Wall clock time and date at job start Tue Mar 31 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39511 * 120.13390 * 212.19262 * 3 2 1 5 5 C 1.38958 * 119.78148 * 180.23438 * 4 3 2 6 6 C 1.48376 * 119.98116 * 179.75045 * 5 4 3 7 7 C 1.38668 * 120.01975 * 129.72276 * 6 5 4 8 8 C 1.40549 * 119.65668 * 179.75189 * 7 6 5 9 9 C 1.41336 * 120.15469 * 180.27663 * 8 7 6 10 10 H 1.08007 * 120.00022 * 204.68359 * 9 8 7 11 11 C 1.39891 * 120.00313 * 24.68233 * 9 8 7 12 12 N 1.30864 * 120.00097 * 17.78517 * 11 9 8 13 13 Si 1.86804 * 119.99887 * 197.78695 * 11 9 8 14 14 H 1.48503 * 109.47245 * 60.00033 * 13 11 9 15 15 H 1.48505 * 109.46971 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47353 * 299.99685 * 13 11 9 17 17 C 1.40857 * 119.68927 * 0.51803 * 8 7 6 18 18 C 1.37564 * 120.01727 * 359.73458 * 17 8 7 19 19 C 1.38747 * 120.35170 * 0.02562 * 18 17 8 20 20 F 1.35097 * 119.84331 * 179.97438 * 19 18 17 21 21 C 1.39601 * 120.04464 * 359.51520 * 5 4 3 22 22 C 1.37868 * 120.27004 * 0.46154 * 21 5 4 23 23 C 1.38729 * 120.22202 * 359.79371 * 22 21 5 24 24 O 1.35689 * 120.02409 * 179.97438 * 23 22 21 25 25 H 1.08000 * 120.10954 * 359.96108 * 4 3 2 26 26 H 1.07998 * 120.17147 * 359.97438 * 7 6 5 27 27 H 0.97002 * 120.00039 * 180.02562 * 12 11 9 28 28 H 1.07999 * 119.99131 * 179.75019 * 17 8 7 29 29 H 1.08004 * 119.81892 * 180.02562 * 18 17 8 30 30 H 1.08000 * 119.86263 * 180.23685 * 21 5 4 31 31 H 1.07999 * 119.88424 * 179.76670 * 22 21 5 32 32 H 0.96701 * 114.00305 * 269.97966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.0220 0.6428 5 6 4.6575 1.0180 0.6341 6 6 5.4063 2.1051 1.3116 7 6 6.4224 1.7963 2.2033 8 6 7.1303 2.8322 2.8369 9 6 8.1717 2.5295 3.7432 10 1 8.4438 3.2398 4.5100 11 6 8.8502 1.3099 3.6471 12 7 8.7809 0.6076 2.5451 13 14 9.8551 0.6838 5.0920 14 1 8.9704 0.5102 6.2721 15 1 10.4701 -0.6210 4.7389 16 1 10.9231 1.6640 5.4139 17 6 6.7935 4.1732 2.5682 18 6 5.7797 4.4646 1.6853 19 6 5.0834 3.4431 1.0554 20 9 4.0893 3.7409 0.1905 21 6 5.3495 -0.0107 -0.0075 22 6 4.6598 -1.0214 -0.6429 23 6 3.2726 -1.0256 -0.6457 24 8 2.5979 -2.0219 -1.2728 25 1 2.7316 1.8156 1.1418 26 1 6.6709 0.7653 2.4072 27 1 9.2510 -0.2383 2.4786 28 1 7.3316 4.9730 3.0554 29 1 5.5244 5.4940 1.4813 30 1 6.4295 -0.0129 -0.0092 31 1 5.2015 -1.8121 -1.1406 32 1 2.4021 -1.8401 -2.2021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242565944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:08 Heat of formation + Delta-G solvation = -37.163784 kcal Electronic energy + Delta-G solvation = -20482.721040 eV Core-core repulsion = 17093.739146 eV Total energy + Delta-G solvation = -3388.981894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.28719 -41.03176 -39.29960 -37.75669 -37.50563 -35.44101 -33.00027 -32.40985 -31.22384 -29.30486 -26.94497 -25.02490 -24.12449 -22.99875 -22.11480 -20.07144 -19.31993 -18.61563 -17.92641 -17.33256 -16.91740 -16.66407 -16.38393 -16.02065 -15.80944 -15.09467 -14.98114 -14.66539 -14.50358 -14.24062 -14.05995 -13.82441 -13.74150 -13.36401 -13.19917 -13.09436 -12.81490 -12.72492 -12.47639 -12.16108 -11.71769 -11.65639 -11.33340 -10.97030 -10.06945 -10.03613 -9.29066 -9.03372 -8.64028 -6.32607 -0.36259 0.05282 0.82139 0.97121 1.45303 1.51134 1.52795 1.56226 1.87053 2.23677 2.59507 2.69129 2.79957 3.08595 3.59642 3.75998 3.85406 3.97600 4.22258 4.30947 4.39336 4.58892 4.77136 4.87837 5.03813 5.06153 5.15444 5.18559 5.29600 5.50814 5.53619 5.65489 5.81191 5.89268 6.04907 6.27544 6.33619 6.59413 6.72504 6.89238 6.92454 8.30879 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.005127 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.812016 B = 5459.443209 C = 6518.860690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.285 3.715 3 C -0.070 4.070 4 C -0.043 4.043 5 C -0.053 4.053 6 C -0.068 4.068 7 C -0.139 4.139 8 C 0.076 3.924 9 C -0.487 4.487 10 H 0.081 0.919 11 C 0.043 3.957 12 N -0.810 5.810 13 Si 0.976 3.024 14 H -0.264 1.264 15 H -0.267 1.267 16 H -0.262 1.262 17 C -0.212 4.212 18 C -0.117 4.117 19 C -0.044 4.044 20 F -0.164 7.164 21 C -0.054 4.054 22 C -0.132 4.132 23 C 0.164 3.836 24 O -0.497 6.497 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.293 0.707 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.171 0.829 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 -4.462 -5.346 7.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.030 4.030 3 C -0.074 4.074 4 C -0.063 4.063 5 C -0.053 4.053 6 C -0.069 4.069 7 C -0.159 4.159 8 C 0.073 3.927 9 C -0.516 4.516 10 H 0.099 0.901 11 C -0.174 4.174 12 N -0.435 5.435 13 Si 0.797 3.203 14 H -0.188 1.188 15 H -0.191 1.191 16 H -0.186 1.186 17 C -0.232 4.232 18 C -0.136 4.136 19 C -0.064 4.064 20 F -0.143 7.143 21 C -0.072 4.072 22 C -0.150 4.150 23 C 0.116 3.884 24 O -0.311 6.311 25 H 0.146 0.854 26 H 0.141 0.859 27 H 0.104 0.896 28 H 0.132 0.868 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.189 0.811 32 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -3.613 -4.948 -4.987 7.899 hybrid contribution 0.712 0.386 0.086 0.815 sum -2.901 -4.562 -4.901 7.297 Atomic orbital electron populations 1.81195 1.12689 1.09389 1.09812 1.25529 0.92419 0.92295 0.92723 1.16255 0.84029 0.98836 1.08241 1.21076 0.93069 0.96120 0.96064 1.18745 0.92266 0.95450 0.98816 1.18591 0.98131 0.90351 0.99797 1.21278 0.95055 0.99854 0.99696 1.17934 0.91829 0.91438 0.91488 1.19811 1.15147 1.02636 1.13964 0.90092 1.26618 0.96784 0.95610 0.98398 1.69795 1.34851 1.13047 1.25815 0.85325 0.78378 0.78200 0.78366 1.18840 1.19149 1.18592 1.21096 1.02013 0.96217 1.03858 1.20734 0.96910 0.97829 0.98092 1.17416 0.95292 0.93020 1.00695 1.91298 1.60004 1.94116 1.68899 1.21553 1.01192 0.91615 0.92877 1.21464 0.92130 0.99725 1.01659 1.18335 0.89897 0.85717 0.94434 1.84710 1.76295 1.39490 1.30648 0.85389 0.85946 0.89611 0.86794 0.85430 0.84375 0.81122 0.72224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.88 18.54 19.00 0.35 -14.53 16 2 C 0.28 8.47 14.86 88.33 1.31 9.79 16 3 C -0.07 -1.94 5.74 -21.24 -0.12 -2.06 16 4 C -0.04 -1.37 8.55 22.75 0.19 -1.17 16 5 C -0.05 -1.85 5.31 -20.08 -0.11 -1.95 16 6 C -0.07 -2.86 5.47 -20.05 -0.11 -2.97 16 7 C -0.14 -6.49 8.12 22.94 0.19 -6.30 16 8 C 0.08 3.67 5.57 -21.31 -0.12 3.55 16 9 C -0.49 -23.52 9.04 23.43 0.21 -23.31 16 10 H 0.08 3.77 7.91 -2.91 -0.02 3.74 16 11 C 0.04 1.92 5.14 85.24 0.44 2.36 16 12 N -0.81 -36.89 10.96 21.82 0.24 -36.65 16 13 Si 0.98 34.36 29.59 68.60 2.03 36.39 16 14 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 15 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 16 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 17 C -0.21 -9.45 9.78 22.75 0.22 -9.23 16 18 C -0.12 -4.86 9.99 22.23 0.22 -4.64 16 19 C -0.04 -1.89 7.17 22.82 0.16 -1.73 16 20 F -0.16 -6.62 15.85 44.97 0.71 -5.91 16 21 C -0.05 -1.60 9.48 22.51 0.21 -1.38 16 22 C -0.13 -3.01 9.96 22.30 0.22 -2.79 16 23 C 0.16 3.86 6.71 22.87 0.15 4.01 16 24 O -0.50 -9.60 12.92 -90.08 -1.16 -10.76 16 25 H 0.13 4.21 7.76 -2.91 -0.02 4.18 16 26 H 0.12 5.83 6.14 -2.91 -0.02 5.81 16 27 H 0.29 11.99 8.30 -92.71 -0.77 11.22 16 28 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 29 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.14 4.27 8.03 -2.91 -0.02 4.25 16 31 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.42 3.89 9.06 -74.06 -0.67 3.22 16 Total: -1.00 -55.75 301.43 5.78 -49.97 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.52 Total: 19.31 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 3.08 Total: -37.82 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.59 Total: -51.18 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.16 Total: -10.76 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.71 Total: -5.91 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Total: -55.75 5.78 -49.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242565944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.805 kcal (2) G-P(sol) polarization free energy of solvation -55.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds