Wall clock time and date at job start Tue Mar 31 2020 05:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39376 * 120.12083 * 330.14356 * 3 2 1 5 5 C 1.39302 * 119.75131 * 179.97438 * 4 3 2 6 6 C 1.47893 * 120.00101 * 179.97438 * 5 4 3 7 7 C 1.39973 * 119.89941 * 309.75017 * 6 5 4 8 8 C 1.36206 * 120.14002 * 179.71583 * 7 6 5 9 9 C 1.40984 * 119.93135 * 0.57987 * 8 7 6 10 10 C 1.41006 * 120.10467 * 179.71993 * 9 8 7 11 11 H 1.07996 * 119.99908 * 24.69695 * 10 9 8 12 12 C 1.39959 * 119.99837 * 204.69690 * 10 9 8 13 13 N 1.30827 * 120.00400 * 17.97649 * 12 10 9 14 14 Si 1.86804 * 119.99904 * 197.97371 * 12 10 9 15 15 H 1.48499 * 109.46737 * 60.00095 * 14 12 10 16 16 H 1.48497 * 109.47016 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47060 * 300.00306 * 14 12 10 18 18 C 1.40883 * 119.79512 * 359.69267 * 9 8 7 19 19 C 1.36452 * 119.86160 * 0.02562 * 18 9 8 20 20 F 1.35095 * 119.96656 * 179.97438 * 19 18 9 21 21 C 1.39905 * 119.99962 * 359.97438 * 5 4 3 22 22 C 1.37729 * 120.24612 * 0.02562 * 21 5 4 23 23 C 1.38863 * 120.24952 * 0.26659 * 22 21 5 24 24 O 1.35626 * 120.00189 * 179.73098 * 23 22 21 25 25 H 1.07997 * 120.12489 * 359.97438 * 4 3 2 26 26 H 1.08005 * 119.92934 * 359.97438 * 7 6 5 27 27 H 1.08000 * 120.03781 * 180.26970 * 8 7 6 28 28 H 0.96996 * 120.00151 * 179.97438 * 13 12 10 29 29 H 1.07996 * 120.06946 * 180.02562 * 18 9 8 30 30 H 1.07999 * 119.87582 * 180.02562 * 21 5 4 31 31 H 1.08005 * 119.87877 * 179.97438 * 22 21 5 32 32 H 0.96694 * 114.00594 * 89.99672 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2680 -1.0446 0.6002 5 6 4.6609 -1.0365 0.5952 6 6 5.4092 -2.1425 1.2309 7 6 5.0930 -2.5395 2.5354 8 6 5.7751 -3.5614 3.1235 9 6 6.8099 -4.2124 2.4214 10 6 7.5223 -5.2668 3.0289 11 1 7.0650 -5.8419 3.8204 12 6 8.8220 -5.5681 2.6060 13 7 9.5073 -4.6892 1.9208 14 14 9.5784 -7.2251 3.0202 15 1 8.7498 -8.3082 2.4324 16 1 10.9531 -7.2949 2.4629 17 1 9.6338 -7.3892 4.4951 18 6 7.1296 -3.8067 1.1107 19 6 6.4370 -2.7859 0.5275 20 9 6.7421 -2.3948 -0.7291 21 6 5.3522 0.0180 -0.0111 22 6 4.6605 1.0509 -0.6042 23 6 3.2719 1.0562 -0.5999 24 8 2.5958 2.0786 -1.1806 25 1 2.7324 -1.8578 1.0673 26 1 4.3038 -2.0374 3.0752 27 1 5.5269 -3.8693 4.1285 28 1 10.4082 -4.8979 1.6281 29 1 7.9211 -4.3026 0.5686 30 1 6.4321 0.0221 -0.0142 31 1 5.2001 1.8621 -1.0702 32 1 2.3958 1.9369 -2.1160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242564562.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:20 Heat of formation + Delta-G solvation = -25.575869 kcal Electronic energy + Delta-G solvation = -20216.092249 eV Core-core repulsion = 16827.612844 eV Total energy + Delta-G solvation = -3388.479405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.82913 -39.80567 -37.79733 -36.59782 -36.24034 -34.00139 -31.33317 -31.14862 -29.30074 -28.56183 -25.39813 -23.77162 -22.60155 -21.14583 -20.77139 -18.85624 -17.86543 -17.74447 -16.05910 -15.88834 -15.62090 -15.02281 -14.98203 -14.74120 -14.37971 -13.94580 -13.66007 -13.30989 -13.03812 -12.99500 -12.77379 -12.44769 -12.20494 -12.12219 -11.87115 -11.73867 -11.28445 -11.11862 -10.83587 -10.59589 -10.48553 -10.15856 -9.88437 -9.48577 -8.89389 -8.55521 -7.69670 -7.44189 -7.09552 -4.70020 0.84793 1.31206 2.39083 2.73652 2.74432 2.89726 2.91354 2.95453 3.15366 3.68502 3.84045 3.96721 4.16903 4.29734 4.98525 5.24860 5.29860 5.42615 5.49719 5.55611 5.76726 5.96596 6.07309 6.30220 6.36653 6.48024 6.68244 6.69945 6.80517 6.84063 6.97764 7.33468 7.43758 7.52091 7.59069 7.59985 7.69362 7.94947 8.26392 8.50516 8.57082 9.80751 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.003804 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.642485 B = 7358.934729 C = 7891.545304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.269 3.731 3 C -0.059 4.059 4 C -0.063 4.063 5 C 0.010 3.990 6 C -0.249 4.249 7 C -0.039 4.039 8 C -0.234 4.234 9 C 0.136 3.864 10 C -0.440 4.440 11 H 0.087 0.913 12 C 0.073 3.927 13 N -0.771 5.771 14 Si 0.915 3.085 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.262 1.262 18 C -0.210 4.210 19 C 0.137 3.863 20 F -0.162 7.162 21 C -0.073 4.073 22 C -0.139 4.139 23 C 0.124 3.876 24 O -0.496 6.496 25 H 0.135 0.865 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.289 0.711 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 4.748 -3.823 6.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.045 4.045 3 C -0.063 4.063 4 C -0.084 4.084 5 C 0.010 3.990 6 C -0.251 4.251 7 C -0.058 4.058 8 C -0.253 4.253 9 C 0.132 3.868 10 C -0.467 4.467 11 H 0.105 0.895 12 C -0.148 4.148 13 N -0.393 5.393 14 Si 0.738 3.262 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.186 1.186 18 C -0.230 4.230 19 C 0.118 3.882 20 F -0.141 7.141 21 C -0.092 4.092 22 C -0.158 4.158 23 C 0.077 3.923 24 O -0.306 6.306 25 H 0.153 0.847 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -4.030 5.064 -3.418 7.319 hybrid contribution 0.978 -0.762 -0.504 1.338 sum -3.051 4.302 -3.923 6.573 Atomic orbital electron populations 1.81181 1.12067 1.08496 1.08999 1.25568 0.92524 0.93019 0.93430 1.16321 0.84364 0.97668 1.07919 1.21280 0.93598 0.96162 0.97353 1.18725 0.91557 0.93611 0.95152 1.17817 1.05037 1.04825 0.97416 1.20181 0.97303 0.95757 0.92546 1.20717 1.03746 1.00956 0.99907 1.17455 0.89642 0.89884 0.89795 1.19711 0.97761 1.12618 1.16600 0.89450 1.26086 0.97308 0.98422 0.93025 1.69796 1.10585 1.33378 1.25558 0.86235 0.78322 0.81492 0.80125 1.18413 1.19991 1.18609 1.20943 1.04301 1.00970 0.96775 1.17308 0.95766 0.96579 0.78586 1.91346 1.92621 1.90613 1.39471 1.21503 1.00706 0.91823 0.95171 1.21203 0.92362 0.99778 1.02419 1.18327 0.89735 0.86672 0.97611 1.84755 1.76544 1.40346 1.28924 0.84747 0.88114 0.88018 0.90005 0.85229 0.84955 0.84833 0.75473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.07 18.54 41.84 0.78 -6.30 16 2 C 0.27 4.03 14.86 -22.47 -0.33 3.69 16 3 C -0.06 -0.83 5.74 -106.76 -0.61 -1.44 16 4 C -0.06 -0.95 9.20 -38.76 -0.36 -1.31 16 5 C 0.01 0.16 5.31 -104.93 -0.56 -0.39 16 6 C -0.25 -4.94 5.50 -104.56 -0.57 -5.52 16 7 C -0.04 -0.77 9.43 -39.66 -0.37 -1.15 16 8 C -0.23 -5.02 9.73 -39.27 -0.38 -5.40 16 9 C 0.14 3.22 5.57 -106.81 -0.60 2.63 16 10 C -0.44 -10.32 9.03 -37.89 -0.34 -10.67 16 11 H 0.09 1.93 7.91 -52.49 -0.42 1.52 16 12 C 0.07 1.64 5.13 -17.34 -0.09 1.55 16 13 N -0.77 -17.94 10.96 55.55 0.61 -17.33 16 14 Si 0.91 16.62 29.60 -169.99 -5.03 11.59 16 15 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 16 H -0.28 -4.90 7.11 56.52 0.40 -4.50 16 17 H -0.26 -4.70 7.11 56.52 0.40 -4.29 16 18 C -0.21 -5.00 8.60 -39.23 -0.34 -5.33 16 19 C 0.14 3.00 7.09 -39.49 -0.28 2.72 16 20 F -0.16 -3.39 15.84 2.25 0.04 -3.36 16 21 C -0.07 -1.10 8.83 -39.14 -0.35 -1.45 16 22 C -0.14 -1.76 9.96 -39.54 -0.39 -2.16 16 23 C 0.12 1.61 6.72 -38.56 -0.26 1.35 16 24 O -0.50 -5.67 12.92 -18.58 -0.24 -5.91 16 25 H 0.13 1.91 8.03 -52.49 -0.42 1.49 16 26 H 0.10 1.71 8.03 -52.48 -0.42 1.28 16 27 H 0.10 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 29 H 0.13 3.22 6.16 -52.49 -0.32 2.90 16 30 H 0.13 2.00 7.75 -52.49 -0.41 1.59 16 31 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 32 H 0.39 2.65 9.06 45.56 0.41 3.06 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -25.90 301.22 -6.70 -32.60 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -1.56 Total: 7.03 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -5.83 Total: -22.88 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 1.38 Total: -23.62 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.24 Total: -5.91 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.59 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.90 -6.70 -32.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242564562.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.023 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds