Wall clock time and date at job start Tue Mar 31 2020 05:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39511 * 120.13390 * 212.19262 * 3 2 1 5 5 C 1.38958 * 119.78148 * 180.23438 * 4 3 2 6 6 C 1.48376 * 119.98116 * 179.75045 * 5 4 3 7 7 C 1.38668 * 120.01975 * 129.72276 * 6 5 4 8 8 C 1.40549 * 119.65668 * 179.75189 * 7 6 5 9 9 C 1.41336 * 120.15469 * 180.27663 * 8 7 6 10 10 H 1.08007 * 120.00022 * 204.68359 * 9 8 7 11 11 C 1.39891 * 120.00313 * 24.68233 * 9 8 7 12 12 N 1.30864 * 120.00097 * 17.78517 * 11 9 8 13 13 Si 1.86804 * 119.99887 * 197.78695 * 11 9 8 14 14 H 1.48503 * 109.47245 * 60.00033 * 13 11 9 15 15 H 1.48505 * 109.46971 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47353 * 299.99685 * 13 11 9 17 17 C 1.40857 * 119.68927 * 0.51803 * 8 7 6 18 18 C 1.37564 * 120.01727 * 359.73458 * 17 8 7 19 19 C 1.38747 * 120.35170 * 0.02562 * 18 17 8 20 20 F 1.35097 * 119.84331 * 179.97438 * 19 18 17 21 21 C 1.39601 * 120.04464 * 359.51520 * 5 4 3 22 22 C 1.37868 * 120.27004 * 0.46154 * 21 5 4 23 23 C 1.38729 * 120.22202 * 359.79371 * 22 21 5 24 24 O 1.35689 * 120.02409 * 179.97438 * 23 22 21 25 25 H 1.08000 * 120.10954 * 359.96108 * 4 3 2 26 26 H 1.07998 * 120.17147 * 359.97438 * 7 6 5 27 27 H 0.97002 * 120.00039 * 180.02562 * 12 11 9 28 28 H 1.07999 * 119.99131 * 179.75019 * 17 8 7 29 29 H 1.08004 * 119.81892 * 180.02562 * 18 17 8 30 30 H 1.08000 * 119.86263 * 180.23685 * 21 5 4 31 31 H 1.07999 * 119.88424 * 179.76670 * 22 21 5 32 32 H 0.96701 * 114.00305 * 269.97966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.0220 0.6428 5 6 4.6575 1.0180 0.6341 6 6 5.4063 2.1051 1.3116 7 6 6.4224 1.7963 2.2033 8 6 7.1303 2.8322 2.8369 9 6 8.1717 2.5295 3.7432 10 1 8.4438 3.2398 4.5100 11 6 8.8502 1.3099 3.6471 12 7 8.7809 0.6076 2.5451 13 14 9.8551 0.6838 5.0920 14 1 8.9704 0.5102 6.2721 15 1 10.4701 -0.6210 4.7389 16 1 10.9231 1.6640 5.4139 17 6 6.7935 4.1732 2.5682 18 6 5.7797 4.4646 1.6853 19 6 5.0834 3.4431 1.0554 20 9 4.0893 3.7409 0.1905 21 6 5.3495 -0.0107 -0.0075 22 6 4.6598 -1.0214 -0.6429 23 6 3.2726 -1.0256 -0.6457 24 8 2.5979 -2.0219 -1.2728 25 1 2.7316 1.8156 1.1418 26 1 6.6709 0.7653 2.4072 27 1 9.2510 -0.2383 2.4786 28 1 7.3316 4.9730 3.0554 29 1 5.5244 5.4940 1.4813 30 1 6.4295 -0.0129 -0.0092 31 1 5.2015 -1.8121 -1.1406 32 1 2.4021 -1.8401 -2.2021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242565944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:09 Heat of formation + Delta-G solvation = -24.570682 kcal Electronic energy + Delta-G solvation = -20482.174962 eV Core-core repulsion = 17093.739146 eV Total energy + Delta-G solvation = -3388.435816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.63984 -39.85579 -37.77707 -36.58177 -36.20136 -33.78021 -31.58900 -31.19534 -29.53120 -27.89445 -25.25525 -23.77907 -22.81036 -21.39166 -20.61166 -18.88029 -17.97271 -17.11931 -16.27953 -15.98850 -15.58178 -15.40367 -14.85581 -14.47604 -14.30073 -13.86015 -13.62741 -13.29920 -13.06292 -12.92802 -12.69895 -12.24277 -12.20758 -12.06081 -11.79919 -11.73754 -11.26075 -11.21138 -10.96843 -10.57086 -10.55879 -10.10436 -9.72238 -9.32229 -8.88602 -8.67910 -7.62827 -7.45810 -6.99292 -4.56996 0.83809 1.28601 2.41419 2.61040 2.76882 2.96518 2.96832 3.02155 3.15103 3.77335 3.82827 3.97700 4.14832 4.34465 4.97977 5.13776 5.31574 5.43517 5.53178 5.63331 5.73798 5.94008 5.99806 6.23132 6.35331 6.51362 6.63365 6.73918 6.83043 6.91883 6.99506 7.20489 7.48056 7.51531 7.57469 7.60262 7.76274 7.95806 8.31122 8.60922 8.64364 9.94528 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.005127 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.812016 B = 5459.443209 C = 6518.860690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C 0.270 3.730 3 C -0.065 4.065 4 C -0.043 4.043 5 C -0.022 4.022 6 C -0.075 4.075 7 C -0.121 4.121 8 C 0.101 3.899 9 C -0.454 4.454 10 H 0.082 0.918 11 C 0.077 3.923 12 N -0.789 5.789 13 Si 0.911 3.089 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.264 1.264 17 C -0.198 4.198 18 C -0.116 4.116 19 C -0.032 4.032 20 F -0.168 7.168 21 C -0.056 4.056 22 C -0.146 4.146 23 C 0.138 3.862 24 O -0.495 6.495 25 H 0.136 0.864 26 H 0.132 0.868 27 H 0.285 0.715 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.144 0.856 31 H 0.137 0.863 32 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.917 -3.027 -4.569 5.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.045 4.045 3 C -0.069 4.069 4 C -0.063 4.063 5 C -0.022 4.022 6 C -0.076 4.076 7 C -0.140 4.140 8 C 0.098 3.902 9 C -0.483 4.483 10 H 0.100 0.900 11 C -0.142 4.142 12 N -0.414 5.414 13 Si 0.735 3.265 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.189 1.189 17 C -0.218 4.218 18 C -0.135 4.135 19 C -0.051 4.051 20 F -0.147 7.147 21 C -0.074 4.074 22 C -0.164 4.164 23 C 0.091 3.909 24 O -0.305 6.305 25 H 0.153 0.847 26 H 0.150 0.850 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.162 0.838 31 H 0.155 0.845 32 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.587 -3.523 -4.173 6.534 hybrid contribution 0.797 -0.014 -0.028 0.798 sum -2.789 -3.537 -4.201 6.160 Atomic orbital electron populations 1.81177 1.12008 1.08537 1.08869 1.25500 0.92462 0.93044 0.93476 1.16287 0.84532 0.98427 1.07630 1.21223 0.93617 0.95694 0.95784 1.18840 0.91807 0.94921 0.96677 1.18379 0.98973 0.89332 1.00908 1.21352 0.93761 1.00488 0.98380 1.17575 0.91299 0.90394 0.90911 1.19567 1.14108 1.01342 1.13239 0.89966 1.25922 0.96073 0.95964 0.96262 1.69764 1.34378 1.12644 1.24606 0.86310 0.79957 0.78542 0.81723 1.18652 1.20158 1.18869 1.20929 1.01290 0.96396 1.03178 1.20472 0.97609 0.96578 0.98890 1.17207 0.94994 0.92541 1.00406 1.91297 1.60209 1.94143 1.69067 1.21562 1.01350 0.91551 0.92979 1.21249 0.92313 1.00031 1.02834 1.18350 0.89829 0.86761 0.95949 1.84765 1.76670 1.40435 1.28668 0.84659 0.84997 0.90393 0.87805 0.87811 0.83803 0.84478 0.75240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.31 18.54 41.84 0.78 -6.54 16 2 C 0.27 4.23 14.86 -22.47 -0.33 3.90 16 3 C -0.06 -0.96 5.74 -106.75 -0.61 -1.58 16 4 C -0.04 -0.70 8.55 -38.84 -0.33 -1.03 16 5 C -0.02 -0.39 5.31 -104.95 -0.56 -0.95 16 6 C -0.07 -1.56 5.47 -104.90 -0.57 -2.13 16 7 C -0.12 -2.72 8.12 -38.55 -0.31 -3.04 16 8 C 0.10 2.38 5.57 -106.86 -0.60 1.78 16 9 C -0.45 -10.68 9.04 -37.79 -0.34 -11.03 16 10 H 0.08 1.86 7.91 -52.48 -0.41 1.44 16 11 C 0.08 1.71 5.14 -17.35 -0.09 1.62 16 12 N -0.79 -17.81 10.96 55.54 0.61 -17.20 16 13 Si 0.91 16.84 29.59 -169.99 -5.03 11.81 16 14 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16 15 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 C -0.20 -4.33 9.78 -38.84 -0.38 -4.71 16 18 C -0.12 -2.42 9.99 -39.64 -0.40 -2.81 16 19 C -0.03 -0.67 7.17 -38.73 -0.28 -0.95 16 20 F -0.17 -3.42 15.85 2.25 0.04 -3.38 16 21 C -0.06 -0.86 9.48 -39.21 -0.37 -1.24 16 22 C -0.15 -1.90 9.96 -39.54 -0.39 -2.29 16 23 C 0.14 1.85 6.71 -38.65 -0.26 1.59 16 24 O -0.50 -5.77 12.92 -18.77 -0.24 -6.01 16 25 H 0.14 2.21 7.76 -52.49 -0.41 1.80 16 26 H 0.13 3.04 6.14 -52.49 -0.32 2.71 16 27 H 0.29 5.86 8.30 -40.82 -0.34 5.52 16 28 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 29 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 30 H 0.14 2.26 8.03 -52.49 -0.42 1.84 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 32 H 0.39 2.69 9.06 45.56 0.41 3.10 16 LS Contribution 301.43 15.07 4.54 4.54 Total: -1.00 -25.91 301.43 -6.69 -32.60 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -1.56 Total: 7.03 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -5.83 Total: -22.86 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 1.38 Total: -23.74 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.24 Total: -6.01 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.04 Total: -3.38 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.81 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -25.91 -6.69 -32.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242565944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.032 kcal (2) G-P(sol) polarization free energy of solvation -25.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds