Wall clock time and date at job start Tue Mar 31 2020 05:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39381 * 120.12417 * 259.38274 * 3 2 1 5 5 C 1.39317 * 119.75424 * 179.97438 * 4 3 2 6 6 C 1.47827 * 120.00086 * 179.97438 * 5 4 3 7 7 C 1.39101 * 120.27203 * 310.30280 * 6 5 4 8 8 C 1.38099 * 120.17756 * 180.27806 * 7 6 5 9 9 C 1.38842 * 120.71919 * 359.71595 * 8 7 6 10 10 C 1.37715 * 120.52917 * 359.97438 * 9 8 7 11 11 F 1.35095 * 120.09754 * 180.02562 * 10 9 8 12 12 C 1.41037 * 119.79721 * 0.02562 * 10 9 8 13 13 C 1.40778 * 120.34379 * 180.02562 * 12 10 9 14 14 H 1.08002 * 120.00084 * 144.76862 * 13 12 10 15 15 C 1.40045 * 120.00107 * 324.76249 * 13 12 10 16 16 N 1.30814 * 119.99932 * 149.16540 * 15 13 12 17 17 Si 1.86798 * 120.00138 * 329.44715 * 15 13 12 18 18 H 1.48493 * 109.47492 * 269.72303 * 17 15 13 19 19 H 1.48502 * 109.47074 * 29.72161 * 17 15 13 20 20 H 1.48506 * 109.47259 * 149.71856 * 17 15 13 21 21 C 1.39914 * 119.99064 * 0.27495 * 5 4 3 22 22 C 1.37730 * 120.24578 * 359.46319 * 21 5 4 23 23 C 1.38852 * 120.25219 * 0.51177 * 22 21 5 24 24 O 1.35633 * 119.99735 * 179.74124 * 23 22 21 25 25 H 1.08006 * 120.12157 * 359.95224 * 4 3 2 26 26 H 1.08002 * 119.90893 * 0.02562 * 7 6 5 27 27 H 1.08001 * 119.64113 * 179.69965 * 8 7 6 28 28 H 1.07999 * 119.73706 * 179.97438 * 9 8 7 29 29 H 0.97003 * 119.99806 * 355.19339 * 16 15 13 30 30 H 1.08004 * 119.87378 * 179.70064 * 21 5 4 31 31 H 1.08006 * 119.87627 * 180.26062 * 22 21 5 32 32 H 0.96704 * 114.00128 * 270.01992 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2674 0.2231 1.1849 5 6 4.6605 0.2215 1.1762 6 6 5.4078 0.4574 2.4296 7 6 5.0918 1.5423 3.2409 8 6 5.7950 1.7641 4.4086 9 6 6.8194 0.9092 4.7928 10 6 7.1526 -0.1773 4.0151 11 9 8.1505 -1.0037 4.3976 12 6 6.4489 -0.4247 2.8182 13 6 6.7795 -1.5323 2.0146 14 1 6.0047 -2.0633 1.4816 15 6 8.1132 -1.9457 1.9064 16 7 8.3929 -3.2090 1.7141 17 14 9.4931 -0.6942 2.0446 18 1 9.8149 -0.1613 0.6964 19 1 9.0642 0.4200 2.9277 20 1 10.6971 -1.3462 2.6195 21 6 5.3522 0.0029 -0.0202 22 6 4.6609 -0.2222 -1.1900 23 6 3.2724 -0.2234 -1.1929 24 8 2.5968 -0.4404 -2.3489 25 1 2.7313 0.3964 2.1064 26 1 4.2971 2.2153 2.9547 27 1 5.5456 2.6118 5.0294 28 1 7.3592 1.0979 5.7090 29 1 7.6819 -3.8689 1.7161 30 1 6.4322 0.0069 -0.0257 31 1 5.2009 -0.3944 -2.1094 32 1 2.4008 0.3649 -2.8470 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242566035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:34 Heat of formation + Delta-G solvation = -19.026618 kcal Electronic energy + Delta-G solvation = -20919.192362 eV Core-core repulsion = 17530.996954 eV Total energy + Delta-G solvation = -3388.195408 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.78313 -39.78608 -37.94032 -36.45352 -36.01430 -34.00148 -31.51634 -31.10122 -30.08080 -27.88708 -25.15327 -23.55833 -22.82500 -20.98172 -20.64940 -18.81359 -18.55433 -17.72445 -16.04713 -15.85630 -15.47037 -15.34301 -14.94659 -14.84139 -14.06101 -13.78541 -13.64327 -13.44265 -13.16076 -12.95550 -12.77916 -12.47820 -12.28868 -12.03714 -11.69302 -11.55291 -11.30519 -10.88915 -10.75784 -10.50922 -10.39725 -10.07548 -9.62120 -9.17465 -8.77671 -8.53743 -7.86411 -7.53662 -7.45891 -4.72805 0.95851 1.38749 2.29684 2.38843 2.80843 3.18995 3.21643 3.23228 3.40262 3.91768 3.94961 4.06682 4.23732 4.31681 4.94079 5.11279 5.28251 5.57907 5.62188 5.64029 5.75870 5.86126 6.02623 6.12316 6.22757 6.39837 6.51840 6.67490 6.86601 6.91855 7.10124 7.16982 7.33927 7.41851 7.49509 7.59335 7.67589 7.69313 8.08271 8.26443 8.48023 9.74030 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.006130 C = 0.005092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.156413 B = 4566.597679 C = 5497.352776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C 0.272 3.728 3 C -0.066 4.066 4 C -0.067 4.067 5 C 0.010 3.990 6 C -0.168 4.168 7 C -0.064 4.064 8 C -0.227 4.227 9 C -0.105 4.105 10 C -0.014 4.014 11 F -0.149 7.149 12 C 0.087 3.913 13 C -0.516 4.516 14 H 0.091 0.909 15 C 0.055 3.945 16 N -0.781 5.781 17 Si 1.065 2.935 18 H -0.291 1.291 19 H -0.260 1.260 20 H -0.276 1.276 21 C -0.046 4.046 22 C -0.148 4.148 23 C 0.130 3.870 24 O -0.496 6.496 25 H 0.131 0.869 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.292 0.708 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 7.457 -3.304 8.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.112 5.112 2 C -0.043 4.043 3 C -0.070 4.070 4 C -0.088 4.088 5 C 0.010 3.990 6 C -0.169 4.169 7 C -0.083 4.083 8 C -0.246 4.246 9 C -0.124 4.124 10 C -0.033 4.033 11 F -0.128 7.128 12 C 0.083 3.917 13 C -0.542 4.542 14 H 0.109 0.891 15 C -0.170 4.170 16 N -0.400 5.400 17 Si 0.890 3.110 18 H -0.219 1.219 19 H -0.185 1.185 20 H -0.202 1.202 21 C -0.064 4.064 22 C -0.166 4.166 23 C 0.082 3.918 24 O -0.306 6.306 25 H 0.149 0.851 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.124 0.876 29 H 0.104 0.896 30 H 0.160 0.840 31 H 0.152 0.848 32 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -2.239 6.852 -3.247 7.906 hybrid contribution -1.160 -0.166 0.071 1.174 sum -3.399 6.686 -3.176 8.145 Atomic orbital electron populations 1.81169 1.12106 1.09956 1.07996 1.25592 0.92548 0.93039 0.93129 1.16260 0.84273 1.11057 0.95444 1.21234 0.93672 0.98046 0.95804 1.18607 0.91050 0.95994 0.93322 1.18272 1.04549 0.98542 0.95581 1.20720 0.97674 0.96062 0.93819 1.20097 1.01747 1.02701 1.00013 1.20681 0.98426 0.94406 0.98880 1.17644 0.94855 0.94011 0.96812 1.91090 1.58957 1.71969 1.90768 1.17554 0.91154 0.92185 0.90793 1.20450 0.95973 1.11053 1.26716 0.89112 1.27393 1.00873 0.98607 0.90104 1.70520 1.38979 1.02236 1.28243 0.83697 0.74369 0.75993 0.76916 1.21851 1.18504 1.20168 1.21581 1.01434 0.93028 0.90400 1.21251 0.92262 1.03377 0.99753 1.18363 0.89795 0.99234 0.84380 1.84764 1.76654 1.35687 1.33474 0.85080 0.87985 0.87806 0.87590 0.89644 0.84028 0.84840 0.75572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -7.42 18.54 41.84 0.78 -6.65 16 2 C 0.27 4.26 14.86 -22.47 -0.33 3.92 16 3 C -0.07 -0.99 5.74 -106.76 -0.61 -1.60 16 4 C -0.07 -1.05 9.20 -38.76 -0.36 -1.40 16 5 C 0.01 0.18 4.95 -104.95 -0.52 -0.34 16 6 C -0.17 -3.32 5.52 -104.27 -0.58 -3.90 16 7 C -0.06 -1.16 9.47 -39.31 -0.37 -1.53 16 8 C -0.23 -4.09 10.02 -39.41 -0.40 -4.49 16 9 C -0.10 -2.08 9.99 -39.55 -0.40 -2.47 16 10 C -0.01 -0.31 5.07 -38.71 -0.20 -0.50 16 11 F -0.15 -3.50 12.92 2.25 0.03 -3.47 16 12 C 0.09 1.96 4.86 -106.49 -0.52 1.44 16 13 C -0.52 -12.18 7.01 -37.94 -0.27 -12.45 16 14 H 0.09 2.23 7.31 -52.49 -0.38 1.85 16 15 C 0.06 1.32 4.68 -17.31 -0.08 1.24 16 16 N -0.78 -19.42 13.65 55.55 0.76 -18.66 16 17 Si 1.07 22.83 25.88 -169.99 -4.40 18.43 16 18 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.26 -5.57 5.39 56.52 0.30 -5.26 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 C -0.05 -0.75 8.18 -39.14 -0.32 -1.07 16 22 C -0.15 -2.09 9.96 -39.54 -0.39 -2.49 16 23 C 0.13 1.82 6.72 -38.57 -0.26 1.57 16 24 O -0.50 -6.21 12.92 -18.60 -0.24 -6.45 16 25 H 0.13 1.91 8.03 -52.48 -0.42 1.49 16 26 H 0.10 1.55 8.03 -52.49 -0.42 1.13 16 27 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.29 7.10 8.73 -40.82 -0.36 6.74 16 30 H 0.14 2.44 7.32 -52.48 -0.38 2.05 16 31 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.39 2.92 9.06 45.56 0.41 3.33 16 LS Contribution 292.38 15.07 4.41 4.41 Total: -1.00 -26.33 292.38 -5.98 -32.31 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -1.71 Total: 4.17 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -5.59 Total: -24.07 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 1.53 Total: -25.31 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.24 Total: -6.45 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.03 Total: -3.47 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.40 Total: 18.43 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.33 -5.98 -32.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242566035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.282 kcal (2) G-P(sol) polarization free energy of solvation -26.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds