Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48500 * 109.47458 * 90.00122 * 3 2 1 5 5 H 1.48500 * 109.47309 * 209.99972 * 3 2 1 6 6 H 1.48503 * 109.47139 * 329.99977 * 3 2 1 7 7 C 1.37872 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00195 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99981 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.47484 * 110.99698 * 265.96875 * 10 9 7 12 12 C 1.53514 * 87.93268 * 221.29493 * 11 10 9 13 13 O 1.42896 * 114.17319 * 272.38068 * 12 11 10 14 14 C 1.35996 * 117.00020 * 250.56904 * 13 12 11 15 15 C 1.38560 * 120.06347 * 5.80577 * 14 13 12 16 16 C 1.38338 * 119.98466 * 179.76869 * 15 14 13 17 17 Cl 1.73602 * 119.93901 * 180.23558 * 16 15 14 18 18 C 1.38360 * 120.11953 * 0.51134 * 16 15 14 19 19 C 1.38231 * 120.13433 * 359.74479 * 18 16 15 20 20 C 1.38564 * 120.01026 * 0.02562 * 19 18 16 21 21 O 1.36014 * 120.05726 * 179.97438 * 20 19 18 22 22 C 1.47479 * 111.00095 * 169.99906 * 10 9 7 23 23 H 0.96998 * 119.99889 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46824 * 299.99337 * 9 7 2 25 25 H 1.09004 * 109.46866 * 59.99776 * 9 7 2 26 26 H 1.08997 * 113.48073 * 336.06452 * 11 10 9 27 27 H 1.09000 * 113.47549 * 106.53239 * 11 10 9 28 28 H 1.09003 * 114.34187 * 139.68073 * 12 11 10 29 29 H 1.08002 * 120.00595 * 0.02562 * 15 14 13 30 30 H 1.08005 * 119.93053 * 179.72351 * 18 16 15 31 31 H 1.08001 * 119.99906 * 179.97438 * 19 18 16 32 32 H 0.96704 * 113.99805 * 270.01905 * 21 20 19 33 33 H 1.08991 * 113.47672 * 253.47056 * 22 10 9 34 34 H 1.09003 * 113.47336 * 23.87848 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2680 -3.0454 1.3734 12 6 5.5417 -3.7154 0.8390 13 8 5.3425 -5.0419 0.3466 14 6 5.8646 -6.0589 1.0833 15 6 6.4476 -5.7972 2.3127 16 6 6.9739 -6.8335 3.0629 17 17 7.6986 -6.5050 4.6059 18 6 6.9290 -8.1305 2.5832 19 6 6.3533 -8.3965 1.3549 20 6 5.8202 -7.3633 0.6011 21 8 5.2540 -7.6238 -0.6079 22 6 5.4558 -2.6254 -0.2386 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6798 -0.8895 25 1 3.8745 -0.6808 0.8905 26 1 4.4653 -2.2359 2.0762 27 1 3.5270 -3.7541 1.7431 28 1 6.4063 -3.6256 1.4967 29 1 6.4874 -4.7849 2.6871 30 1 7.3448 -8.9366 3.1694 31 1 6.3197 -9.4096 0.9823 32 1 5.8732 -7.5816 -1.3495 33 1 5.7213 -2.9781 -1.2351 34 1 5.9699 -1.7034 0.0331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229546835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -8.138786 kcal Electronic energy + Delta-G solvation = -19403.432295 eV Core-core repulsion = 16136.736474 eV Total energy + Delta-G solvation = -3266.695820 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84067 -39.45898 -37.31688 -37.09445 -35.98673 -32.80992 -30.66956 -30.14289 -29.10428 -25.91329 -25.55134 -23.33391 -22.67456 -21.28096 -19.79581 -18.91287 -17.72528 -16.81804 -16.56135 -15.96368 -15.85629 -15.13072 -14.92734 -14.63307 -14.32127 -13.82531 -13.48278 -13.33716 -13.05626 -12.74245 -12.49857 -12.26963 -12.20177 -11.43183 -11.33496 -11.22491 -11.06325 -10.79579 -10.56517 -10.27531 -10.07019 -9.82822 -9.38595 -9.06743 -8.60491 -8.28689 -8.05122 -6.06691 -4.04603 0.75580 1.02423 1.83052 2.95446 3.21258 3.23986 3.32057 3.32718 3.97339 4.38384 4.43829 4.52053 4.55443 4.70148 4.84447 5.02860 5.21828 5.23342 5.33545 5.52293 5.62026 5.68060 5.85171 5.90556 5.93243 5.97080 6.11126 6.28952 6.39096 6.61489 7.18554 7.24822 7.58460 7.63581 7.77083 8.60466 9.04993 9.53704 11.06763 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.003693 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.548737 B = 7580.509262 C = 8222.862803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.268 1.268 6 H -0.284 1.284 7 C -0.507 4.507 8 H 0.081 0.919 9 C 0.125 3.875 10 N -0.443 5.443 11 C -0.006 4.006 12 C 0.039 3.961 13 O -0.259 6.259 14 C 0.128 3.872 15 C -0.193 4.193 16 C -0.002 4.002 17 Cl -0.068 7.068 18 C -0.140 4.140 19 C -0.095 4.095 20 C 0.078 3.922 21 O -0.480 6.480 22 C -0.002 4.002 23 H 0.264 0.736 24 H 0.030 0.970 25 H -0.004 1.004 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.146 0.854 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.388 0.612 33 H 0.088 0.912 34 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.235 -14.654 5.065 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.203 1.203 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.099 0.901 9 C -0.002 4.002 10 N -0.165 5.165 11 C -0.135 4.135 12 C -0.018 4.018 13 O -0.170 6.170 14 C 0.081 3.919 15 C -0.212 4.212 16 C -0.029 4.029 17 Cl -0.039 7.039 18 C -0.159 4.159 19 C -0.114 4.114 20 C 0.032 3.968 21 O -0.289 6.289 22 C -0.131 4.131 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.014 0.986 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.164 0.836 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.244 0.756 33 H 0.107 0.893 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 18.003 -14.880 4.879 23.860 hybrid contribution 1.329 1.803 0.584 2.315 sum 19.332 -13.076 5.463 23.970 Atomic orbital electron populations 1.69896 1.06122 1.26835 1.50901 1.24929 0.94769 0.98809 0.94891 0.86864 0.80319 0.84117 0.78447 1.20290 1.19287 1.21002 1.20954 0.88441 0.94894 1.50271 0.90098 1.20779 0.98376 0.85376 0.95669 1.69076 1.09645 1.23324 1.14454 1.24278 0.95772 0.99317 0.94157 1.23793 0.98916 0.80620 0.98443 1.86325 1.70878 1.13117 1.46715 1.19435 0.93134 0.88685 0.90691 1.21098 1.04795 1.00381 0.94936 1.20634 0.99620 0.94354 0.88294 1.98377 1.81696 1.95801 1.27992 1.20791 1.03173 0.95068 0.96832 1.21173 0.96684 0.99170 0.94376 1.17816 1.00664 0.88893 0.89434 1.84949 1.37804 1.92057 1.14109 1.24054 0.93995 0.95400 0.99664 0.92611 0.95251 0.98586 0.90374 0.89365 0.89370 0.83649 0.84482 0.83804 0.75622 0.89319 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.92 13.96 55.43 0.77 -27.15 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.80 9.94 -34.44 -0.34 -15.15 16 8 H 0.08 2.63 8.06 -52.48 -0.42 2.20 16 9 C 0.13 3.02 3.64 -4.97 -0.02 3.01 16 10 N -0.44 -9.42 6.32 -246.10 -1.55 -10.98 16 11 C -0.01 -0.10 7.55 -7.54 -0.06 -0.16 16 12 C 0.04 0.57 4.07 -26.20 -0.11 0.47 16 13 O -0.26 -4.08 9.97 -34.25 -0.34 -4.42 16 14 C 0.13 1.71 6.69 -39.13 -0.26 1.45 16 15 C -0.19 -2.26 8.80 -39.43 -0.35 -2.61 16 16 C 0.00 -0.02 6.32 -39.50 -0.25 -0.27 16 17 Cl -0.07 -0.66 28.95 -51.86 -1.50 -2.16 16 18 C -0.14 -1.28 9.82 -39.54 -0.39 -1.67 16 19 C -0.10 -0.90 9.98 -39.46 -0.39 -1.29 16 20 C 0.08 0.93 6.72 -39.13 -0.26 0.67 16 21 O -0.48 -5.76 13.29 -34.31 -0.46 -6.21 16 22 C 0.00 -0.03 7.52 -7.54 -0.06 -0.09 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.03 0.71 7.14 -51.93 -0.37 0.34 16 25 H 0.00 -0.08 6.73 -51.93 -0.35 -0.43 16 26 H 0.08 1.30 7.42 -51.93 -0.39 0.92 16 27 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.09 1.01 5.91 -51.93 -0.31 0.71 16 29 H 0.15 1.59 5.89 -52.49 -0.31 1.28 16 30 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.39 2.77 9.07 45.56 0.41 3.18 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 LS Contribution 306.05 15.07 4.61 4.61 Total: -1.00 -33.70 306.05 -8.72 -42.42 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.00 Total: 0.95 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -2.58 Total: -13.76 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: -0.78 Total: -38.13 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: -0.80 Total: -10.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.70 -8.72 -42.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229546835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.282 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds