Wall clock time and date at job start Tue Mar 31 2020 05:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39391 * 120.12013 * 156.17910 * 3 2 1 5 5 C 1.39271 * 119.75180 * 180.26746 * 4 3 2 6 6 C 1.47942 * 119.99892 * 179.72981 * 5 4 3 7 7 C 1.40048 * 119.86745 * 179.73055 * 6 5 4 8 8 C 1.36174 * 120.18291 * 179.97438 * 7 6 5 9 9 C 1.40949 * 119.90264 * 0.02562 * 8 7 6 10 10 C 1.40928 * 120.13441 * 180.02562 * 9 8 7 11 11 H 1.08003 * 119.99956 * 205.36687 * 10 9 8 12 12 C 1.39971 * 120.00011 * 25.37082 * 10 9 8 13 13 N 1.30837 * 119.99909 * 26.59008 * 12 10 9 14 14 Si 1.86794 * 119.99830 * 206.59315 * 12 10 9 15 15 H 1.48505 * 109.47063 * 179.97438 * 14 12 10 16 16 H 1.48502 * 109.47349 * 299.99517 * 14 12 10 17 17 H 1.48502 * 109.47495 * 59.99920 * 14 12 10 18 18 C 1.41185 * 119.73136 * 0.28018 * 9 8 7 19 19 F 1.35109 * 120.09001 * 179.72832 * 18 9 8 20 20 C 1.36540 * 119.81833 * 359.43866 * 18 9 8 21 21 C 1.39880 * 120.00411 * 359.45873 * 5 4 3 22 22 C 1.37742 * 120.24971 * 0.26545 * 21 5 4 23 23 C 1.38845 * 120.24387 * 0.02562 * 22 21 5 24 24 O 1.35632 * 120.00359 * 180.02562 * 23 22 21 25 25 H 1.07998 * 120.12009 * 0.02562 * 4 3 2 26 26 H 1.07999 * 119.91133 * 359.97438 * 7 6 5 27 27 H 1.08002 * 120.04819 * 180.02562 * 8 7 6 28 28 H 0.96998 * 120.00121 * 5.89651 * 13 12 10 29 29 H 1.08000 * 119.95531 * 180.25494 * 20 18 9 30 30 H 1.08000 * 119.87365 * 180.25237 * 21 5 4 31 31 H 1.07999 * 119.87664 * 180.02562 * 22 21 5 32 32 H 0.96693 * 113.99996 * 89.99553 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2671 1.1039 -0.4870 5 6 4.6597 1.0941 -0.4885 6 6 5.4071 2.2597 -1.0096 7 6 6.8075 2.2492 -1.0046 8 6 7.5019 3.3184 -1.4832 9 6 6.8091 4.4389 -1.9844 10 6 7.5228 5.5478 -2.4813 11 1 7.0678 6.5273 -2.4805 12 6 8.8214 5.3798 -2.9760 13 7 9.1908 4.2236 -3.4646 14 14 10.0269 6.8062 -2.9387 15 1 11.3247 6.3727 -3.5158 16 1 9.4828 7.9352 -3.7354 17 1 10.2318 7.2446 -1.5347 18 6 5.3973 4.4480 -1.9816 19 9 4.7259 5.5206 -2.4552 20 6 4.7123 3.3676 -1.5044 21 6 5.3519 -0.0155 0.0078 22 6 4.6614 -1.1034 0.4944 23 6 3.2729 -1.1071 0.4952 24 8 2.5979 -2.1808 0.9760 25 1 2.7306 1.9615 -0.8652 26 1 7.3383 1.3908 -0.6202 27 1 8.5819 3.3078 -1.4787 28 1 8.5422 3.5092 -3.5631 29 1 3.6323 3.3706 -1.5050 30 1 6.4319 -0.0192 0.0094 31 1 5.2019 -1.9568 0.8765 32 1 2.4017 -2.1310 1.9215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242564599.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:42 Heat of formation + Delta-G solvation = -30.265890 kcal Electronic energy + Delta-G solvation = -20101.783122 eV Core-core repulsion = 16713.100343 eV Total energy + Delta-G solvation = -3388.682779 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.52680 -39.90023 -38.09383 -36.62555 -36.28483 -34.34165 -31.46041 -31.08658 -29.55225 -28.46272 -25.27808 -23.96521 -22.78144 -21.07556 -20.91208 -18.92659 -18.43098 -17.81851 -16.17911 -15.90545 -15.63831 -15.04098 -14.83996 -14.38109 -14.33988 -14.08810 -13.82190 -13.50368 -13.20003 -12.87239 -12.83365 -12.67254 -12.36115 -12.27284 -11.78783 -11.68549 -11.37673 -11.10147 -10.94350 -10.60165 -10.57998 -10.08911 -9.90667 -9.42366 -8.95605 -8.85083 -7.98282 -7.69285 -7.42259 -4.77848 0.76945 1.18763 2.33133 2.48351 2.72083 2.94636 2.98589 3.17113 3.20914 3.73021 3.80522 3.94345 4.12992 4.31112 4.90124 5.05346 5.14927 5.32188 5.43220 5.64086 5.67685 5.70381 5.98519 6.04943 6.27024 6.30597 6.41725 6.59758 6.73756 6.77613 6.98364 7.19426 7.32181 7.43047 7.50122 7.55403 7.58694 7.63776 7.83190 8.25603 8.38460 9.58141 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.031062 B = 0.003807 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.207268 B = 7352.482651 C = 8141.283396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.268 3.732 3 C -0.046 4.046 4 C -0.086 4.086 5 C 0.021 3.979 6 C -0.205 4.205 7 C -0.055 4.055 8 C -0.211 4.211 9 C 0.074 3.926 10 C -0.475 4.475 11 H 0.088 0.912 12 C 0.036 3.964 13 N -0.763 5.763 14 Si 1.068 2.932 15 H -0.269 1.269 16 H -0.271 1.271 17 H -0.270 1.270 18 C -0.031 4.031 19 F -0.161 7.161 20 C -0.081 4.081 21 C -0.101 4.101 22 C -0.129 4.129 23 C 0.107 3.893 24 O -0.495 6.495 25 H 0.133 0.867 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.305 0.695 29 H 0.107 0.893 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -5.548 6.229 8.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.047 4.047 3 C -0.050 4.050 4 C -0.106 4.106 5 C 0.020 3.980 6 C -0.207 4.207 7 C -0.073 4.073 8 C -0.230 4.230 9 C 0.070 3.930 10 C -0.500 4.500 11 H 0.107 0.893 12 C -0.190 4.190 13 N -0.384 5.384 14 Si 0.890 3.110 15 H -0.194 1.194 16 H -0.196 1.196 17 H -0.195 1.195 18 C -0.051 4.051 19 F -0.140 7.140 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.147 4.147 23 C 0.059 3.941 24 O -0.305 6.305 25 H 0.151 0.849 26 H 0.121 0.879 27 H 0.133 0.867 28 H 0.119 0.881 29 H 0.125 0.875 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.974 -5.345 5.249 7.555 hybrid contribution -1.423 -0.186 0.707 1.599 sum -2.397 -5.531 5.956 8.474 Atomic orbital electron populations 1.81184 1.12086 1.08300 1.09027 1.25604 0.92583 0.93050 0.93470 1.16295 0.84291 0.96279 1.08113 1.21142 0.93774 0.96460 0.99270 1.18753 0.91541 0.93456 0.94215 1.17568 0.92340 0.94811 1.15935 1.20474 0.92607 0.97091 0.97131 1.20656 0.99123 0.95562 1.07708 1.17791 0.89897 0.93661 0.91658 1.20816 1.00173 0.96593 1.32421 0.89345 1.27326 0.98439 1.01755 0.91453 1.70477 1.40472 1.03950 1.23487 0.83576 0.75448 0.73535 0.78474 1.19350 1.19604 1.19464 1.17301 0.90157 0.86317 1.11353 1.91307 1.80290 1.54905 1.87480 1.20365 0.98238 0.92856 0.98556 1.21314 1.00531 0.92227 0.97866 1.21158 0.92384 0.99150 1.02034 1.18249 0.89743 0.85833 1.00242 1.84773 1.76660 1.39899 1.29163 0.84925 0.87869 0.86669 0.88126 0.87466 0.84866 0.84932 0.75735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.10 18.54 41.84 0.78 -6.32 16 2 C 0.27 4.02 14.86 -22.47 -0.33 3.69 16 3 C -0.05 -0.64 5.74 -106.76 -0.61 -1.25 16 4 C -0.09 -1.27 9.12 -38.77 -0.35 -1.63 16 5 C 0.02 0.32 5.88 -104.92 -0.62 -0.29 16 6 C -0.21 -3.87 5.90 -104.65 -0.62 -4.49 16 7 C -0.05 -1.05 9.35 -39.65 -0.37 -1.42 16 8 C -0.21 -4.64 7.92 -39.30 -0.31 -4.95 16 9 C 0.07 1.77 5.30 -106.73 -0.57 1.21 16 10 C -0.47 -11.43 8.68 -37.91 -0.33 -11.76 16 11 H 0.09 2.13 7.80 -52.48 -0.41 1.72 16 12 C 0.04 0.80 4.90 -17.33 -0.08 0.72 16 13 N -0.76 -17.84 12.31 55.55 0.68 -17.15 16 14 Si 1.07 19.00 30.01 -169.99 -5.10 13.90 16 15 H -0.27 -4.75 7.11 56.52 0.40 -4.34 16 16 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 17 H -0.27 -4.63 7.11 56.52 0.40 -4.22 16 18 C -0.03 -0.73 7.26 -39.08 -0.28 -1.01 16 19 F -0.16 -3.78 16.70 2.25 0.04 -3.75 16 20 C -0.08 -1.65 9.33 -39.60 -0.37 -2.02 16 21 C -0.10 -1.34 9.41 -39.15 -0.37 -1.71 16 22 C -0.13 -1.51 9.96 -39.54 -0.39 -1.90 16 23 C 0.11 1.34 6.71 -38.57 -0.26 1.08 16 24 O -0.50 -5.57 12.92 -18.59 -0.24 -5.81 16 25 H 0.13 1.91 6.16 -52.49 -0.32 1.59 16 26 H 0.10 1.66 6.15 -52.49 -0.32 1.34 16 27 H 0.12 2.56 6.52 -52.49 -0.34 2.22 16 28 H 0.30 7.28 6.79 -40.82 -0.28 7.00 16 29 H 0.11 1.94 6.16 -52.49 -0.32 1.61 16 30 H 0.13 1.60 6.15 -52.49 -0.32 1.28 16 31 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.39 2.54 9.06 45.56 0.41 2.96 16 LS Contribution 294.95 15.07 4.44 4.44 Total: -1.00 -26.31 294.95 -6.39 -32.70 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -1.13 Total: 7.71 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -5.87 Total: -25.73 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 1.46 Total: -23.48 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.24 Total: -5.81 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.04 Total: -3.75 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.10 Total: 13.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.31 -6.39 -32.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242564599.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.437 kcal (2) G-P(sol) polarization free energy of solvation -26.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds