 -1.3398 3.0214 29 1 6.3103 -2.5470 -1.1322 30 1 7.7631 -3.6993 -2.7504 31 1 9.2480 -6.2866 -2.4704 32 1 9.6819 -5.7792 0.4510 33 1 3.8474 -3.2229 1.2853 34 1 4.1565 -2.8472 -0.4376 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227445132.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:04 Heat of formation + Delta-G solvation = -24.851661 kcal Electronic energy + Delta-G solvation = -19793.503774 eV Core-core repulsion = 16526.083229 eV Total energy + Delta-G solvation = -3267.420545 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52954 -38.92554 -37.28466 -36.50904 -35.61032 -32.58289 -31.12640 -29.93201 -28.85702 -27.99596 -24.27272 -23.24499 -22.50308 -20.82076 -20.36252 -18.81404 -18.21146 -17.56370 -16.49709 -15.89965 -15.70354 -14.99938 -14.83963 -14.55962 -14.21555 -13.70269 -13.35175 -13.16412 -13.03552 -12.79808 -12.51763 -12.11765 -11.77118 -11.40159 -11.33502 -11.17093 -10.96429 -10.85233 -10.56551 -10.36236 -10.28268 -9.76585 -9.30566 -9.12992 -8.42067 -8.15482 -7.20470 -6.46929 -3.23979 0.88494 1.00766 2.02854 3.07515 3.26331 3.39449 3.48998 3.66396 4.00983 4.55824 4.58065 4.67415 4.84049 4.88929 4.99109 5.12462 5.21833 5.25673 5.36806 5.47850 5.61939 5.73135 5.83119 5.97895 6.08512 6.09544 6.26200 6.30935 6.45044 6.47290 6.69111 7.28605 7.41366 7.62139 8.26452 8.92414 9.49949 10.15872 11.01263 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024777 B = 0.004414 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.815800 B = 6341.598536 C = 6944.950425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.004 4.004 3 Si 1.040 2.960 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.296 1.296 7 C -0.343 4.343 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.125 3.875 11 C -0.121 4.121 12 C 0.059 3.941 13 H 0.086 0.914 14 O -0.290 6.290 15 C 0.145 3.855 16 C -0.182 4.182 17 C -0.095 4.095 18 C 0.069 3.931 19 O -0.494 6.494 20 C -0.100 4.100 21 C -0.060 4.060 22 Cl -0.054 7.054 23 C 0.120 3.880 24 H 0.267 0.733 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.148 0.852 30 H 0.137 0.863 31 H 0.388 0.612 32 H 0.143 0.857 33 H 0.039 0.961 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.488 -9.459 0.021 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.207 4.207 3 Si 0.871 3.129 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.223 1.223 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.000 4.000 11 C -0.159 4.159 12 C 0.002 3.998 13 H 0.104 0.896 14 O -0.202 6.202 15 C 0.097 3.903 16 C -0.200 4.200 17 C -0.114 4.114 18 C 0.024 3.976 19 O -0.303 6.303 20 C -0.119 4.119 21 C -0.087 4.087 22 Cl -0.026 7.026 23 C -0.007 4.007 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.166 0.834 30 H 0.155 0.845 31 H 0.243 0.757 32 H 0.160 0.840 33 H 0.056 0.944 34 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.540 -7.389 0.349 19.962 hybrid contribution -0.053 -1.979 -0.167 1.987 sum 18.487 -9.368 0.182 20.726 Atomic orbital electron populations 1.70898 1.06480 1.29585 1.46820 1.25722 0.95862 1.00563 0.98565 0.84173 0.74916 0.77372 0.76416 1.21791 1.22006 1.22307 1.19933 0.94088 0.99304 1.33616 0.90369 1.44678 1.20826 1.16972 1.50694 1.21597 0.91697 0.92845 0.93848 1.22682 0.97646 0.97160 0.98378 1.24078 0.90135 0.87801 0.97798 0.89636 1.86205 1.50222 1.49731 1.34057 1.18753 0.90294 0.92292 0.88940 1.21323 1.03191 1.04269 0.91254 1.21343 0.93377 0.96069 1.00623 1.18075 0.94054 0.97796 0.87677 1.84884 1.45708 1.39591 1.60149 1.21077 0.98928 1.00142 0.91777 1.19935 1.00154 1.02261 0.86395 1.98368 1.97162 1.94591 1.12435 1.22079 0.87222 0.92142 0.99261 0.92318 0.95293 0.93507 0.90563 0.89884 0.83439 0.84515 0.75704 0.83969 0.94364 0.93382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.46 13.70 55.49 0.76 -26.70 16 2 C 0.00 -0.12 5.35 -17.43 -0.09 -0.22 16 3 Si 1.04 25.66 25.05 -169.99 -4.26 21.40 16 4 H -0.29 -6.72 6.65 56.52 0.38 -6.34 16 5 H -0.29 -6.91 7.10 56.52 0.40 -6.51 16 6 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.34 -9.62 10.34 -15.06 -0.16 -9.78 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.88 16 9 N -0.60 -14.52 3.28 -169.93 -0.56 -15.07 16 10 C 0.13 2.67 5.18 -3.06 -0.02 2.65 16 11 C -0.12 -2.02 6.68 -24.90 -0.17 -2.19 16 12 C 0.06 0.97 2.81 -24.47 -0.07 0.91 16 13 H 0.09 1.34 6.25 -51.93 -0.32 1.01 16 14 O -0.29 -4.57 9.40 -19.76 -0.19 -4.76 16 15 C 0.14 2.05 6.67 -39.22 -0.26 1.78 16 16 C -0.18 -2.33 8.94 -39.45 -0.35 -2.69 16 17 C -0.10 -1.06 9.98 -39.44 -0.39 -1.45 16 18 C 0.07 0.74 6.70 -39.24 -0.26 0.47 16 19 O -0.49 -4.46 13.50 -19.68 -0.27 -4.72 16 20 C -0.10 -1.10 9.76 -39.42 -0.38 -1.48 16 21 C -0.06 -0.77 6.33 -39.38 -0.25 -1.02 16 22 Cl -0.05 -0.69 28.50 -51.86 -1.48 -2.17 16 23 C 0.12 2.37 6.86 -2.41 -0.02 2.36 16 24 H 0.27 8.06 8.73 -40.82 -0.36 7.70 16 25 H 0.03 0.64 3.93 -51.93 -0.20 0.44 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.15 1.92 5.64 -52.49 -0.30 1.62 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.39 1.64 9.06 45.56 0.41 2.05 16 32 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 33 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -31.70 298.06 -6.87 -38.57 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -2.95 Total: -0.38 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -2.42 Total: -10.65 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.20 Total: -41.78 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.45 Total: -9.48 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -4.26 Total: 21.40 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.48 Total: -2.17 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.70 -6.87 -38.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227445132.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.718 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds