Wall clock time and date at job start Tue Mar 31 2020 05:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39065 * 120.56391 * 99.62493 * 3 2 1 5 5 C 1.39433 * 119.79791 * 180.27252 * 4 3 2 6 6 C 1.47915 * 119.50224 * 179.68331 * 5 4 3 7 7 C 1.39690 * 120.07900 * 180.02562 * 6 5 4 8 8 C 1.37809 * 119.95266 * 180.02562 * 7 6 5 9 9 C 1.38903 * 120.11093 * 0.02562 * 8 7 6 10 10 O 1.35852 * 119.91829 * 179.97438 * 9 8 7 11 11 C 1.39148 * 120.15634 * 359.97263 * 9 8 7 12 12 F 1.35094 * 119.97790 * 180.02562 * 11 9 8 13 13 C 1.37966 * 120.04556 * 359.76865 * 11 9 8 14 14 C 1.40036 * 120.99622 * 359.70887 * 5 4 3 15 15 C 1.35971 * 121.18710 * 359.97438 * 14 5 4 16 16 C 1.41059 * 120.11361 * 0.02562 * 15 14 5 17 17 C 1.40407 * 120.48625 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00504 * 205.40815 * 17 16 15 19 19 C 1.40272 * 119.99672 * 25.41407 * 17 16 15 20 20 N 1.30660 * 120.00280 * 16.91546 * 19 17 16 21 21 Si 1.86802 * 120.00068 * 196.91489 * 19 17 16 22 22 H 1.48494 * 109.47147 * 265.17931 * 21 19 17 23 23 H 1.48495 * 109.47044 * 25.18000 * 21 19 17 24 24 H 1.48499 * 109.47256 * 145.17978 * 21 19 17 25 25 H 1.07998 * 120.09765 * 359.96043 * 4 3 2 26 26 H 1.07993 * 120.02422 * 359.97438 * 7 6 5 27 27 H 1.07995 * 119.94449 * 180.02562 * 8 7 6 28 28 H 0.96704 * 113.99758 * 89.99863 * 10 9 8 29 29 H 1.07995 * 120.05267 * 180.24928 * 13 11 9 30 30 H 1.08000 * 119.40718 * 179.97438 * 14 5 4 31 31 H 1.08005 * 119.94199 * 180.02562 * 15 14 5 32 32 H 0.96998 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 0.2012 -1.1806 5 6 4.6692 0.1930 -1.1632 6 6 5.4146 0.3999 -2.4239 7 6 6.8115 0.3935 -2.4204 8 6 7.5034 0.5871 -3.5964 9 6 6.8141 0.7892 -4.7853 10 8 7.5001 0.9802 -5.9422 11 6 5.4227 0.7964 -4.7940 12 9 4.7559 0.9928 -5.9524 13 6 4.7235 0.5979 -3.6213 14 6 5.3744 -0.0087 0.0298 15 6 4.7239 -0.2023 1.2080 16 6 3.3139 -0.2033 1.2462 17 6 2.6342 -0.4031 2.4585 18 1 1.6321 -0.8057 2.4558 19 6 3.2569 -0.0795 3.6731 20 7 4.3068 0.6982 3.6822 21 14 2.5850 -0.7604 5.2776 22 1 1.6641 0.2311 5.8890 23 1 1.8478 -2.0214 5.0100 24 1 3.7090 -1.0323 6.2092 25 1 2.7458 0.3577 -2.1089 26 1 7.3489 0.2378 -1.4967 27 1 8.5833 0.5817 -3.5936 28 1 7.6951 0.1642 -6.4231 29 1 3.6436 0.5995 -3.6286 30 1 6.4542 -0.0105 0.0136 31 1 5.2880 -0.3556 2.1163 32 1 4.7375 0.9215 4.5221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240787027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:31 Heat of formation + Delta-G solvation = -28.394287 kcal Electronic energy + Delta-G solvation = -20060.185703 eV Core-core repulsion = 16671.584083 eV Total energy + Delta-G solvation = -3388.601620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.65281 -39.36760 -37.99524 -36.49863 -35.21603 -34.28415 -31.23869 -30.81915 -29.75215 -28.53172 -25.61321 -23.39934 -22.58690 -21.55118 -20.70968 -18.51165 -17.98792 -17.65708 -16.25881 -16.08164 -15.92571 -15.50055 -15.09136 -14.47586 -14.21179 -13.92440 -13.58121 -13.20942 -13.01464 -12.92100 -12.40037 -12.29547 -12.09434 -11.92393 -11.82511 -11.61041 -11.35700 -11.25071 -10.97681 -10.74686 -10.44717 -10.13069 -9.86889 -9.73513 -8.82840 -8.54843 -7.95057 -7.49453 -7.30370 -4.90499 1.12000 1.44310 2.07153 2.51126 2.78984 2.82573 2.89993 3.51834 3.70262 3.77434 4.15801 4.24203 4.29162 4.53531 4.97946 5.12345 5.27129 5.37818 5.45356 5.54481 5.76477 5.97160 6.09870 6.23274 6.34316 6.40957 6.46638 6.56762 6.63571 6.89387 6.98438 7.02768 7.34762 7.45945 7.60362 7.66654 7.71921 8.00460 8.17194 8.33622 8.67414 9.47876 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.004009 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.259203 B = 6981.877141 C = 7951.183269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C 0.298 3.702 3 C -0.186 4.186 4 C 0.006 3.994 5 C -0.213 4.213 6 C 0.048 3.952 7 C -0.140 4.140 8 C -0.102 4.102 9 C 0.022 3.978 10 O -0.491 6.491 11 C 0.087 3.913 12 F -0.141 7.141 13 C -0.173 4.173 14 C -0.052 4.052 15 C -0.165 4.165 16 C 0.154 3.846 17 C -0.407 4.407 18 H 0.091 0.909 19 C 0.072 3.928 20 N -0.747 5.747 21 Si 0.919 3.081 22 H -0.263 1.263 23 H -0.253 1.253 24 H -0.267 1.267 25 H 0.104 0.896 26 H 0.133 0.867 27 H 0.130 0.870 28 H 0.380 0.620 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -2.201 -5.148 9.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.012 4.012 3 C -0.192 4.192 4 C -0.015 4.015 5 C -0.215 4.215 6 C 0.048 3.952 7 C -0.158 4.158 8 C -0.121 4.121 9 C -0.023 4.023 10 O -0.300 6.300 11 C 0.067 3.933 12 F -0.120 7.120 13 C -0.192 4.192 14 C -0.071 4.071 15 C -0.184 4.184 16 C 0.148 3.852 17 C -0.433 4.433 18 H 0.109 0.891 19 C -0.153 4.153 20 N -0.367 5.367 21 Si 0.741 3.259 22 H -0.188 1.188 23 H -0.176 1.176 24 H -0.192 1.192 25 H 0.122 0.878 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.235 0.765 29 H 0.154 0.846 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.520 -1.459 -4.861 8.263 hybrid contribution 0.165 -0.558 0.326 0.667 sum 6.685 -2.016 -4.536 8.326 Atomic orbital electron populations 1.81044 1.12645 1.14576 1.09857 1.25722 0.92655 0.91338 0.91519 1.16763 0.83330 1.23632 0.95492 1.20659 0.92849 0.92889 0.95102 1.17671 0.91765 1.20640 0.91408 1.18776 0.92406 0.91931 0.92111 1.21168 0.93516 1.03216 0.97917 1.21124 1.00098 0.99363 0.91513 1.18316 0.87890 1.08977 0.87128 1.84871 1.75620 1.35220 1.34304 1.17992 0.89464 1.03697 0.82103 1.91450 1.80686 1.92675 1.47201 1.21121 1.00828 1.06464 0.90753 1.20500 0.97983 0.96665 0.92000 1.20913 0.93620 1.06784 0.97126 1.18535 0.91730 0.85041 0.89880 1.19939 1.01711 1.31384 0.90229 0.89122 1.26235 0.93938 0.92646 1.02492 1.69709 1.15144 1.20863 1.31005 0.86072 0.79916 0.80901 0.79022 1.18755 1.17646 1.19162 0.87768 0.84887 0.85165 0.76526 0.84619 0.88117 0.85479 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.66 18.54 41.84 0.78 -10.89 16 2 C 0.30 6.68 14.29 -22.47 -0.32 6.36 16 3 C -0.19 -4.04 5.93 -104.27 -0.62 -4.66 16 4 C 0.01 0.11 9.12 -38.83 -0.35 -0.24 16 5 C -0.21 -3.97 5.88 -104.82 -0.62 -4.59 16 6 C 0.05 0.80 5.88 -104.86 -0.62 0.18 16 7 C -0.14 -2.03 9.41 -39.20 -0.37 -2.39 16 8 C -0.10 -1.36 9.97 -39.49 -0.39 -1.76 16 9 C 0.02 0.32 6.72 -39.00 -0.26 0.06 16 10 O -0.49 -6.35 13.35 -19.27 -0.26 -6.61 16 11 C 0.09 1.38 7.30 -39.34 -0.29 1.09 16 12 F -0.14 -2.28 17.10 2.25 0.04 -2.24 16 13 C -0.17 -2.79 9.38 -39.15 -0.37 -3.15 16 14 C -0.05 -0.98 9.30 -39.72 -0.37 -1.35 16 15 C -0.17 -3.46 8.62 -39.33 -0.34 -3.80 16 16 C 0.15 3.46 5.73 -104.61 -0.60 2.87 16 17 C -0.41 -9.21 8.55 -38.00 -0.33 -9.54 16 18 H 0.09 2.08 7.38 -52.49 -0.39 1.69 16 19 C 0.07 1.51 5.16 -17.29 -0.09 1.42 16 20 N -0.75 -15.71 10.96 55.56 0.61 -15.10 16 21 Si 0.92 15.81 29.59 -169.99 -5.03 10.78 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 23 H -0.25 -4.43 7.11 56.52 0.40 -4.02 16 24 H -0.27 -4.39 7.11 56.52 0.40 -3.99 16 25 H 0.10 1.82 6.13 -52.49 -0.32 1.50 16 26 H 0.13 1.72 6.12 -52.49 -0.32 1.40 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.38 3.03 9.06 45.56 0.41 3.44 16 29 H 0.14 2.09 6.14 -52.49 -0.32 1.77 16 30 H 0.10 1.61 6.08 -52.49 -0.32 1.29 16 31 H 0.13 2.68 6.20 -52.48 -0.33 2.35 16 32 H 0.30 5.51 8.29 -40.82 -0.34 5.17 16 LS Contribution 295.57 15.07 4.45 4.45 Total: -1.00 -25.25 295.57 -6.48 -31.73 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -1.14 Total: 7.40 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -5.93 Total: -19.52 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 1.38 Total: -25.99 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.26 Total: -6.61 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 15.81 SS G_CDS: -5.03 Total: 10.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -25.25 -6.48 -31.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240787027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.335 kcal (2) G-P(sol) polarization free energy of solvation -25.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds