Wall clock time and date at job start Tue Mar 31 2020 05:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39807 * 120.01426 * 172.85176 * 3 2 1 5 5 C 1.37597 * 120.03192 * 180.29653 * 4 3 2 6 6 C 1.39572 * 120.05195 * 359.45589 * 5 4 3 7 7 C 1.48122 * 119.99311 * 180.29150 * 6 5 4 8 8 C 1.39384 * 120.16205 * 64.97434 * 7 6 5 9 9 C 1.37977 * 119.93389 * 179.75071 * 8 7 6 10 10 C 1.38468 * 120.28372 * 0.52975 * 9 8 7 11 11 C 1.38115 * 120.34200 * 359.74529 * 10 9 8 12 12 C 1.38753 * 120.05354 * 359.97438 * 11 10 9 13 13 O 1.35648 * 120.13781 * 179.97438 * 12 11 10 14 14 C 1.34803 * 117.00112 * 354.40512 * 13 12 11 15 15 H 1.08002 * 120.00061 * 5.05704 * 14 13 12 16 16 C 1.38659 * 120.00214 * 185.06084 * 14 13 12 17 17 N 1.31554 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47190 * 119.99784 * 18 16 14 21 21 H 1.48503 * 109.47295 * 240.00205 * 18 16 14 22 22 C 1.39767 * 120.02336 * 0.54606 * 6 5 4 23 23 F 1.35094 * 120.01192 * 179.74665 * 22 6 5 24 24 C 1.37880 * 119.97213 * 359.73168 * 22 6 5 25 25 H 1.08000 * 119.98510 * 0.03044 * 4 3 2 26 26 H 1.07997 * 119.98093 * 179.72671 * 5 4 3 27 27 H 1.08002 * 120.03318 * 0.02729 * 8 7 6 28 28 H 1.07999 * 119.85627 * 180.30454 * 9 8 7 29 29 H 1.07996 * 119.82995 * 179.77199 * 10 9 8 30 30 H 1.07992 * 119.96821 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99741 * 179.97438 * 17 16 14 32 32 H 1.08002 * 120.02856 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2668 1.2021 -0.1506 5 6 4.6427 1.2024 -0.1568 6 6 5.3426 0.0049 -0.0013 7 6 6.8238 0.0076 -0.0017 8 6 7.5233 0.6550 1.0154 9 6 8.9030 0.6501 1.0132 10 6 9.5974 0.0137 -0.0017 11 6 8.9161 -0.6265 -1.0183 12 6 7.5286 -0.6354 -1.0270 13 8 6.8577 -1.2632 -2.0248 14 6 7.5937 -1.7597 -3.0392 15 1 8.6721 -1.7211 -2.9934 16 6 6.9663 -2.3199 -4.1416 17 7 5.6528 -2.3673 -4.1972 18 14 7.9862 -3.0072 -5.5476 19 1 9.4293 -2.8342 -5.2430 20 1 7.6862 -4.4518 -5.7166 21 1 7.6538 -2.2827 -6.8005 22 6 4.6463 -1.1976 0.1494 23 9 5.3240 -2.3572 0.2947 24 6 3.2675 -1.1997 0.1500 25 1 2.7263 2.1300 -0.2665 26 1 5.1817 2.1305 -0.2777 27 1 6.9857 1.1561 1.8068 28 1 9.4437 1.1479 1.8045 29 1 10.6774 0.0176 0.0018 30 1 9.4638 -1.1206 -1.8071 31 1 5.2139 -2.7589 -4.9686 32 1 2.7286 -2.1283 0.2668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236532130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:52 Heat of formation + Delta-G solvation = 9.022878 kcal Electronic energy + Delta-G solvation = -20860.237590 eV Core-core repulsion = 17473.258499 eV Total energy + Delta-G solvation = -3386.979090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.30232 -39.51669 -38.56610 -36.57149 -36.12882 -32.57193 -32.23256 -30.50454 -29.37467 -28.55012 -25.46510 -24.11799 -22.54873 -21.54845 -20.94340 -18.98616 -18.06833 -17.31310 -16.26239 -15.81787 -15.61380 -15.16932 -14.70481 -14.49184 -14.14599 -13.80962 -13.74230 -13.70441 -13.56660 -13.21961 -12.91149 -12.69253 -12.41763 -11.86012 -11.75862 -11.69202 -11.43990 -11.21286 -10.96394 -10.82890 -10.69620 -10.49040 -9.48063 -8.94663 -8.85365 -8.52864 -8.06266 -7.31272 -6.53667 -4.12029 0.79536 1.44325 1.96987 2.27124 2.71530 3.03906 3.08007 3.09281 3.14752 3.85518 3.88888 3.98429 4.40305 4.69696 4.96212 4.98416 5.03545 5.10916 5.14918 5.49817 5.54980 5.68551 5.81061 5.93740 6.10870 6.18207 6.22989 6.34745 6.50580 6.56747 6.70596 6.95448 6.96739 7.12476 7.24707 7.28781 7.53463 7.66993 7.89211 8.91214 9.57435 10.62954 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.006830 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.701421 B = 4098.794769 C = 5727.666004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.268 3.732 3 C -0.020 4.020 4 C -0.083 4.083 5 C -0.087 4.087 6 C -0.003 4.003 7 C -0.156 4.156 8 C -0.050 4.050 9 C -0.218 4.218 10 C -0.063 4.063 11 C -0.233 4.233 12 C 0.173 3.827 13 O -0.161 6.161 14 C -0.394 4.394 15 H 0.094 0.906 16 C 0.043 3.957 17 N -0.852 5.852 18 Si 0.940 3.060 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.127 3.873 23 F -0.122 7.122 24 C -0.106 4.106 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.116 0.884 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.271 0.729 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.773 5.541 7.672 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.105 5.105 2 C -0.047 4.047 3 C -0.024 4.024 4 C -0.103 4.103 5 C -0.105 4.105 6 C -0.005 4.005 7 C -0.158 4.158 8 C -0.068 4.068 9 C -0.237 4.237 10 C -0.082 4.082 11 C -0.252 4.252 12 C 0.117 3.883 13 O -0.063 6.063 14 C -0.470 4.470 15 H 0.111 0.889 16 C -0.162 4.162 17 N -0.486 5.486 18 Si 0.765 3.235 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.108 3.892 23 F -0.100 7.100 24 C -0.127 4.127 25 H 0.152 0.848 26 H 0.158 0.842 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.407 5.339 7.450 9.175 hybrid contribution 1.199 -0.690 -0.848 1.622 sum 0.792 4.649 6.602 8.113 Atomic orbital electron populations 1.81208 1.12030 1.07674 1.09584 1.25610 0.92510 0.93395 0.93208 1.15621 0.84114 0.94362 1.08255 1.20995 0.94064 0.96466 0.98808 1.21011 0.92927 0.97592 0.99015 1.18920 0.93317 0.91733 0.96531 1.17600 0.89856 1.09145 0.99182 1.20671 0.93896 0.96471 0.95773 1.20509 0.93778 1.07967 1.01413 1.20865 0.98692 0.95223 0.93378 1.21126 0.93816 1.07879 1.02382 1.19287 0.90466 0.89627 0.88894 1.83947 1.34932 1.60429 1.26968 1.21392 0.91163 1.38826 0.95605 0.88897 1.25286 0.96152 0.96861 0.97936 1.70044 1.07722 1.40946 1.29892 0.85661 0.79268 0.78725 0.79883 1.19035 1.20083 1.20079 1.17436 0.88926 0.81965 1.00889 1.91547 1.79989 1.45949 1.92485 1.20916 0.92438 0.98111 1.01232 0.84759 0.84206 0.86648 0.87279 0.87305 0.85230 0.91934 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.93 18.54 41.84 0.78 -6.16 16 2 C 0.27 3.92 15.32 -22.48 -0.34 3.57 16 3 C -0.02 -0.28 5.74 -106.82 -0.61 -0.90 16 4 C -0.08 -1.06 9.73 -39.23 -0.38 -1.45 16 5 C -0.09 -1.26 9.71 -39.32 -0.38 -1.64 16 6 C 0.00 -0.06 4.96 -104.77 -0.52 -0.58 16 7 C -0.16 -3.02 5.01 -104.74 -0.52 -3.55 16 8 C -0.05 -0.81 9.73 -39.25 -0.38 -1.19 16 9 C -0.22 -3.42 10.03 -39.59 -0.40 -3.82 16 10 C -0.06 -1.07 10.03 -39.54 -0.40 -1.47 16 11 C -0.23 -4.74 9.16 -39.44 -0.36 -5.11 16 12 C 0.17 3.90 6.44 -38.71 -0.25 3.65 16 13 O -0.16 -4.28 8.96 0.44 0.00 -4.27 16 14 C -0.39 -10.44 9.49 30.89 0.29 -10.15 16 15 H 0.09 2.28 5.21 -52.49 -0.27 2.01 16 16 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 17 N -0.85 -23.94 13.67 55.48 0.76 -23.18 16 18 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 22 C 0.13 2.36 6.95 -39.14 -0.27 2.09 16 23 F -0.12 -2.55 16.65 2.25 0.04 -2.51 16 24 C -0.11 -1.66 9.72 -39.15 -0.38 -2.04 16 25 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 26 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 27 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 31 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.14 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 303.69 15.07 4.58 4.58 Total: -1.00 -29.84 303.69 -6.12 -35.95 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.24 Total: 2.33 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -5.01 Total: -21.53 kcal Atomic # 7 Polarization: -30.88 SS G_CDS: 1.53 Total: -29.34 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: 0.00 Total: -4.27 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.84 -6.12 -35.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236532130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.977 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds