Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39043 * 120.56159 * 221.81889 * 3 2 1 5 5 C 1.39464 * 119.79912 * 180.02562 * 4 3 2 6 6 C 1.47838 * 119.50669 * 180.02562 * 5 4 3 7 7 C 1.39637 * 120.15640 * 309.72764 * 6 5 4 8 8 C 1.37798 * 119.93719 * 179.72150 * 7 6 5 9 9 C 1.38781 * 120.24607 * 0.55349 * 8 7 6 10 10 F 1.35108 * 119.84184 * 179.74264 * 9 8 7 11 11 C 1.38427 * 120.31059 * 359.72207 * 9 8 7 12 12 C 1.38490 * 120.06454 * 359.97438 * 11 9 8 13 13 O 1.35769 * 120.12740 * 179.97438 * 12 11 9 14 14 C 1.40074 * 120.98496 * 359.75176 * 5 4 3 15 15 C 1.35951 * 121.18476 * 0.51912 * 14 5 4 16 16 C 1.41079 * 120.11338 * 359.48259 * 15 14 5 17 17 C 1.40392 * 120.47852 * 180.28004 * 16 15 14 18 18 H 1.07997 * 119.99778 * 150.00267 * 17 16 15 19 19 C 1.40269 * 120.00166 * 330.00811 * 17 16 15 20 20 N 1.30653 * 120.00149 * 161.92161 * 19 17 16 21 21 Si 1.86807 * 119.99821 * 341.92371 * 19 17 16 22 22 H 1.48501 * 109.47225 * 95.39627 * 21 19 17 23 23 H 1.48504 * 109.47175 * 215.39871 * 21 19 17 24 24 H 1.48500 * 109.47135 * 335.39659 * 21 19 17 25 25 H 1.07999 * 120.09846 * 0.02562 * 4 3 2 26 26 H 1.08000 * 120.02785 * 359.97410 * 7 6 5 27 27 H 1.08000 * 119.88196 * 180.27639 * 8 7 6 28 28 H 1.08004 * 119.96809 * 180.02562 * 11 9 8 29 29 H 0.96701 * 114.00387 * 270.02355 * 13 12 11 30 30 H 1.07998 * 119.40735 * 180.25773 * 14 5 4 31 31 H 1.07997 * 119.94008 * 179.76846 * 15 14 5 32 32 H 0.97005 * 119.99832 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2746 0.8932 0.7983 5 6 4.6692 0.8804 0.7855 6 6 5.4139 1.8319 1.6373 7 6 5.1001 3.1923 1.6096 8 6 5.7933 4.0744 2.4097 9 6 6.8110 3.6177 3.2354 10 9 7.4889 4.4905 4.0127 11 6 7.1345 2.2721 3.2667 12 6 6.4419 1.3734 2.4726 13 8 6.7585 0.0534 2.5020 14 6 5.3747 -0.0244 -0.0180 15 6 4.7245 -0.9108 -0.8180 16 6 3.3142 -0.9397 -0.8425 17 6 2.6349 -1.8558 -1.6613 18 1 1.6651 -2.2281 -1.3660 19 6 3.2158 -2.2876 -2.8628 20 7 2.7821 -3.3739 -3.4448 21 14 4.6098 -1.3094 -3.6307 22 1 5.9110 -1.8915 -3.2144 23 1 4.4948 -1.3617 -5.1103 24 1 4.5317 0.1027 -3.1778 25 1 2.7452 1.5943 1.4264 26 1 4.3120 3.5521 0.9648 27 1 5.5468 5.1257 2.3909 28 1 7.9272 1.9227 3.9117 29 1 7.4342 -0.2034 1.8596 30 1 6.4545 -0.0149 -0.0050 31 1 5.2885 -1.5970 -1.4322 32 1 3.1841 -3.6727 -4.2755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242220564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -25.204612 kcal Electronic energy + Delta-G solvation = -20379.152465 eV Core-core repulsion = 16990.689160 eV Total energy + Delta-G solvation = -3388.463306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.82650 -39.70982 -37.80450 -36.35826 -35.27838 -34.25701 -31.92995 -30.38663 -30.14645 -28.96810 -25.51189 -23.20391 -22.36100 -22.13819 -20.98563 -18.60665 -17.89092 -17.64177 -16.60343 -16.41270 -15.63976 -15.52377 -15.13667 -14.55651 -14.42636 -14.06726 -13.67893 -13.57737 -13.40493 -13.00921 -12.83945 -12.28799 -12.02913 -11.99373 -11.71975 -11.61059 -11.37886 -11.16105 -11.05792 -10.69362 -10.46612 -10.16102 -10.01443 -9.55701 -8.89117 -8.56916 -8.07321 -7.60366 -7.45550 -4.93786 1.09926 1.24765 1.89106 2.34437 2.82931 2.95285 3.04145 3.52691 3.62386 3.76067 3.94381 4.08734 4.28871 4.58632 4.88646 4.99513 5.04762 5.13599 5.27712 5.47836 5.65131 5.78457 5.83136 6.06449 6.16551 6.25273 6.31885 6.39551 6.53934 6.70613 6.83063 6.95706 7.18047 7.28252 7.46139 7.61094 7.78809 7.83486 8.15150 8.24683 8.65206 9.52318 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.004806 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.678113 B = 5824.499787 C = 6509.708015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.296 3.704 3 C -0.170 4.170 4 C 0.011 3.989 5 C -0.205 4.205 6 C -0.024 4.024 7 C -0.085 4.085 8 C -0.156 4.156 9 C 0.085 3.915 10 F -0.146 7.146 11 C -0.178 4.178 12 C 0.127 3.873 13 O -0.483 6.483 14 C -0.020 4.020 15 C -0.234 4.234 16 C 0.128 3.872 17 C -0.400 4.400 18 H 0.099 0.901 19 C 0.079 3.921 20 N -0.765 5.765 21 Si 0.918 3.082 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.235 1.235 25 H 0.106 0.894 26 H 0.137 0.863 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.387 0.613 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.172 8.238 4.482 14.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.015 4.015 3 C -0.176 4.176 4 C -0.010 4.010 5 C -0.206 4.206 6 C -0.024 4.024 7 C -0.103 4.103 8 C -0.175 4.175 9 C 0.066 3.934 10 F -0.125 7.125 11 C -0.198 4.198 12 C 0.081 3.919 13 O -0.293 6.293 14 C -0.039 4.039 15 C -0.253 4.253 16 C 0.122 3.878 17 C -0.425 4.425 18 H 0.117 0.883 19 C -0.146 4.146 20 N -0.385 5.385 21 Si 0.742 3.258 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.158 1.158 25 H 0.124 0.876 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.153 0.847 29 H 0.244 0.756 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.946 7.992 4.748 12.901 hybrid contribution 1.489 0.215 -0.599 1.619 sum 10.435 8.208 4.149 13.909 Atomic orbital electron populations 1.81053 1.12609 1.11410 1.12240 1.25638 0.92583 0.91742 0.91526 1.16659 0.83404 1.05457 1.12062 1.20617 0.92444 0.94385 0.93574 1.17485 0.91766 1.04115 1.07282 1.19339 0.95517 0.92989 0.94586 1.21118 0.99366 0.91597 0.98213 1.21039 0.97004 1.01010 0.98470 1.17453 0.94716 0.86784 0.94449 1.91468 1.78945 1.68812 1.73226 1.21229 1.03094 0.91520 1.03920 1.18269 0.95223 0.83221 0.95147 1.84817 1.62204 1.20344 1.61905 1.20207 0.97356 0.92570 0.93725 1.20578 0.93815 1.04385 1.06487 1.18477 0.91036 0.88385 0.89897 1.19747 1.05058 1.15813 1.01910 0.88278 1.26514 0.97469 0.93676 0.96964 1.69594 1.36262 1.16873 1.15783 0.86183 0.79435 0.83021 0.77150 1.18754 1.21065 1.15769 0.87589 0.84549 0.85015 0.84739 0.75644 0.88751 0.87214 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.59 18.54 41.84 0.78 -10.82 16 2 C 0.30 6.62 14.36 -22.47 -0.32 6.30 16 3 C -0.17 -3.61 5.93 -104.27 -0.62 -4.23 16 4 C 0.01 0.20 9.18 -38.83 -0.36 -0.16 16 5 C -0.21 -3.56 5.30 -104.82 -0.56 -4.12 16 6 C -0.02 -0.35 5.46 -104.72 -0.57 -0.93 16 7 C -0.08 -1.12 9.48 -39.22 -0.37 -1.49 16 8 C -0.16 -1.90 10.01 -39.54 -0.40 -2.29 16 9 C 0.09 1.10 7.30 -39.31 -0.29 0.81 16 10 F -0.15 -1.90 17.26 2.25 0.04 -1.86 16 11 C -0.18 -2.29 9.95 -39.42 -0.39 -2.68 16 12 C 0.13 1.78 6.59 -38.76 -0.26 1.53 16 13 O -0.48 -6.54 12.09 -19.02 -0.23 -6.77 16 14 C -0.02 -0.34 8.62 -39.71 -0.34 -0.68 16 15 C -0.23 -4.64 7.10 -39.33 -0.28 -4.92 16 16 C 0.13 2.83 5.26 -104.61 -0.55 2.28 16 17 C -0.40 -9.62 9.01 -38.01 -0.34 -9.96 16 18 H 0.10 2.62 7.65 -52.49 -0.40 2.22 16 19 C 0.08 1.81 5.41 -17.29 -0.09 1.71 16 20 N -0.77 -17.90 13.92 55.56 0.77 -17.12 16 21 Si 0.92 17.57 24.52 -169.99 -4.17 13.40 16 22 H -0.26 -4.71 6.71 56.52 0.38 -4.33 16 23 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.24 -4.57 6.86 56.52 0.39 -4.18 16 25 H 0.11 1.75 8.02 -52.49 -0.42 1.33 16 26 H 0.14 1.63 8.03 -52.49 -0.42 1.21 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.39 3.57 8.17 45.56 0.37 3.94 16 30 H 0.09 1.34 6.97 -52.49 -0.37 0.97 16 31 H 0.11 2.11 4.75 -52.49 -0.25 1.86 16 32 H 0.30 6.13 8.29 -40.82 -0.34 5.79 16 LS Contribution 293.97 15.07 4.43 4.43 Total: -1.00 -26.05 293.97 -5.62 -31.67 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.50 Total: 5.88 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -5.73 Total: -18.82 kcal Atomic # 7 Polarization: -29.49 SS G_CDS: 1.55 Total: -27.94 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.23 Total: -6.77 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -4.17 Total: 13.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.05 -5.62 -31.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242220564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.464 kcal (2) G-P(sol) polarization free energy of solvation -26.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds