Wall clock time and date at job start Tue Mar 31 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39065 * 120.56391 * 99.62493 * 3 2 1 5 5 C 1.39433 * 119.79791 * 180.27252 * 4 3 2 6 6 C 1.47915 * 119.50224 * 179.68331 * 5 4 3 7 7 C 1.39690 * 120.07900 * 180.02562 * 6 5 4 8 8 C 1.37809 * 119.95266 * 180.02562 * 7 6 5 9 9 C 1.38903 * 120.11093 * 0.02562 * 8 7 6 10 10 O 1.35852 * 119.91829 * 179.97438 * 9 8 7 11 11 C 1.39148 * 120.15634 * 359.97263 * 9 8 7 12 12 F 1.35094 * 119.97790 * 180.02562 * 11 9 8 13 13 C 1.37966 * 120.04556 * 359.76865 * 11 9 8 14 14 C 1.40036 * 120.99622 * 359.70887 * 5 4 3 15 15 C 1.35971 * 121.18710 * 359.97438 * 14 5 4 16 16 C 1.41059 * 120.11361 * 0.02562 * 15 14 5 17 17 C 1.40407 * 120.48625 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00504 * 205.40815 * 17 16 15 19 19 C 1.40272 * 119.99672 * 25.41407 * 17 16 15 20 20 N 1.30660 * 120.00280 * 16.91546 * 19 17 16 21 21 Si 1.86802 * 120.00068 * 196.91489 * 19 17 16 22 22 H 1.48494 * 109.47147 * 265.17931 * 21 19 17 23 23 H 1.48495 * 109.47044 * 25.18000 * 21 19 17 24 24 H 1.48499 * 109.47256 * 145.17978 * 21 19 17 25 25 H 1.07998 * 120.09765 * 359.96043 * 4 3 2 26 26 H 1.07993 * 120.02422 * 359.97438 * 7 6 5 27 27 H 1.07995 * 119.94449 * 180.02562 * 8 7 6 28 28 H 0.96704 * 113.99758 * 89.99863 * 10 9 8 29 29 H 1.07995 * 120.05267 * 180.24928 * 13 11 9 30 30 H 1.08000 * 119.40718 * 179.97438 * 14 5 4 31 31 H 1.08005 * 119.94199 * 180.02562 * 15 14 5 32 32 H 0.96998 * 119.99844 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2750 0.2012 -1.1806 5 6 4.6692 0.1930 -1.1632 6 6 5.4146 0.3999 -2.4239 7 6 6.8115 0.3935 -2.4204 8 6 7.5034 0.5871 -3.5964 9 6 6.8141 0.7892 -4.7853 10 8 7.5001 0.9802 -5.9422 11 6 5.4227 0.7964 -4.7940 12 9 4.7559 0.9928 -5.9524 13 6 4.7235 0.5979 -3.6213 14 6 5.3744 -0.0087 0.0298 15 6 4.7239 -0.2023 1.2080 16 6 3.3139 -0.2033 1.2462 17 6 2.6342 -0.4031 2.4585 18 1 1.6321 -0.8057 2.4558 19 6 3.2569 -0.0795 3.6731 20 7 4.3068 0.6982 3.6822 21 14 2.5850 -0.7604 5.2776 22 1 1.6641 0.2311 5.8890 23 1 1.8478 -2.0214 5.0100 24 1 3.7090 -1.0323 6.2092 25 1 2.7458 0.3577 -2.1089 26 1 7.3489 0.2378 -1.4967 27 1 8.5833 0.5817 -3.5936 28 1 7.6951 0.1642 -6.4231 29 1 3.6436 0.5995 -3.6286 30 1 6.4542 -0.0105 0.0136 31 1 5.2880 -0.3556 2.1163 32 1 4.7375 0.9215 4.5221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240787027.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:30 Heat of formation + Delta-G solvation = -40.780041 kcal Electronic energy + Delta-G solvation = -20060.722789 eV Core-core repulsion = 16671.584083 eV Total energy + Delta-G solvation = -3389.138707 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.87351 -40.60352 -39.40878 -37.75604 -36.93142 -35.78209 -32.66330 -32.19717 -31.15043 -29.92099 -27.09106 -24.76768 -23.96859 -22.91641 -22.14102 -19.74703 -19.39854 -19.10794 -17.55757 -17.44161 -17.20506 -16.84649 -16.37851 -15.74081 -15.64641 -15.34965 -14.84199 -14.62393 -14.46163 -14.44909 -13.83995 -13.76050 -13.52907 -13.46595 -13.33826 -13.01392 -12.85145 -12.63198 -12.37073 -12.13746 -11.75036 -11.59264 -11.28106 -11.23730 -10.13617 -9.77989 -9.53095 -8.99565 -8.76861 -6.53762 -0.11887 0.27057 0.44763 1.06716 1.37390 1.47810 1.53213 1.99756 2.11582 2.28817 2.57307 2.83714 3.10052 3.41962 3.51983 3.67099 3.83510 4.06218 4.20994 4.32294 4.42162 4.57838 4.87374 4.93161 4.99421 5.07207 5.11952 5.17025 5.30138 5.42519 5.53033 5.75986 5.86249 5.92764 6.05751 6.11531 6.40727 6.56587 6.74000 6.82231 6.92841 7.98952 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.004009 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.259203 B = 6981.877141 C = 7951.183269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C 0.303 3.697 3 C -0.210 4.210 4 C -0.002 4.002 5 C -0.200 4.200 6 C 0.022 3.978 7 C -0.127 4.127 8 C -0.097 4.097 9 C 0.040 3.960 10 O -0.499 6.499 11 C 0.064 3.936 12 F -0.148 7.148 13 C -0.172 4.172 14 C -0.046 4.046 15 C -0.179 4.179 16 C 0.134 3.866 17 C -0.446 4.446 18 H 0.073 0.927 19 C 0.046 3.954 20 N -0.770 5.770 21 Si 0.978 3.022 22 H -0.265 1.265 23 H -0.262 1.262 24 H -0.249 1.249 25 H 0.119 0.881 26 H 0.153 0.847 27 H 0.165 0.835 28 H 0.406 0.594 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.970 -2.195 -6.063 12.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C -0.005 4.005 3 C -0.216 4.216 4 C -0.023 4.023 5 C -0.201 4.201 6 C 0.022 3.978 7 C -0.145 4.145 8 C -0.115 4.115 9 C -0.006 4.006 10 O -0.311 6.311 11 C 0.045 3.955 12 F -0.126 7.126 13 C -0.191 4.191 14 C -0.065 4.065 15 C -0.198 4.198 16 C 0.129 3.871 17 C -0.472 4.472 18 H 0.091 0.909 19 C -0.177 4.177 20 N -0.391 5.391 21 Si 0.798 3.202 22 H -0.190 1.190 23 H -0.186 1.186 24 H -0.172 1.172 25 H 0.136 0.864 26 H 0.171 0.829 27 H 0.183 0.817 28 H 0.265 0.735 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.342 -1.462 -5.809 11.098 hybrid contribution -0.483 -0.511 0.257 0.749 sum 8.859 -1.973 -5.553 10.640 Atomic orbital electron populations 1.81010 1.13188 1.15899 1.10664 1.25983 0.92941 0.90758 0.90846 1.16958 0.82950 1.25369 0.96362 1.20856 0.93587 0.92907 0.94950 1.17936 0.91520 1.18213 0.92469 1.18718 0.93453 0.94519 0.91119 1.21428 0.92520 1.01265 0.99292 1.21431 1.01730 0.98067 0.90279 1.18506 0.87403 1.06426 0.88217 1.84800 1.75108 1.37247 1.33991 1.18175 0.90299 1.05213 0.81846 1.91434 1.80953 1.92884 1.47366 1.21168 1.01006 1.05936 0.91024 1.20817 0.99669 0.94916 0.91087 1.20932 0.93010 1.07951 0.97950 1.18814 0.92746 0.85441 0.90127 1.19976 1.01610 1.33974 0.91648 0.90898 1.26793 0.94123 0.92445 1.04354 1.69689 1.15886 1.21273 1.32294 0.85219 0.79585 0.79573 0.75848 1.19030 1.18582 1.17226 0.86357 0.82906 0.81743 0.73545 0.84810 0.84819 0.85899 0.88252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -25.42 18.54 19.00 0.35 -25.07 16 2 C 0.30 14.18 14.29 88.33 1.26 15.44 16 3 C -0.21 -9.41 5.93 -19.63 -0.12 -9.53 16 4 C 0.00 -0.10 9.12 22.76 0.21 0.11 16 5 C -0.20 -7.17 5.88 -19.99 -0.12 -7.29 16 6 C 0.02 0.68 5.88 -20.02 -0.12 0.56 16 7 C -0.13 -3.15 9.41 22.52 0.21 -2.94 16 8 C -0.10 -2.11 9.97 22.33 0.22 -1.89 16 9 C 0.04 1.01 6.72 22.65 0.15 1.16 16 10 O -0.50 -10.84 13.35 -91.88 -1.23 -12.07 16 11 C 0.06 1.88 7.30 22.42 0.16 2.04 16 12 F -0.15 -4.52 17.10 44.97 0.77 -3.75 16 13 C -0.17 -5.26 9.38 22.55 0.21 -5.05 16 14 C -0.05 -1.66 9.30 22.18 0.21 -1.45 16 15 C -0.18 -7.54 8.62 22.43 0.19 -7.34 16 16 C 0.13 6.24 5.73 -19.86 -0.11 6.13 16 17 C -0.45 -21.13 8.55 23.29 0.20 -20.93 16 18 H 0.07 3.57 7.38 -2.91 -0.02 3.55 16 19 C 0.05 1.95 5.16 85.36 0.44 2.39 16 20 N -0.77 -32.70 10.96 21.88 0.24 -32.46 16 21 Si 0.98 32.80 29.59 68.60 2.03 34.83 16 22 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 23 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 24 H -0.25 -7.53 7.11 99.48 0.71 -6.82 16 25 H 0.12 4.16 6.13 -2.91 -0.02 4.14 16 26 H 0.15 3.17 6.12 -2.91 -0.02 3.16 16 27 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.41 4.70 9.06 -74.05 -0.67 4.03 16 29 H 0.13 4.03 6.14 -2.91 -0.02 4.01 16 30 H 0.13 3.82 6.08 -2.91 -0.02 3.80 16 31 H 0.12 5.21 6.20 -2.91 -0.02 5.20 16 32 H 0.31 11.34 8.29 -92.71 -0.77 10.57 16 Total: -1.00 -55.23 295.57 5.72 -49.51 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: 0.55 Total: 17.58 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 3.01 Total: -28.57 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.59 Total: -57.53 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.23 Total: -12.07 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.77 Total: -3.75 kcal Atomic # 14 Polarization: 32.80 SS G_CDS: 2.03 Total: 34.83 kcal Total: -55.23 5.72 -49.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240787027.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.730 kcal (2) G-P(sol) polarization free energy of solvation -55.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds