Wall clock time and date at job start Tue Mar 31 2020 05:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39807 * 120.01426 * 172.85176 * 3 2 1 5 5 C 1.37597 * 120.03192 * 180.29653 * 4 3 2 6 6 C 1.39572 * 120.05195 * 359.45589 * 5 4 3 7 7 C 1.48122 * 119.99311 * 180.29150 * 6 5 4 8 8 C 1.39384 * 120.16205 * 64.97434 * 7 6 5 9 9 C 1.37977 * 119.93389 * 179.75071 * 8 7 6 10 10 C 1.38468 * 120.28372 * 0.52975 * 9 8 7 11 11 C 1.38115 * 120.34200 * 359.74529 * 10 9 8 12 12 C 1.38753 * 120.05354 * 359.97438 * 11 10 9 13 13 O 1.35648 * 120.13781 * 179.97438 * 12 11 10 14 14 C 1.34803 * 117.00112 * 354.40512 * 13 12 11 15 15 H 1.08002 * 120.00061 * 5.05704 * 14 13 12 16 16 C 1.38659 * 120.00214 * 185.06084 * 14 13 12 17 17 N 1.31554 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00233 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47029 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47190 * 119.99784 * 18 16 14 21 21 H 1.48503 * 109.47295 * 240.00205 * 18 16 14 22 22 C 1.39767 * 120.02336 * 0.54606 * 6 5 4 23 23 F 1.35094 * 120.01192 * 179.74665 * 22 6 5 24 24 C 1.37880 * 119.97213 * 359.73168 * 22 6 5 25 25 H 1.08000 * 119.98510 * 0.03044 * 4 3 2 26 26 H 1.07997 * 119.98093 * 179.72671 * 5 4 3 27 27 H 1.08002 * 120.03318 * 0.02729 * 8 7 6 28 28 H 1.07999 * 119.85627 * 180.30454 * 9 8 7 29 29 H 1.07996 * 119.82995 * 179.77199 * 10 9 8 30 30 H 1.07992 * 119.96821 * 179.97438 * 11 10 9 31 31 H 0.97003 * 119.99741 * 179.97438 * 17 16 14 32 32 H 1.08002 * 120.02856 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2668 1.2021 -0.1506 5 6 4.6427 1.2024 -0.1568 6 6 5.3426 0.0049 -0.0013 7 6 6.8238 0.0076 -0.0017 8 6 7.5233 0.6550 1.0154 9 6 8.9030 0.6501 1.0132 10 6 9.5974 0.0137 -0.0017 11 6 8.9161 -0.6265 -1.0183 12 6 7.5286 -0.6354 -1.0270 13 8 6.8577 -1.2632 -2.0248 14 6 7.5937 -1.7597 -3.0392 15 1 8.6721 -1.7211 -2.9934 16 6 6.9663 -2.3199 -4.1416 17 7 5.6528 -2.3673 -4.1972 18 14 7.9862 -3.0072 -5.5476 19 1 9.4293 -2.8342 -5.2430 20 1 7.6862 -4.4518 -5.7166 21 1 7.6538 -2.2827 -6.8005 22 6 4.6463 -1.1976 0.1494 23 9 5.3240 -2.3572 0.2947 24 6 3.2675 -1.1997 0.1500 25 1 2.7263 2.1300 -0.2665 26 1 5.1817 2.1305 -0.2777 27 1 6.9857 1.1561 1.8068 28 1 9.4437 1.1479 1.8045 29 1 10.6774 0.0176 0.0018 30 1 9.4638 -1.1206 -1.8071 31 1 5.2139 -2.7589 -4.9686 32 1 2.7286 -2.1283 0.2668 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236532130.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:51 Heat of formation + Delta-G solvation = -6.682642 kcal Electronic energy + Delta-G solvation = -20860.918632 eV Core-core repulsion = 17473.258499 eV Total energy + Delta-G solvation = -3387.660133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.78581 -40.96306 -39.92433 -38.09226 -37.41980 -34.28988 -33.70441 -31.71796 -30.79630 -29.98518 -27.32017 -25.41714 -23.81617 -23.06779 -22.33128 -20.25095 -19.77689 -18.91176 -17.60013 -17.22807 -16.95593 -16.65615 -16.30277 -16.07009 -15.54053 -15.41494 -15.03304 -14.96546 -14.94967 -14.56202 -14.38092 -14.15038 -13.71212 -13.53893 -13.11385 -13.02809 -12.89308 -12.58071 -12.40879 -12.31077 -12.13124 -12.04266 -11.16744 -10.78525 -10.13239 -9.81290 -9.43874 -8.88170 -8.43567 -6.09410 -0.44510 0.21974 0.56094 0.80274 1.36299 1.43725 1.51216 1.52836 1.80869 2.18130 2.62286 2.77522 2.87240 3.18892 3.44808 3.51936 3.69701 3.81638 4.03106 4.23562 4.30958 4.33126 4.56700 4.66402 4.72977 4.88679 5.04938 5.10600 5.16410 5.17113 5.29262 5.34084 5.64154 5.68437 5.79956 5.82305 6.04361 6.26081 6.34238 7.01532 7.81471 8.77976 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.012914 B = 0.006830 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.701421 B = 4098.794769 C = 5727.666004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.287 3.713 3 C -0.016 4.016 4 C -0.061 4.061 5 C -0.082 4.082 6 C -0.027 4.027 7 C -0.159 4.159 8 C -0.049 4.049 9 C -0.194 4.194 10 C -0.064 4.064 11 C -0.253 4.253 12 C 0.133 3.867 13 O -0.209 6.209 14 C -0.411 4.411 15 H 0.099 0.901 16 C -0.016 4.016 17 N -0.910 5.910 18 Si 1.010 2.990 19 H -0.252 1.252 20 H -0.273 1.273 21 H -0.269 1.269 22 C 0.091 3.909 23 F -0.148 7.148 24 C -0.107 4.107 25 H 0.176 0.824 26 H 0.168 0.832 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.270 0.730 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.828 8.043 9.295 12.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.028 4.028 3 C -0.020 4.020 4 C -0.081 4.081 5 C -0.100 4.100 6 C -0.028 4.028 7 C -0.160 4.160 8 C -0.067 4.067 9 C -0.212 4.212 10 C -0.082 4.082 11 C -0.272 4.272 12 C 0.081 3.919 13 O -0.114 6.114 14 C -0.487 4.487 15 H 0.116 0.884 16 C -0.215 4.215 17 N -0.547 5.547 18 Si 0.831 3.169 19 H -0.176 1.176 20 H -0.198 1.198 21 H -0.195 1.195 22 C 0.071 3.929 23 F -0.127 7.127 24 C -0.128 4.128 25 H 0.194 0.806 26 H 0.185 0.815 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.161 0.839 30 H 0.134 0.866 31 H 0.079 0.921 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.685 7.873 9.126 12.073 hybrid contribution 0.938 -1.255 -1.016 1.867 sum 1.622 6.618 8.110 10.593 Atomic orbital electron populations 1.81240 1.12663 1.08439 1.10394 1.25460 0.92201 0.92650 0.92440 1.15660 0.83857 0.94458 1.07985 1.21424 0.93571 0.97357 0.95754 1.21318 0.93595 0.97236 0.97823 1.19152 0.93033 0.92767 0.97871 1.18057 0.91057 1.08167 0.98708 1.21190 0.94541 0.95505 0.95421 1.21116 0.93774 1.05257 1.01032 1.21271 1.00523 0.94053 0.92388 1.21262 0.93336 1.09016 1.03593 1.19923 0.91807 0.90842 0.89322 1.83928 1.35824 1.63354 1.28333 1.21788 0.91677 1.38974 0.96295 0.88391 1.26404 0.97317 0.97272 1.00466 1.70182 1.09638 1.43871 1.31026 0.84636 0.78172 0.77798 0.76332 1.17570 1.19833 1.19452 1.17812 0.89984 0.81614 1.03443 1.91468 1.80670 1.47454 1.93064 1.21022 0.91598 0.99364 1.00835 0.80647 0.81452 0.82750 0.82825 0.83935 0.86558 0.92103 0.83361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.95 18.54 19.00 0.35 -13.60 16 2 C 0.29 7.92 15.32 88.33 1.35 9.28 16 3 C -0.02 -0.43 5.74 -21.29 -0.12 -0.55 16 4 C -0.06 -1.38 9.73 22.50 0.22 -1.16 16 5 C -0.08 -2.16 9.71 22.44 0.22 -1.94 16 6 C -0.03 -0.94 4.96 -19.96 -0.10 -1.04 16 7 C -0.16 -6.04 5.01 -19.94 -0.10 -6.14 16 8 C -0.05 -1.42 9.73 22.48 0.22 -1.20 16 9 C -0.19 -5.19 10.03 22.26 0.22 -4.97 16 10 C -0.06 -2.01 10.03 22.30 0.22 -1.78 16 11 C -0.25 -10.40 9.16 22.36 0.20 -10.20 16 12 C 0.13 6.18 6.44 22.83 0.15 6.32 16 13 O -0.21 -11.79 8.96 -21.35 -0.19 -11.99 16 14 C -0.41 -23.06 9.49 67.92 0.64 -22.42 16 15 H 0.10 5.10 5.21 -2.91 -0.02 5.09 16 16 C -0.02 -0.89 5.49 84.84 0.47 -0.42 16 17 N -0.91 -54.20 13.67 21.61 0.30 -53.90 16 18 Si 1.01 42.22 29.55 68.60 2.03 44.25 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 20 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.83 7.11 99.48 0.71 -10.13 16 22 C 0.09 3.47 6.95 22.55 0.16 3.63 16 23 F -0.15 -6.64 16.65 44.97 0.75 -5.89 16 24 C -0.11 -3.40 9.72 22.55 0.22 -3.18 16 25 H 0.18 2.57 8.06 -2.91 -0.02 2.55 16 26 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 27 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 28 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.12 4.95 5.64 -2.91 -0.02 4.94 16 31 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 32 H 0.15 4.29 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -71.00 303.69 8.38 -62.62 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.18 Total: 14.27 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 3.97 Total: -35.77 kcal Atomic # 7 Polarization: -68.15 SS G_CDS: 0.65 Total: -67.50 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.19 Total: -11.99 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.75 Total: -5.89 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -71.00 8.38 -62.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236532130.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.938 kcal (2) G-P(sol) polarization free energy of solvation -71.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds