Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45485 * 60.56278 * 3 2 1 5 5 C 1.37693 * 120.18659 * 179.97438 * 4 3 2 6 6 C 1.39847 * 121.17280 * 0.02562 * 5 4 3 7 7 C 1.48258 * 119.54222 * 180.02562 * 6 5 4 8 8 C 1.39434 * 120.05846 * 0.02562 * 7 6 5 9 9 C 1.37916 * 119.96783 * 179.97438 * 8 7 6 10 10 C 1.38791 * 120.09448 * 359.97438 * 9 8 7 11 11 O 1.35902 * 119.93401 * 180.02562 * 10 9 8 12 12 C 1.39031 * 120.12701 * 0.02562 * 10 9 8 13 13 F 1.35098 * 119.98998 * 179.97438 * 12 10 9 14 14 C 1.38073 * 120.02311 * 359.74216 * 12 10 9 15 15 C 1.38638 * 120.91823 * 359.97438 * 6 5 4 16 16 C 1.40593 * 119.73358 * 359.70947 * 15 6 5 17 17 C 1.40842 * 120.55333 * 180.27785 * 16 15 6 18 18 H 1.07994 * 120.00227 * 149.80292 * 17 16 15 19 19 C 1.40232 * 120.00194 * 329.80476 * 17 16 15 20 20 N 1.30659 * 120.00032 * 162.28133 * 19 17 16 21 21 Si 1.86802 * 119.99839 * 342.28840 * 19 17 16 22 22 H 1.48502 * 109.47179 * 95.42532 * 21 19 17 23 23 H 1.48504 * 109.46890 * 215.42262 * 21 19 17 24 24 H 1.48497 * 109.47139 * 335.42144 * 21 19 17 25 25 H 1.08000 * 119.90648 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.41281 * 179.97438 * 5 4 3 27 27 H 1.07991 * 120.01781 * 359.94809 * 8 7 6 28 28 H 1.07999 * 119.94860 * 180.02562 * 9 8 7 29 29 H 0.96704 * 114.00228 * 90.00505 * 11 10 9 30 30 H 1.08001 * 120.04312 * 180.25248 * 14 12 10 31 31 H 1.08003 * 120.13354 * 180.02562 * 15 6 5 32 32 H 0.97006 * 120.00053 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2758 -0.5904 -1.0480 5 6 4.6527 -0.5862 -1.0426 6 6 5.3707 0.0039 0.0024 7 6 6.8529 -0.0118 -0.0289 8 6 7.5227 -0.6112 -1.0948 9 6 8.9015 -0.6242 -1.1223 10 6 9.6236 -0.0410 -0.0905 11 8 10.9822 -0.0552 -0.1211 12 6 8.9598 0.5578 0.9743 13 9 9.6655 1.1242 1.9775 14 6 7.5796 0.5780 1.0046 15 6 4.7158 0.6042 1.0667 16 6 3.3104 0.6277 1.0969 17 6 2.6274 1.2381 2.1668 18 1 1.6605 1.6901 2.0025 19 6 3.2029 1.2589 3.4454 20 7 2.7647 2.0985 4.3455 21 14 4.5962 0.0863 3.8617 22 1 5.8976 0.7731 3.6619 23 1 4.4753 -0.3430 5.2782 24 1 4.5232 -1.1034 2.9760 25 1 2.7419 -1.0516 -1.8657 26 1 5.1877 -1.0475 -1.8596 27 1 6.9620 -1.0654 -1.8984 28 1 9.4199 -1.0882 -1.9483 29 1 11.3738 0.7103 -0.5637 30 1 7.0636 1.0466 1.8295 31 1 5.2829 1.0565 1.8668 32 1 3.1625 2.1126 5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240787019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -22.540884 kcal Electronic energy + Delta-G solvation = -20496.781955 eV Core-core repulsion = 17108.434158 eV Total energy + Delta-G solvation = -3388.347798 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.81382 -39.68378 -38.19158 -36.68666 -35.20392 -34.10276 -31.65069 -31.22385 -30.34068 -28.07349 -25.88223 -23.77029 -22.86204 -21.35245 -20.86742 -18.75520 -17.95736 -17.82221 -16.82668 -16.42539 -15.97781 -15.49010 -15.12039 -14.63389 -14.37807 -14.17568 -13.50598 -13.44178 -13.16734 -12.92746 -12.75318 -12.55124 -12.36215 -12.04675 -11.79553 -11.60358 -11.45244 -11.16581 -11.04637 -10.68675 -10.59962 -10.18596 -9.97771 -9.51114 -9.08941 -8.76821 -8.06181 -7.47420 -7.37126 -4.92142 0.71657 1.18804 1.97800 2.36599 2.84264 2.97570 3.06955 3.41749 3.65295 3.76121 3.92858 4.08729 4.30507 4.32312 4.74817 4.88012 5.11049 5.17241 5.20694 5.33548 5.59612 5.68774 5.90450 5.96746 6.10704 6.13957 6.25223 6.30364 6.51322 6.71866 6.77858 6.86256 7.16009 7.25536 7.43472 7.47552 7.61642 7.89245 8.15608 8.29833 8.64791 9.61387 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.005990 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.569105 B = 4673.557800 C = 6064.837583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.295 3.705 3 C -0.163 4.163 4 C -0.015 4.015 5 C -0.238 4.238 6 C 0.004 3.996 7 C -0.004 4.004 8 C -0.107 4.107 9 C -0.115 4.115 10 C 0.056 3.944 11 O -0.490 6.490 12 C 0.077 3.923 13 F -0.136 7.136 14 C -0.141 4.141 15 C -0.211 4.211 16 C 0.124 3.876 17 C -0.412 4.412 18 H 0.099 0.901 19 C 0.083 3.917 20 N -0.772 5.772 21 Si 0.904 3.096 22 H -0.262 1.262 23 H -0.281 1.281 24 H -0.234 1.234 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.387 0.613 30 H 0.144 0.856 31 H 0.112 0.888 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.911 -3.001 -6.759 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.016 4.016 3 C -0.168 4.168 4 C -0.036 4.036 5 C -0.257 4.257 6 C 0.003 3.997 7 C -0.004 4.004 8 C -0.125 4.125 9 C -0.134 4.134 10 C 0.011 3.989 11 O -0.300 6.300 12 C 0.057 3.943 13 F -0.114 7.114 14 C -0.160 4.160 15 C -0.230 4.230 16 C 0.118 3.882 17 C -0.438 4.438 18 H 0.117 0.883 19 C -0.142 4.142 20 N -0.392 5.392 21 Si 0.728 3.272 22 H -0.187 1.187 23 H -0.208 1.208 24 H -0.156 1.156 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.159 0.841 28 H 0.155 0.845 29 H 0.243 0.757 30 H 0.162 0.838 31 H 0.130 0.870 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.046 -3.353 -6.136 13.928 hybrid contribution 1.234 0.334 0.442 1.353 sum 13.280 -3.019 -5.694 14.761 Atomic orbital electron populations 1.81047 1.12644 1.12796 1.10770 1.25665 0.92624 0.91725 0.91565 1.16936 0.83470 1.13931 1.02506 1.20508 0.93576 0.94586 0.94950 1.20140 0.93119 1.11641 1.00809 1.18306 0.89023 0.97119 0.95268 1.18974 0.93607 0.95042 0.92768 1.21284 0.93211 0.99426 0.98603 1.21209 0.94123 1.00272 0.97788 1.18436 0.83359 1.02334 0.94768 1.84863 1.15452 1.48500 1.81150 1.17992 0.89779 0.98818 0.87702 1.91483 1.78634 1.82729 1.58595 1.21412 0.91377 1.02159 1.01047 1.21082 0.93909 1.08246 0.99791 1.18351 0.90538 0.88074 0.91220 1.19685 1.05398 1.26986 0.91765 0.88279 1.26377 0.97237 0.94592 0.95999 1.69585 1.36646 1.27288 1.05708 0.86412 0.79688 0.82578 0.78479 1.18739 1.20753 1.15630 0.87381 0.87340 0.84145 0.84506 0.75741 0.83837 0.87013 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.53 18.54 41.84 0.78 -10.76 16 2 C 0.29 6.57 14.36 -22.47 -0.32 6.25 16 3 C -0.16 -3.43 5.95 -104.12 -0.62 -4.05 16 4 C -0.02 -0.27 9.74 -39.28 -0.38 -0.66 16 5 C -0.24 -3.95 9.37 -39.18 -0.37 -4.32 16 6 C 0.00 0.07 5.86 -105.03 -0.62 -0.55 16 7 C 0.00 -0.06 5.88 -104.89 -0.62 -0.67 16 8 C -0.11 -1.36 9.41 -39.25 -0.37 -1.73 16 9 C -0.12 -1.32 9.97 -39.49 -0.39 -1.72 16 10 C 0.06 0.74 6.71 -39.08 -0.26 0.47 16 11 O -0.49 -5.59 13.36 -19.43 -0.26 -5.84 16 12 C 0.08 1.16 7.30 -39.35 -0.29 0.87 16 13 F -0.14 -2.14 17.10 2.25 0.04 -2.10 16 14 C -0.14 -2.28 9.38 -39.20 -0.37 -2.65 16 15 C -0.21 -4.33 6.53 -38.55 -0.25 -4.58 16 16 C 0.12 2.78 5.26 -104.68 -0.55 2.23 16 17 C -0.41 -10.11 9.02 -37.85 -0.34 -10.45 16 18 H 0.10 2.66 7.67 -52.49 -0.40 2.25 16 19 C 0.08 1.94 5.42 -17.30 -0.09 1.85 16 20 N -0.77 -18.63 13.92 55.56 0.77 -17.86 16 21 Si 0.90 18.40 24.53 -169.99 -4.17 14.23 16 22 H -0.26 -5.00 6.04 56.52 0.34 -4.66 16 23 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.23 -4.83 6.84 56.52 0.39 -4.45 16 25 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 26 H 0.11 1.45 6.09 -52.48 -0.32 1.13 16 27 H 0.14 1.48 6.12 -52.49 -0.32 1.16 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.39 2.48 9.06 45.56 0.41 2.89 16 30 H 0.14 2.43 5.45 -52.49 -0.29 2.14 16 31 H 0.11 2.26 2.91 -52.48 -0.15 2.11 16 32 H 0.30 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 289.27 15.07 4.36 4.36 Total: -1.00 -26.83 289.27 -5.45 -32.28 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -1.12 Total: 5.40 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -5.84 Total: -19.71 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 1.55 Total: -28.62 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.26 Total: -5.84 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -4.17 Total: 14.23 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -26.83 -5.45 -32.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240787019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.740 kcal (2) G-P(sol) polarization free energy of solvation -26.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds