Wall clock time and date at job start Tue Mar 31 2020 05:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99982 * 2 1 4 4 H 1.48498 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46962 * 299.99439 * 3 2 1 6 6 H 1.48499 * 109.47410 * 59.99611 * 3 2 1 7 7 C 1.38816 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00238 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99698 * 0.02562 * 7 2 1 10 10 C 1.47420 * 125.65088 * 0.02562 * 9 7 2 11 11 C 1.54910 * 104.83358 * 155.83836 * 10 9 7 12 12 C 1.55158 * 101.57969 * 37.01151 * 11 10 9 13 13 H 1.09005 * 110.72293 * 83.04106 * 12 11 10 14 14 O 1.42904 * 110.72012 * 206.13458 * 12 11 10 15 15 C 1.36023 * 116.99787 * 209.99778 * 14 12 11 16 16 C 1.39144 * 120.07803 * 270.01986 * 15 14 12 17 17 O 1.35993 * 120.06853 * 359.96153 * 16 15 14 18 18 C 1.38556 * 119.86556 * 179.97438 * 16 15 14 19 19 C 1.38275 * 120.01988 * 0.02562 * 18 16 15 20 20 C 1.38203 * 120.15571 * 359.95769 * 19 18 16 21 21 C 1.38378 * 120.13243 * 0.03943 * 20 19 18 22 22 Cl 1.73604 * 120.00878 * 180.25403 * 21 20 19 23 23 C 1.47025 * 125.64584 * 179.97438 * 9 7 2 24 24 H 0.96997 * 120.00165 * 0.02562 * 1 2 3 25 25 H 1.08996 * 110.36994 * 37.00232 * 10 9 7 26 26 H 1.08998 * 110.46503 * 274.72226 * 10 9 7 27 27 H 1.09000 * 111.00910 * 278.93574 * 11 10 9 28 28 H 1.09004 * 111.00936 * 155.08434 * 11 10 9 29 29 H 0.96701 * 114.00064 * 89.99385 * 17 16 15 30 30 H 1.07999 * 119.98622 * 180.02562 * 18 16 15 31 31 H 1.08004 * 119.91855 * 179.97438 * 19 18 16 32 32 H 1.08003 * 119.93358 * 180.02562 * 20 19 18 33 33 H 1.08996 * 109.88654 * 61.67500 * 23 9 7 34 34 H 1.09004 * 109.88295 * 300.50855 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3880 0.0005 10 6 -0.1415 -2.5332 -0.0005 11 6 -0.4012 -3.9321 -0.6130 12 6 0.7784 -4.7524 -0.0273 13 1 0.5439 -5.1010 0.9785 14 8 1.1010 -5.8533 -0.8795 15 6 1.6114 -6.9653 -0.2852 16 6 2.9866 -7.0996 -0.1213 17 8 3.8235 -6.1197 -0.5557 18 6 3.5016 -8.2340 0.4851 19 6 2.6498 -9.2302 0.9257 20 6 1.2838 -9.0975 0.7636 21 6 0.7625 -7.9673 0.1589 22 17 -0.9544 -7.8009 -0.0371 23 6 1.9318 -3.7275 0.0005 24 1 -0.4850 0.8400 -0.0004 25 1 -0.5989 -1.7587 -0.6162 26 1 -0.5298 -2.4866 1.0169 27 1 -0.3508 -3.8977 -1.7013 28 1 -1.3588 -4.3328 -0.2804 29 1 4.0103 -5.4400 0.1063 30 1 4.5686 -8.3401 0.6137 31 1 3.0531 -10.1139 1.3978 32 1 0.6217 -9.8776 1.1094 33 1 2.5277 -3.8647 0.9028 34 1 2.5587 -3.8506 -0.8826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229113451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:57 Heat of formation + Delta-G solvation = -27.977513 kcal Electronic energy + Delta-G solvation = -20169.442414 eV Core-core repulsion = 16901.886322 eV Total energy + Delta-G solvation = -3267.556092 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.38369 -38.08416 -37.11885 -36.10678 -36.02678 -32.33440 -30.31543 -29.69395 -29.01919 -27.16564 -24.54287 -22.88880 -22.63968 -20.35803 -20.21060 -18.73049 -17.54587 -17.04951 -16.53845 -16.01337 -15.03914 -14.88693 -14.66782 -14.29298 -14.20624 -13.43673 -13.03077 -12.76698 -12.60090 -12.47141 -11.98936 -11.74929 -11.48550 -11.37825 -11.03267 -10.95902 -10.80448 -10.77246 -10.46377 -10.11662 -9.83501 -9.60571 -9.40335 -8.82487 -8.71343 -8.65666 -6.88629 -5.68746 -3.11146 0.86508 0.91675 2.04419 3.17067 3.38751 3.44065 3.46710 3.78520 4.05510 4.47122 4.67679 4.88293 5.02182 5.18739 5.29348 5.35865 5.43627 5.48303 5.65207 5.74973 5.86734 6.01267 6.09397 6.26871 6.34550 6.41677 6.51211 6.60289 6.68829 7.43821 7.46270 7.58861 7.76798 7.84806 8.31335 9.17551 9.78270 10.41771 11.35486 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026736 B = 0.004708 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.034765 B = 5945.882562 C = 6817.203805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.916 3.084 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.152 3.848 11 C -0.135 4.135 12 C 0.081 3.919 13 H 0.065 0.935 14 O -0.309 6.309 15 C 0.090 3.910 16 C 0.103 3.897 17 O -0.481 6.481 18 C -0.132 4.132 19 C -0.104 4.104 20 C -0.112 4.112 21 C -0.046 4.046 22 Cl -0.052 7.052 23 C 0.118 3.882 24 H 0.253 0.747 25 H 0.113 0.887 26 H 0.015 0.985 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.393 0.607 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.017 0.983 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -18.398 2.982 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.174 4.174 12 C 0.026 3.974 13 H 0.083 0.917 14 O -0.226 6.226 15 C 0.044 3.956 16 C 0.057 3.943 17 O -0.292 6.292 18 C -0.151 4.151 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.073 4.073 22 Cl -0.023 7.023 23 C -0.009 4.009 24 H 0.063 0.937 25 H 0.130 0.870 26 H 0.033 0.967 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.251 0.749 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.155 0.845 33 H 0.035 0.965 34 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.381 -18.417 2.254 18.707 hybrid contribution 0.362 1.064 0.682 1.315 sum 2.743 -17.353 2.937 17.813 Atomic orbital electron populations 1.69776 1.04937 1.24802 1.57545 1.24798 0.95738 0.97764 1.02257 0.85978 0.78649 0.83468 0.77272 1.20487 1.21651 1.21738 1.19124 0.90568 0.82233 1.43203 0.90307 1.44366 1.01905 0.99430 1.87011 1.21979 0.84808 0.92029 0.98412 1.23191 0.95054 0.97594 1.01575 1.23631 0.97041 0.84247 0.92457 0.91696 1.86217 1.81475 1.21339 1.33534 1.18928 0.90153 0.89255 0.97298 1.18698 0.87740 0.91004 0.96832 1.84887 1.64838 1.37144 1.42317 1.21479 1.01063 0.93962 0.98588 1.20958 0.92280 0.99079 0.99952 1.21000 0.95868 0.96533 0.99680 1.21341 0.85808 0.97244 1.02915 1.98383 1.10096 1.97700 1.96100 1.21737 0.94179 0.86623 0.98355 0.93666 0.86964 0.96715 0.90829 0.91747 0.74902 0.84475 0.84531 0.84476 0.96531 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 2 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 3 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.22 -6.20 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 9 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 10 C 0.15 3.74 5.89 -2.53 -0.01 3.72 16 11 C -0.14 -2.72 6.81 -24.58 -0.17 -2.89 16 12 C 0.08 1.53 3.51 -24.90 -0.09 1.44 16 13 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 14 O -0.31 -5.60 9.03 -34.31 -0.31 -5.91 16 15 C 0.09 1.38 5.60 -39.10 -0.22 1.16 16 16 C 0.10 1.42 6.72 -39.13 -0.26 1.16 16 17 O -0.48 -6.87 12.57 -34.22 -0.43 -7.30 16 18 C -0.13 -1.39 9.98 -39.45 -0.39 -1.79 16 19 C -0.10 -0.95 10.04 -39.58 -0.40 -1.34 16 20 C -0.11 -1.16 9.82 -39.54 -0.39 -1.55 16 21 C -0.05 -0.61 6.33 -39.39 -0.25 -0.86 16 22 Cl -0.05 -0.70 28.50 -51.86 -1.48 -2.18 16 23 C 0.12 2.47 5.92 -3.06 -0.02 2.46 16 24 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.11 3.07 5.87 -51.93 -0.31 2.77 16 26 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.39 4.55 8.05 45.56 0.37 4.92 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.37 16 32 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 33 H 0.02 0.33 7.92 -51.93 -0.41 -0.08 16 34 H 0.04 0.94 7.66 -51.93 -0.40 0.54 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -31.33 303.01 -8.38 -39.71 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -3.24 Total: 1.61 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.45 Total: -5.22 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.02 Total: -42.22 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.74 Total: -13.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.33 -8.38 -39.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229113451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.736 kcal (2) G-P(sol) polarization free energy of solvation -31.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds