Wall clock time and date at job start Tue Mar 31 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48500 * 109.47458 * 90.00122 * 3 2 1 5 5 H 1.48500 * 109.47309 * 209.99972 * 3 2 1 6 6 H 1.48503 * 109.47139 * 329.99977 * 3 2 1 7 7 C 1.37872 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00195 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99981 * 180.02562 * 7 2 1 10 10 N 1.46900 * 109.47050 * 179.97438 * 9 7 2 11 11 C 1.47484 * 110.99698 * 265.96875 * 10 9 7 12 12 C 1.53514 * 87.93268 * 221.29493 * 11 10 9 13 13 O 1.42896 * 114.17319 * 272.38068 * 12 11 10 14 14 C 1.35996 * 117.00020 * 250.56904 * 13 12 11 15 15 C 1.38560 * 120.06347 * 5.80577 * 14 13 12 16 16 C 1.38338 * 119.98466 * 179.76869 * 15 14 13 17 17 Cl 1.73602 * 119.93901 * 180.23558 * 16 15 14 18 18 C 1.38360 * 120.11953 * 0.51134 * 16 15 14 19 19 C 1.38231 * 120.13433 * 359.74479 * 18 16 15 20 20 C 1.38564 * 120.01026 * 0.02562 * 19 18 16 21 21 O 1.36014 * 120.05726 * 179.97438 * 20 19 18 22 22 C 1.47479 * 111.00095 * 169.99906 * 10 9 7 23 23 H 0.96998 * 119.99889 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.46824 * 299.99337 * 9 7 2 25 25 H 1.09004 * 109.46866 * 59.99776 * 9 7 2 26 26 H 1.08997 * 113.48073 * 336.06452 * 11 10 9 27 27 H 1.09000 * 113.47549 * 106.53239 * 11 10 9 28 28 H 1.09003 * 114.34187 * 139.68073 * 12 11 10 29 29 H 1.08002 * 120.00595 * 0.02562 * 15 14 13 30 30 H 1.08005 * 119.93053 * 179.72351 * 18 16 15 31 31 H 1.08001 * 119.99906 * 179.97438 * 19 18 16 32 32 H 0.96704 * 113.99805 * 270.01905 * 21 20 19 33 33 H 1.08991 * 113.47672 * 253.47056 * 22 10 9 34 34 H 1.09003 * 113.47336 * 23.87848 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 4.2680 -3.0454 1.3734 12 6 5.5417 -3.7154 0.8390 13 8 5.3425 -5.0419 0.3466 14 6 5.8646 -6.0589 1.0833 15 6 6.4476 -5.7972 2.3127 16 6 6.9739 -6.8335 3.0629 17 17 7.6986 -6.5050 4.6059 18 6 6.9290 -8.1305 2.5832 19 6 6.3533 -8.3965 1.3549 20 6 5.8202 -7.3633 0.6011 21 8 5.2540 -7.6238 -0.6079 22 6 5.4558 -2.6254 -0.2386 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6798 -0.8895 25 1 3.8745 -0.6808 0.8905 26 1 4.4653 -2.2359 2.0762 27 1 3.5270 -3.7541 1.7431 28 1 6.4063 -3.6256 1.4967 29 1 6.4874 -4.7849 2.6871 30 1 7.3448 -8.9366 3.1694 31 1 6.3197 -9.4096 0.9823 32 1 5.8732 -7.5816 -1.3495 33 1 5.7213 -2.9781 -1.2351 34 1 5.9699 -1.7034 0.0331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229546835.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:46 Heat of formation + Delta-G solvation = -34.614591 kcal Electronic energy + Delta-G solvation = -19404.580372 eV Core-core repulsion = 16136.736474 eV Total energy + Delta-G solvation = -3267.843897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.91234 -40.59161 -38.22223 -38.12673 -36.81815 -34.96048 -31.89331 -31.43035 -30.13483 -27.56750 -26.92565 -24.45301 -23.54242 -22.98928 -20.97658 -19.85832 -18.99125 -18.69059 -17.53590 -17.13253 -16.88483 -16.47494 -16.15600 -15.97112 -15.55295 -14.98487 -14.85961 -14.59314 -14.43984 -14.08523 -13.62584 -13.51687 -13.38114 -12.93619 -12.79424 -12.33630 -12.14234 -12.00221 -11.79427 -11.64411 -11.62039 -11.52975 -11.37318 -10.81904 -9.88634 -9.62011 -9.18377 -8.31291 -6.36797 -0.05538 0.19540 1.04366 1.32653 1.36343 1.46996 1.94024 2.32479 2.40500 3.00737 3.17330 3.21096 3.26127 3.64407 3.82375 3.94035 4.06460 4.32479 4.35673 4.36368 4.52318 4.57301 4.59906 4.70415 4.80297 4.84717 4.87115 5.12477 5.16399 5.44868 5.51146 5.68453 5.93045 6.24094 6.53928 6.69587 6.84850 7.26738 8.86468 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024100 B = 0.003693 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.548737 B = 7580.509262 C = 8222.862803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.262 1.262 5 H -0.244 1.244 6 H -0.282 1.282 7 C -0.524 4.524 8 H 0.023 0.977 9 C 0.136 3.864 10 N -0.488 5.488 11 C -0.013 4.013 12 C 0.062 3.938 13 O -0.287 6.287 14 C 0.098 3.902 15 C -0.195 4.195 16 C -0.011 4.011 17 Cl -0.060 7.060 18 C -0.128 4.128 19 C -0.088 4.088 20 C 0.065 3.935 21 O -0.500 6.500 22 C 0.002 3.998 23 H 0.268 0.732 24 H 0.032 0.968 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.062 0.938 28 H 0.127 0.873 29 H 0.151 0.849 30 H 0.165 0.835 31 H 0.172 0.828 32 H 0.406 0.594 33 H 0.092 0.908 34 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.470 -14.578 5.870 27.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.780 3.220 4 H -0.187 1.187 5 H -0.167 1.167 6 H -0.207 1.207 7 C -0.562 4.562 8 H 0.041 0.959 9 C 0.009 3.991 10 N -0.211 5.211 11 C -0.142 4.142 12 C 0.005 3.995 13 O -0.200 6.200 14 C 0.051 3.949 15 C -0.214 4.214 16 C -0.038 4.038 17 Cl -0.031 7.031 18 C -0.147 4.147 19 C -0.106 4.106 20 C 0.020 3.980 21 O -0.312 6.312 22 C -0.127 4.127 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.030 0.970 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.168 0.832 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 21.271 -14.838 5.680 26.550 hybrid contribution 0.280 1.566 0.354 1.630 sum 21.551 -13.272 6.035 26.020 Atomic orbital electron populations 1.70081 1.08476 1.28319 1.52334 1.26018 0.95728 1.03647 0.94010 0.85570 0.79427 0.77621 0.79430 1.18671 1.16707 1.20722 1.21234 0.91528 0.92942 1.50515 0.95894 1.20543 0.94728 0.87681 0.96174 1.68951 1.13649 1.21514 1.16969 1.24354 0.97134 0.99707 0.93050 1.23608 0.98063 0.80181 0.97626 1.86276 1.72071 1.13810 1.47808 1.19699 0.94900 0.88627 0.91625 1.21146 1.04640 1.01083 0.94540 1.20773 0.99742 0.94716 0.88585 1.98382 1.81508 1.95836 1.27412 1.21155 1.01733 0.95251 0.96579 1.21462 0.95467 0.99739 0.93971 1.18155 1.00936 0.89142 0.89785 1.84888 1.39295 1.92044 1.15001 1.24148 0.90666 0.97176 1.00669 0.92325 0.94953 0.96982 0.88871 0.91963 0.85530 0.83166 0.81762 0.81047 0.73567 0.88943 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.25 13.96 21.45 0.30 -60.95 16 2 C 0.00 0.17 5.47 84.65 0.46 0.63 16 3 Si 0.96 43.77 27.47 68.60 1.88 45.65 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.24 -10.12 6.54 99.48 0.65 -9.47 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.52 -31.74 9.94 25.60 0.25 -31.49 16 8 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 9 C 0.14 6.55 3.64 85.56 0.31 6.86 16 10 N -0.49 -20.92 6.32 -932.90 -5.89 -26.82 16 11 C -0.01 -0.47 7.55 83.58 0.63 0.16 16 12 C 0.06 1.73 4.07 30.94 0.13 1.86 16 13 O -0.29 -8.99 9.97 -79.62 -0.79 -9.78 16 14 C 0.10 2.54 6.69 22.56 0.15 2.69 16 15 C -0.19 -4.27 8.80 22.37 0.20 -4.07 16 16 C -0.01 -0.21 6.32 22.32 0.14 -0.07 16 17 Cl -0.06 -1.04 28.95 -2.72 -0.08 -1.12 16 18 C -0.13 -1.98 9.82 22.30 0.22 -1.76 16 19 C -0.09 -1.44 9.98 22.35 0.22 -1.21 16 20 C 0.07 1.50 6.72 22.56 0.15 1.65 16 21 O -0.50 -11.78 13.29 -79.82 -1.06 -12.84 16 22 C 0.00 0.06 7.52 83.58 0.63 0.69 16 23 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 24 H 0.03 1.52 7.14 -2.39 -0.02 1.50 16 25 H 0.01 0.55 6.73 -2.39 -0.02 0.54 16 26 H 0.09 3.00 7.42 -2.39 -0.02 2.98 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.13 2.55 5.91 -2.39 -0.01 2.54 16 29 H 0.15 2.99 5.89 -2.91 -0.02 2.97 16 30 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 32 H 0.41 5.59 9.07 -74.05 -0.67 4.92 16 33 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 34 H 0.11 2.66 7.91 -2.39 -0.02 2.64 16 Total: -1.00 -76.86 306.05 -1.73 -78.60 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.41 Total: 11.32 kcal Atomic # 6 Polarization: -27.56 SS G_CDS: 3.50 Total: -24.06 kcal Atomic # 7 Polarization: -82.17 SS G_CDS: -5.59 Total: -87.77 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.85 Total: -22.62 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -0.08 Total: -1.12 kcal Total: -76.86 -1.73 -78.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229546835.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.982 kcal (2) G-P(sol) polarization free energy of solvation -76.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds