Wall clock time and date at job start Tue Mar 31 2020 06:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33018 * 124.98106 * 2 1 4 4 C 1.39722 * 113.85616 * 180.02562 * 3 2 1 5 5 C 1.47811 * 123.02440 * 179.97438 * 4 3 2 6 6 C 1.40101 * 119.50799 * 130.02346 * 5 4 3 7 7 C 1.35915 * 121.18449 * 180.02562 * 6 5 4 8 8 C 1.41098 * 120.12047 * 0.02963 * 7 6 5 9 9 C 1.40358 * 120.47864 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99768 * 205.44294 * 9 8 7 11 11 C 1.40212 * 120.00375 * 25.43477 * 9 8 7 12 12 N 1.30698 * 119.99629 * 16.95166 * 11 9 8 13 13 Si 1.86798 * 120.00310 * 196.94853 * 11 9 8 14 14 H 1.48504 * 109.47049 * 265.18356 * 13 11 9 15 15 H 1.48497 * 109.47139 * 25.18685 * 13 11 9 16 16 H 1.48499 * 109.47136 * 145.18567 * 13 11 9 17 17 C 1.46671 * 119.04054 * 0.24744 * 8 7 6 18 18 C 1.43200 * 120.56187 * 179.70759 * 17 8 7 19 19 N 7.51157 * 121.39189 * 335.88491 * 2 1 3 20 20 C 1.39027 * 118.87610 * 359.44568 * 17 8 7 21 21 C 1.35960 * 113.94697 * 0.26720 * 4 3 2 22 22 C 1.50698 * 124.81421 * 179.72982 * 21 4 3 23 23 S 1.70631 * 110.36328 * 359.59194 * 21 4 3 24 24 H 1.09001 * 109.47117 * 89.99916 * 1 2 3 25 25 H 1.09002 * 109.47284 * 210.00382 * 1 2 3 26 26 H 1.08998 * 109.47340 * 329.99895 * 1 2 3 27 27 H 1.07995 * 123.07461 * 0.05961 * 3 2 1 28 28 H 1.07999 * 119.41030 * 0.04699 * 6 5 4 29 29 H 1.08000 * 119.93979 * 179.97438 * 7 6 5 30 30 H 0.97005 * 119.99480 * 179.97438 * 12 11 9 31 31 H 1.07998 * 120.10306 * 180.23654 * 20 17 8 32 32 H 1.08991 * 109.46922 * 90.00375 * 22 21 4 33 33 H 1.09004 * 109.46635 * 210.00274 * 22 21 4 34 34 H 1.08998 * 109.46978 * 329.99598 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2696 1.0899 0.0000 4 6 3.6405 0.8203 -0.0006 5 6 4.6701 1.8809 -0.0012 6 6 5.7138 1.8300 0.9320 7 6 6.6782 2.7873 0.9622 8 6 6.6416 3.8584 0.0444 9 6 7.6333 4.8513 0.0692 10 1 7.4173 5.8397 -0.3088 11 6 8.9042 4.5602 0.5850 12 7 9.2803 3.3173 0.7329 13 14 10.0597 5.9487 1.0605 14 1 10.9726 6.2432 -0.0732 15 1 9.2679 7.1620 1.3866 16 1 10.8573 5.5448 2.2462 17 6 5.5489 3.9224 -0.9319 18 6 5.4765 4.9983 -1.8742 19 7 5.4197 5.8525 -2.6198 20 6 4.5877 2.9179 -0.9307 21 6 3.9423 -0.5054 -0.0068 22 6 5.3396 -1.0697 -0.0146 23 16 2.5143 -1.4394 -0.0007 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5138 27 1 1.8660 2.0916 0.0009 28 1 5.7530 1.0154 1.6399 29 1 7.4734 2.7285 1.6905 30 1 10.1598 3.1160 1.0893 31 1 3.7767 2.9434 -1.6434 32 1 5.6806 -1.2097 1.0111 33 1 5.3410 -2.0290 -0.5322 34 1 6.0076 -0.3786 -0.5286 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240431227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:45 Heat of formation + Delta-G solvation = 52.595153 kcal Electronic energy + Delta-G solvation = -18423.974405 eV Core-core repulsion = 15605.097926 eV Total energy + Delta-G solvation = -2818.876479 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.61840 -36.99088 -35.11090 -34.14367 -32.71490 -30.14519 -29.94803 -28.90919 -26.17554 -24.04289 -22.37287 -22.12197 -20.71495 -18.43776 -17.73556 -16.61112 -16.47581 -15.54935 -14.65310 -14.19273 -14.09726 -13.73090 -13.24189 -13.07855 -12.91514 -12.86430 -12.64953 -12.50744 -12.01939 -11.88648 -11.74232 -11.60289 -11.49205 -11.31982 -11.12509 -11.02555 -10.88465 -10.53386 -10.44988 -9.88687 -9.81507 -9.55391 -8.18596 -8.07276 -7.75376 -7.32619 -7.17293 -4.74089 1.35524 1.98800 2.17688 2.40988 2.54987 2.87516 2.88310 2.95608 3.34840 3.64668 3.90821 4.17781 4.42179 5.08361 5.33208 5.36757 5.41836 5.45761 5.57481 5.68090 5.83277 5.93999 5.97884 6.07415 6.09361 6.31140 6.45109 6.50545 6.62935 6.73689 6.84963 6.95094 7.04273 7.21694 7.52844 7.64742 7.80568 7.85345 8.19022 8.37221 8.53074 8.80994 9.67341 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.023648 B = 0.004492 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.764239 B = 6232.102840 C = 7057.728655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.208 4.208 3 C -0.117 4.117 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.052 4.052 7 C -0.167 4.167 8 C 0.156 3.844 9 C -0.423 4.423 10 H 0.087 0.913 11 C 0.076 3.924 12 N -0.757 5.757 13 Si 0.915 3.085 14 H -0.265 1.265 15 H -0.255 1.255 16 H -0.269 1.269 17 C -0.190 4.190 18 C 0.301 3.699 19 N -0.510 5.510 20 C -0.003 4.003 21 C -0.228 4.228 22 C -0.073 4.073 23 S 0.110 5.890 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.291 0.709 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -8.777 3.433 11.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.325 4.325 3 C -0.148 4.148 4 C -0.033 4.033 5 C -0.182 4.182 6 C -0.072 4.072 7 C -0.186 4.186 8 C 0.150 3.850 9 C -0.450 4.450 10 H 0.105 0.895 11 C -0.148 4.148 12 N -0.379 5.379 13 Si 0.738 3.262 14 H -0.190 1.190 15 H -0.178 1.178 16 H -0.194 1.194 17 C -0.196 4.196 18 C -0.009 4.009 19 N -0.189 5.189 20 C -0.025 4.025 21 C -0.346 4.346 22 C -0.131 4.131 23 S 0.376 5.624 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.112 0.888 29 H 0.143 0.857 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.202 -9.184 2.351 11.906 hybrid contribution 1.000 1.702 0.488 2.033 sum -6.202 -7.483 2.839 10.125 Atomic orbital electron populations 1.20246 0.88530 1.02525 1.02147 1.24189 0.99421 0.96034 1.12856 1.20251 0.92700 0.98841 1.02985 1.18049 0.92659 0.91877 1.00697 1.17396 0.98983 0.97712 1.04132 1.20451 0.93145 0.97255 0.96334 1.20881 0.99838 0.96684 1.01202 1.18469 0.88554 0.91170 0.86803 1.19768 0.94914 0.98708 1.31565 0.89526 1.26139 0.99328 0.96951 0.92409 1.69742 1.20155 1.19853 1.28128 0.86144 0.79537 0.81308 0.79231 1.18959 1.17823 1.19369 1.16753 1.05309 0.96401 1.01176 1.25745 0.91114 0.92177 0.91823 1.80987 1.11827 1.12507 1.13615 1.20498 0.95146 0.91391 0.95433 1.24072 0.99780 0.96710 1.13989 1.20238 0.90795 1.00049 1.02038 1.82604 0.95862 1.09801 1.74109 0.91365 0.91895 0.90971 0.84579 0.88818 0.85731 0.89730 0.88364 0.91578 0.92626 0.89822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.36 36.00 0.37 -0.41 16 2 C -0.21 -2.90 6.47 -36.12 -0.23 -3.13 16 3 C -0.12 -1.87 9.77 -40.84 -0.40 -2.27 16 4 C -0.02 -0.37 5.36 -106.24 -0.57 -0.94 16 5 C -0.18 -3.56 5.12 -104.81 -0.54 -4.09 16 6 C -0.05 -1.07 8.26 -39.72 -0.33 -1.39 16 7 C -0.17 -3.74 8.62 -39.33 -0.34 -4.08 16 8 C 0.16 3.71 5.73 -104.61 -0.60 3.11 16 9 C -0.42 -10.17 8.55 -38.04 -0.33 -10.50 16 10 H 0.09 2.12 7.38 -52.49 -0.39 1.73 16 11 C 0.08 1.68 5.15 -17.29 -0.09 1.59 16 12 N -0.76 -16.92 10.96 55.56 0.61 -16.31 16 13 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 16 14 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 15 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 16 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 17 C -0.19 -4.36 5.93 -104.28 -0.62 -4.98 16 18 C 0.30 7.09 14.29 -22.50 -0.32 6.77 16 19 N -0.51 -12.35 18.53 41.81 0.77 -11.57 16 20 C 0.00 -0.07 9.29 -38.82 -0.36 -0.43 16 21 C -0.23 -3.70 6.31 -35.13 -0.22 -3.92 16 22 C -0.07 -1.08 8.96 36.00 0.32 -0.76 16 23 S 0.11 1.51 23.02 -107.50 -2.47 -0.96 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.09 1.75 7.36 -52.49 -0.39 1.36 16 29 H 0.12 2.83 6.20 -52.49 -0.33 2.50 16 30 H 0.29 5.81 8.29 -40.82 -0.34 5.48 16 31 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.07 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.39 7.17 -51.93 -0.37 1.02 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -25.12 314.62 -9.18 -34.30 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.55 Total: 3.39 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -4.25 Total: -25.43 kcal Atomic # 7 Polarization: -29.26 SS G_CDS: 1.38 Total: -27.88 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -25.12 -9.18 -34.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240431227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.900 kcal (2) G-P(sol) polarization free energy of solvation -25.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds