Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39591 * 120.45485 * 60.56278 * 3 2 1 5 5 C 1.37693 * 120.18659 * 179.97438 * 4 3 2 6 6 C 1.39847 * 121.17280 * 0.02562 * 5 4 3 7 7 C 1.48258 * 119.54222 * 180.02562 * 6 5 4 8 8 C 1.39434 * 120.05846 * 0.02562 * 7 6 5 9 9 C 1.37916 * 119.96783 * 179.97438 * 8 7 6 10 10 C 1.38791 * 120.09448 * 359.97438 * 9 8 7 11 11 O 1.35902 * 119.93401 * 180.02562 * 10 9 8 12 12 C 1.39031 * 120.12701 * 0.02562 * 10 9 8 13 13 F 1.35098 * 119.98998 * 179.97438 * 12 10 9 14 14 C 1.38073 * 120.02311 * 359.74216 * 12 10 9 15 15 C 1.38638 * 120.91823 * 359.97438 * 6 5 4 16 16 C 1.40593 * 119.73358 * 359.70947 * 15 6 5 17 17 C 1.40842 * 120.55333 * 180.27785 * 16 15 6 18 18 H 1.07994 * 120.00227 * 149.80292 * 17 16 15 19 19 C 1.40232 * 120.00194 * 329.80476 * 17 16 15 20 20 N 1.30659 * 120.00032 * 162.28133 * 19 17 16 21 21 Si 1.86802 * 119.99839 * 342.28840 * 19 17 16 22 22 H 1.48502 * 109.47179 * 95.42532 * 21 19 17 23 23 H 1.48504 * 109.46890 * 215.42262 * 21 19 17 24 24 H 1.48497 * 109.47139 * 335.42144 * 21 19 17 25 25 H 1.08000 * 119.90648 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.41281 * 179.97438 * 5 4 3 27 27 H 1.07991 * 120.01781 * 359.94809 * 8 7 6 28 28 H 1.07999 * 119.94860 * 180.02562 * 9 8 7 29 29 H 0.96704 * 114.00228 * 90.00505 * 11 10 9 30 30 H 1.08001 * 120.04312 * 180.25248 * 14 12 10 31 31 H 1.08003 * 120.13354 * 180.02562 * 15 6 5 32 32 H 0.97006 * 120.00053 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2758 -0.5904 -1.0480 5 6 4.6527 -0.5862 -1.0426 6 6 5.3707 0.0039 0.0024 7 6 6.8529 -0.0118 -0.0289 8 6 7.5227 -0.6112 -1.0948 9 6 8.9015 -0.6242 -1.1223 10 6 9.6236 -0.0410 -0.0905 11 8 10.9822 -0.0552 -0.1211 12 6 8.9598 0.5578 0.9743 13 9 9.6655 1.1242 1.9775 14 6 7.5796 0.5780 1.0046 15 6 4.7158 0.6042 1.0667 16 6 3.3104 0.6277 1.0969 17 6 2.6274 1.2381 2.1668 18 1 1.6605 1.6901 2.0025 19 6 3.2029 1.2589 3.4454 20 7 2.7647 2.0985 4.3455 21 14 4.5962 0.0863 3.8617 22 1 5.8976 0.7731 3.6619 23 1 4.4753 -0.3430 5.2782 24 1 4.5232 -1.1034 2.9760 25 1 2.7419 -1.0516 -1.8657 26 1 5.1877 -1.0475 -1.8596 27 1 6.9620 -1.0654 -1.8984 28 1 9.4199 -1.0882 -1.9483 29 1 11.3738 0.7103 -0.5637 30 1 7.0636 1.0466 1.8295 31 1 5.2829 1.0565 1.8668 32 1 3.1625 2.1126 5.2301 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240787019.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = -38.859684 kcal Electronic energy + Delta-G solvation = -20497.489592 eV Core-core repulsion = 17108.434158 eV Total energy + Delta-G solvation = -3389.055434 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.95482 -40.80941 -39.54062 -37.86941 -36.89353 -35.75342 -33.00204 -32.67842 -31.55708 -29.34180 -27.51279 -25.04896 -24.08705 -22.69274 -22.29379 -19.82191 -19.51478 -19.27814 -18.12468 -17.57852 -17.04887 -16.97980 -16.37016 -15.96518 -15.77092 -15.49406 -14.80517 -14.71604 -14.64593 -14.52116 -14.21397 -13.96132 -13.73504 -13.53671 -13.16231 -13.09538 -12.97576 -12.77357 -12.44847 -12.09400 -11.94424 -11.71131 -11.41516 -11.11425 -10.28490 -9.88400 -9.64678 -9.10445 -8.83389 -6.70203 -0.51083 0.14038 0.57664 0.81581 1.20033 1.32806 1.43076 1.96948 1.99320 2.12489 2.55417 2.70193 2.96570 3.31099 3.47924 3.49201 3.66812 3.80965 4.16188 4.19438 4.24314 4.51632 4.63616 4.80664 4.83287 4.96123 5.03997 5.11208 5.18976 5.25062 5.39652 5.61472 5.71555 5.76570 5.91465 6.00866 6.18794 6.47455 6.57056 6.74166 6.88788 7.96288 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017457 B = 0.005990 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.569105 B = 4673.557800 C = 6064.837583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.301 3.699 3 C -0.180 4.180 4 C -0.010 4.010 5 C -0.209 4.209 6 C 0.013 3.987 7 C -0.032 4.032 8 C -0.087 4.087 9 C -0.103 4.103 10 C 0.074 3.926 11 O -0.497 6.497 12 C 0.051 3.949 13 F -0.147 7.147 14 C -0.154 4.154 15 C -0.234 4.234 16 C 0.119 3.881 17 C -0.460 4.460 18 H 0.055 0.945 19 C 0.054 3.946 20 N -0.822 5.822 21 Si 0.950 3.050 22 H -0.248 1.248 23 H -0.275 1.275 24 H -0.237 1.237 25 H 0.145 0.855 26 H 0.161 0.839 27 H 0.174 0.826 28 H 0.178 0.822 29 H 0.412 0.588 30 H 0.122 0.878 31 H 0.107 0.893 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.523 -5.519 -10.451 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C -0.008 4.008 3 C -0.186 4.186 4 C -0.030 4.030 5 C -0.227 4.227 6 C 0.012 3.988 7 C -0.032 4.032 8 C -0.104 4.104 9 C -0.121 4.121 10 C 0.028 3.972 11 O -0.310 6.310 12 C 0.031 3.969 13 F -0.126 7.126 14 C -0.173 4.173 15 C -0.253 4.253 16 C 0.113 3.887 17 C -0.488 4.488 18 H 0.073 0.927 19 C -0.166 4.166 20 N -0.446 5.446 21 Si 0.772 3.228 22 H -0.173 1.173 23 H -0.201 1.201 24 H -0.160 1.160 25 H 0.163 0.837 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.195 0.805 29 H 0.272 0.728 30 H 0.140 0.860 31 H 0.124 0.876 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 15.672 -5.853 -9.849 19.413 hybrid contribution 0.357 1.028 1.264 1.667 sum 16.029 -4.825 -8.585 18.812 Atomic orbital electron populations 1.81025 1.13488 1.13887 1.11767 1.26024 0.93054 0.90987 0.90784 1.17280 0.82911 1.14924 1.03490 1.20947 0.94302 0.93227 0.94514 1.20766 0.92709 1.08508 1.00755 1.18652 0.90826 0.95120 0.94204 1.18890 0.92110 0.97688 0.94496 1.21612 0.93894 0.97295 0.97627 1.21590 0.93635 0.98912 0.97958 1.18612 0.84152 1.00487 0.93917 1.84800 1.14516 1.49980 1.81734 1.18221 0.89581 1.00410 0.88662 1.91450 1.78701 1.83147 1.59308 1.21343 0.92102 1.02749 1.01060 1.21102 0.92945 1.09914 1.01291 1.18482 0.91649 0.87632 0.90904 1.19513 1.04668 1.30864 0.93752 0.92714 1.26952 0.98851 0.95320 0.95441 1.69618 1.39025 1.29392 1.06531 0.85726 0.78074 0.80810 0.78239 1.17309 1.20146 1.16007 0.83713 0.82180 0.80841 0.80465 0.72846 0.85972 0.87566 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.06 18.54 19.00 0.35 -24.71 16 2 C 0.30 13.68 14.36 88.33 1.27 14.95 16 3 C -0.18 -7.52 5.95 -19.54 -0.12 -7.64 16 4 C -0.01 -0.30 9.74 22.47 0.22 -0.08 16 5 C -0.21 -5.79 9.37 22.53 0.21 -5.58 16 6 C 0.01 0.42 5.86 -20.13 -0.12 0.31 16 7 C -0.03 -0.88 5.88 -20.04 -0.12 -1.00 16 8 C -0.09 -1.64 9.41 22.48 0.21 -1.43 16 9 C -0.10 -1.69 9.97 22.33 0.22 -1.47 16 10 C 0.07 1.60 6.71 22.59 0.15 1.75 16 11 O -0.50 -9.05 13.36 -92.45 -1.23 -10.28 16 12 C 0.05 1.42 7.30 22.42 0.16 1.59 16 13 F -0.15 -4.50 17.10 44.97 0.77 -3.73 16 14 C -0.15 -4.72 9.38 22.52 0.21 -4.51 16 15 C -0.23 -9.55 6.53 22.94 0.15 -9.40 16 16 C 0.12 5.48 5.26 -19.90 -0.10 5.38 16 17 C -0.46 -24.42 9.02 23.39 0.21 -24.21 16 18 H 0.05 3.27 7.67 -2.91 -0.02 3.24 16 19 C 0.05 2.71 5.42 85.35 0.46 3.17 16 20 N -0.82 -42.99 13.92 21.87 0.30 -42.69 16 21 Si 0.95 39.45 24.53 68.60 1.68 41.14 16 22 H -0.25 -9.58 6.04 99.48 0.60 -8.98 16 23 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.24 -9.80 6.84 99.48 0.68 -9.12 16 25 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 26 H 0.16 2.88 6.09 -2.91 -0.02 2.86 16 27 H 0.17 2.11 6.12 -2.92 -0.02 2.09 16 28 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 29 H 0.41 3.34 9.06 -74.05 -0.67 2.67 16 30 H 0.12 4.20 5.45 -2.91 -0.02 4.18 16 31 H 0.11 4.42 2.91 -2.91 -0.01 4.41 16 32 H 0.30 14.04 8.29 -92.70 -0.77 13.27 16 Total: -1.00 -64.25 289.27 5.32 -58.93 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.42 Total: 9.51 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: 3.03 Total: -28.17 kcal Atomic # 7 Polarization: -68.06 SS G_CDS: 0.66 Total: -67.40 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -1.23 Total: -10.28 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.77 Total: -3.73 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 1.68 Total: 41.14 kcal Total: -64.25 5.32 -58.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240787019.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.070 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds