Wall clock time and date at job start Tue Mar 31 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39043 * 120.56159 * 221.81889 * 3 2 1 5 5 C 1.39464 * 119.79912 * 180.02562 * 4 3 2 6 6 C 1.47838 * 119.50669 * 180.02562 * 5 4 3 7 7 C 1.39637 * 120.15640 * 309.72764 * 6 5 4 8 8 C 1.37798 * 119.93719 * 179.72150 * 7 6 5 9 9 C 1.38781 * 120.24607 * 0.55349 * 8 7 6 10 10 F 1.35108 * 119.84184 * 179.74264 * 9 8 7 11 11 C 1.38427 * 120.31059 * 359.72207 * 9 8 7 12 12 C 1.38490 * 120.06454 * 359.97438 * 11 9 8 13 13 O 1.35769 * 120.12740 * 179.97438 * 12 11 9 14 14 C 1.40074 * 120.98496 * 359.75176 * 5 4 3 15 15 C 1.35951 * 121.18476 * 0.51912 * 14 5 4 16 16 C 1.41079 * 120.11338 * 359.48259 * 15 14 5 17 17 C 1.40392 * 120.47852 * 180.28004 * 16 15 14 18 18 H 1.07997 * 119.99778 * 150.00267 * 17 16 15 19 19 C 1.40269 * 120.00166 * 330.00811 * 17 16 15 20 20 N 1.30653 * 120.00149 * 161.92161 * 19 17 16 21 21 Si 1.86807 * 119.99821 * 341.92371 * 19 17 16 22 22 H 1.48501 * 109.47225 * 95.39627 * 21 19 17 23 23 H 1.48504 * 109.47175 * 215.39871 * 21 19 17 24 24 H 1.48500 * 109.47135 * 335.39659 * 21 19 17 25 25 H 1.07999 * 120.09846 * 0.02562 * 4 3 2 26 26 H 1.08000 * 120.02785 * 359.97410 * 7 6 5 27 27 H 1.08000 * 119.88196 * 180.27639 * 8 7 6 28 28 H 1.08004 * 119.96809 * 180.02562 * 11 9 8 29 29 H 0.96701 * 114.00387 * 270.02355 * 13 12 11 30 30 H 1.07998 * 119.40735 * 180.25773 * 14 5 4 31 31 H 1.07997 * 119.94008 * 179.76846 * 15 14 5 32 32 H 0.97005 * 119.99832 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2746 0.8932 0.7983 5 6 4.6692 0.8804 0.7855 6 6 5.4139 1.8319 1.6373 7 6 5.1001 3.1923 1.6096 8 6 5.7933 4.0744 2.4097 9 6 6.8110 3.6177 3.2354 10 9 7.4889 4.4905 4.0127 11 6 7.1345 2.2721 3.2667 12 6 6.4419 1.3734 2.4726 13 8 6.7585 0.0534 2.5020 14 6 5.3747 -0.0244 -0.0180 15 6 4.7245 -0.9108 -0.8180 16 6 3.3142 -0.9397 -0.8425 17 6 2.6349 -1.8558 -1.6613 18 1 1.6651 -2.2281 -1.3660 19 6 3.2158 -2.2876 -2.8628 20 7 2.7821 -3.3739 -3.4448 21 14 4.6098 -1.3094 -3.6307 22 1 5.9110 -1.8915 -3.2144 23 1 4.4948 -1.3617 -5.1103 24 1 4.5317 0.1027 -3.1778 25 1 2.7452 1.5943 1.4264 26 1 4.3120 3.5521 0.9648 27 1 5.5468 5.1257 2.3909 28 1 7.9272 1.9227 3.9117 29 1 7.4342 -0.2034 1.8596 30 1 6.4545 -0.0149 -0.0050 31 1 5.2885 -1.5970 -1.4322 32 1 3.1841 -3.6727 -4.2755 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242220564.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:57 Heat of formation + Delta-G solvation = -39.765790 kcal Electronic energy + Delta-G solvation = -20379.783885 eV Core-core repulsion = 16990.689160 eV Total energy + Delta-G solvation = -3389.094726 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.83402 -40.85224 -39.29004 -37.38027 -37.04802 -35.84980 -33.35662 -31.93825 -31.22313 -30.25742 -26.99538 -24.51038 -23.62356 -23.45630 -22.38517 -19.71207 -19.53359 -19.01534 -17.62096 -17.56026 -17.09348 -16.54936 -16.41741 -15.99087 -15.74425 -15.43743 -14.90582 -14.73262 -14.65096 -14.52582 -14.43385 -13.85932 -13.64605 -13.42151 -13.19285 -13.04598 -12.66337 -12.47817 -12.38049 -12.07328 -11.94946 -11.60325 -11.41507 -11.07560 -9.97135 -9.77004 -9.60123 -9.09944 -9.00438 -6.65479 -0.02082 0.26583 0.30717 0.85821 1.29805 1.45199 1.54965 1.97113 2.07277 2.24010 2.53987 2.65224 3.09129 3.43267 3.50233 3.60040 3.93454 3.97647 4.12086 4.17759 4.45272 4.47203 4.69699 4.82517 4.90919 5.04042 5.08871 5.14909 5.27784 5.32922 5.49188 5.61394 5.72248 5.90495 5.92638 6.00430 6.18163 6.48374 6.58008 6.88542 6.92500 7.95754 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021756 B = 0.004806 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.678113 B = 5824.499787 C = 6509.708015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C 0.301 3.699 3 C -0.190 4.190 4 C 0.007 3.993 5 C -0.177 4.177 6 C -0.052 4.052 7 C -0.078 4.078 8 C -0.153 4.153 9 C 0.088 3.912 10 F -0.146 7.146 11 C -0.180 4.180 12 C 0.132 3.868 13 O -0.496 6.496 14 C -0.013 4.013 15 C -0.241 4.241 16 C 0.122 3.878 17 C -0.448 4.448 18 H 0.051 0.949 19 C 0.047 3.953 20 N -0.815 5.815 21 Si 0.969 3.031 22 H -0.236 1.236 23 H -0.278 1.278 24 H -0.238 1.238 25 H 0.127 0.873 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.407 0.593 30 H 0.137 0.863 31 H 0.118 0.882 32 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.600 10.779 5.737 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.008 4.008 3 C -0.195 4.195 4 C -0.014 4.014 5 C -0.179 4.179 6 C -0.053 4.053 7 C -0.096 4.096 8 C -0.172 4.172 9 C 0.069 3.931 10 F -0.124 7.124 11 C -0.199 4.199 12 C 0.087 3.913 13 O -0.309 6.309 14 C -0.032 4.032 15 C -0.260 4.260 16 C 0.117 3.883 17 C -0.475 4.475 18 H 0.069 0.931 19 C -0.173 4.173 20 N -0.438 5.438 21 Si 0.788 3.212 22 H -0.160 1.160 23 H -0.205 1.205 24 H -0.161 1.161 25 H 0.144 0.856 26 H 0.166 0.834 27 H 0.174 0.826 28 H 0.168 0.832 29 H 0.267 0.733 30 H 0.155 0.845 31 H 0.135 0.865 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.386 10.529 6.015 17.333 hybrid contribution 0.564 -0.341 -0.681 0.948 sum 12.949 10.188 5.334 17.319 Atomic orbital electron populations 1.81021 1.13442 1.12517 1.13418 1.26019 0.93052 0.90966 0.90780 1.16919 0.82801 1.06526 1.13295 1.20867 0.93241 0.93980 0.93264 1.17845 0.91391 1.03093 1.05531 1.19272 0.96778 0.93335 0.95938 1.21250 0.99319 0.90950 0.98070 1.21260 0.96218 1.02161 0.97532 1.17652 0.94511 0.86902 0.94053 1.91479 1.78939 1.68815 1.73204 1.21354 1.03401 0.91359 1.03811 1.18255 0.94668 0.83530 0.94842 1.84779 1.63137 1.20113 1.62921 1.20658 0.99614 0.91045 0.91855 1.20715 0.92615 1.05375 1.07279 1.18644 0.92396 0.87822 0.89438 1.19571 1.04224 1.19243 1.04500 0.93066 1.27242 0.99451 0.94091 0.96512 1.69622 1.38565 1.18568 1.17007 0.85450 0.77781 0.81353 0.76584 1.15964 1.20482 1.16103 0.85552 0.83377 0.82583 0.83155 0.73341 0.84528 0.86468 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.60 18.54 19.01 0.35 -25.25 16 2 C 0.30 13.99 14.36 88.33 1.27 15.26 16 3 C -0.19 -8.09 5.93 -19.64 -0.12 -8.21 16 4 C 0.01 0.25 9.18 22.76 0.21 0.46 16 5 C -0.18 -5.55 5.30 -20.00 -0.11 -5.66 16 6 C -0.05 -1.36 5.46 -19.93 -0.11 -1.47 16 7 C -0.08 -1.72 9.48 22.50 0.21 -1.50 16 8 C -0.15 -3.01 10.01 22.30 0.22 -2.79 16 9 C 0.09 1.89 7.30 22.44 0.16 2.06 16 10 F -0.15 -3.21 17.26 44.97 0.78 -2.44 16 11 C -0.18 -3.84 9.95 22.37 0.22 -3.62 16 12 C 0.13 3.15 6.59 22.80 0.15 3.30 16 13 O -0.50 -11.34 12.09 -90.96 -1.10 -12.44 16 14 C -0.01 -0.41 8.62 22.18 0.19 -0.22 16 15 C -0.24 -9.12 7.10 22.44 0.16 -8.96 16 16 C 0.12 5.51 5.26 -19.86 -0.10 5.40 16 17 C -0.45 -22.97 9.01 23.29 0.21 -22.76 16 18 H 0.05 3.00 7.65 -2.91 -0.02 2.97 16 19 C 0.05 2.25 5.41 85.36 0.46 2.71 16 20 N -0.82 -40.34 13.92 21.88 0.30 -40.03 16 21 Si 0.97 35.61 24.52 68.60 1.68 37.29 16 22 H -0.24 -7.60 6.71 99.48 0.67 -6.93 16 23 H -0.28 -9.87 7.11 99.48 0.71 -9.16 16 24 H -0.24 -8.75 6.86 99.48 0.68 -8.07 16 25 H 0.13 3.87 8.02 -2.91 -0.02 3.85 16 26 H 0.15 2.91 8.03 -2.91 -0.02 2.88 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.41 5.55 8.17 -74.06 -0.61 4.94 16 30 H 0.14 3.12 6.97 -2.91 -0.02 3.10 16 31 H 0.12 4.25 4.75 -2.91 -0.01 4.23 16 32 H 0.30 13.23 8.29 -92.70 -0.77 12.46 16 Total: -1.00 -59.22 293.97 5.59 -53.63 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.53 Total: 15.25 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: 3.04 Total: -26.01 kcal Atomic # 7 Polarization: -65.94 SS G_CDS: 0.66 Total: -65.28 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.10 Total: -12.44 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.44 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 1.68 Total: 37.29 kcal Total: -59.22 5.59 -53.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242220564.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.867 kcal (2) G-P(sol) polarization free energy of solvation -59.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds